Wall clock time and date at job start Tue Mar 31 2020 16:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.53003 * 110.07613 * 119.30250 * 14 13 12 17 17 N 1.46504 * 109.46689 * 67.81048 * 16 14 13 18 18 C 1.34776 * 119.99527 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00174 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99746 * 180.02562 * 18 17 16 21 21 C 1.54345 * 110.82136 * 295.89314 * 20 18 17 22 22 C 1.51674 * 105.01731 * 215.57043 * 21 20 18 23 23 C 1.38498 * 130.30767 * 197.08275 * 22 21 20 24 24 C 1.38104 * 120.21952 * 179.81274 * 23 22 21 25 25 C 1.38251 * 119.92903 * 0.02562 * 24 23 22 26 26 C 1.38108 * 119.94120 * 359.97438 * 25 24 23 27 27 C 1.38215 * 109.83997 * 16.92364 * 22 21 20 28 28 C 1.51362 * 109.75861 * 0.14968 * 27 22 21 29 29 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 33 33 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 34 34 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 35 35 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 36 36 H 1.08994 * 109.47097 * 187.81197 * 16 14 13 37 37 H 1.08997 * 109.46816 * 307.81260 * 16 14 13 38 38 H 0.96995 * 119.99832 * 359.97438 * 17 16 14 39 39 H 1.08994 * 110.72976 * 59.29818 * 20 18 17 40 40 H 1.09005 * 110.30235 * 334.35000 * 21 20 18 41 41 H 1.08999 * 110.30487 * 96.50181 * 21 20 18 42 42 H 1.08001 * 119.89088 * 359.83312 * 23 22 21 43 43 H 1.07991 * 120.03602 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.03319 * 180.02562 * 25 24 23 45 45 H 1.07991 * 119.89449 * 180.02562 * 26 25 24 46 46 H 1.09002 * 110.30395 * 223.89837 * 28 27 22 47 47 H 1.09001 * 110.30449 * 101.75210 * 28 27 22 48 48 H 1.09002 * 110.48043 * 217.71140 * 29 14 13 49 49 H 1.09000 * 110.48785 * 95.07352 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3646 -4.2912 -0.7021 16 6 7.7750 -2.9783 0.2766 17 7 8.5788 -4.1145 0.7342 18 6 9.8770 -3.9376 1.0503 19 8 10.3798 -2.8380 0.9555 20 6 10.7040 -5.1064 1.5205 21 6 10.1700 -5.6520 2.8619 22 6 11.4044 -6.0862 3.6289 23 6 11.5291 -6.9180 4.7292 24 6 12.7745 -7.1786 5.2661 25 6 13.9011 -6.6071 4.7043 26 6 13.7790 -5.7774 3.6071 27 6 12.5308 -5.5151 3.0671 28 6 12.1337 -4.6548 1.8867 29 6 5.5226 -2.2906 -0.6141 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 4.6684 -2.0660 2.0714 33 1 3.5794 -3.4735 1.8645 34 1 5.3263 -4.8906 1.2438 35 1 6.3263 -3.7132 2.1400 36 1 8.2131 -2.5659 -0.6322 37 1 7.7556 -2.2116 1.0510 38 1 8.1765 -4.9938 0.8104 39 1 10.7273 -5.8914 0.7647 40 1 9.6438 -4.8680 3.4065 41 1 9.5098 -6.5017 2.6887 42 1 10.6494 -7.3647 5.1686 43 1 12.8682 -7.8273 6.1243 44 1 14.8759 -6.8101 5.1226 45 1 14.6595 -5.3317 3.1686 46 1 12.8104 -4.8257 1.0495 47 1 12.1374 -3.6017 2.1680 48 1 5.4810 -2.3763 -1.6999 49 1 5.9446 -1.3290 -0.3223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086811921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:22 Heat of formation + Delta-G solvation = -18.300035 kcal Electronic energy + Delta-G solvation = -26789.140626 eV Core-core repulsion = 23100.919878 eV Total energy + Delta-G solvation = -3688.220748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93219 -39.55274 -38.26941 -35.80518 -35.08165 -33.46184 -31.79005 -31.13712 -30.02723 -28.93966 -27.73525 -27.49192 -24.93539 -23.32334 -22.70641 -21.77041 -21.28558 -20.48369 -19.78996 -19.38824 -17.65845 -17.51045 -16.59688 -16.34031 -16.24202 -15.61009 -15.25177 -15.06604 -14.72083 -14.56975 -14.03672 -13.63703 -13.58538 -13.35524 -13.21145 -13.10900 -12.92460 -12.78512 -12.50853 -12.44073 -12.19958 -11.66441 -11.61471 -11.54534 -11.36520 -11.16001 -10.99959 -10.85701 -10.66357 -10.61161 -10.41101 -10.26584 -10.05009 -9.87050 -9.58839 -9.23290 -9.17025 -8.91197 -8.87285 -7.26444 -5.77855 -3.13149 0.98013 1.02474 2.39519 2.93770 3.37837 3.38579 3.41095 3.45699 3.88506 4.09369 4.46903 4.56114 4.58747 4.63383 4.67450 4.69698 4.81271 4.82622 4.88507 4.95461 5.13571 5.19793 5.31773 5.35153 5.40285 5.44279 5.46518 5.57822 5.61809 5.65343 5.69342 5.73883 5.79209 5.80934 5.92000 5.96152 6.07038 6.08474 6.14791 6.20514 6.25497 6.26821 6.30324 6.40850 6.59063 6.63085 6.77906 6.96765 7.28601 7.98944 8.00208 8.41759 9.20307 9.93129 10.12850 11.40438 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.001909 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.438143 B =14665.038085 C =14979.077325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.076 0.924 16 C 0.125 3.875 17 N -0.724 5.724 18 C 0.520 3.480 19 O -0.538 6.538 20 C -0.111 4.111 21 C -0.071 4.071 22 C -0.098 4.098 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.108 4.108 27 C -0.092 4.092 28 C -0.068 4.068 29 C -0.127 4.127 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.401 0.599 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.067 0.933 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.764 -17.335 6.469 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.072 3.928 11 H 0.083 0.917 12 C -0.184 4.184 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.094 0.906 16 C 0.002 3.998 17 N -0.376 5.376 18 C 0.306 3.694 19 O -0.415 6.415 20 C -0.132 4.132 21 C -0.108 4.108 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.092 4.092 28 C -0.105 4.105 29 C -0.166 4.166 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.085 0.915 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 27.838 -16.565 6.370 33.014 hybrid contribution 0.336 0.752 0.164 0.839 sum 28.174 -15.813 6.534 32.962 Atomic orbital electron populations 1.69702 1.05111 1.25821 1.57525 1.24680 0.95244 0.97230 1.02027 0.86558 0.79241 0.84982 0.77800 1.21068 1.21761 1.20296 1.19096 0.80632 0.94695 1.43002 0.89210 1.42744 1.04017 1.02006 1.89811 1.21135 0.89858 0.89200 0.92635 0.91720 1.23038 0.96013 0.98524 1.00863 1.22211 0.97846 0.99636 0.96149 1.21956 0.92808 0.99214 0.98005 0.90602 1.21580 0.90029 0.88313 0.99880 1.46054 1.10446 1.13131 1.67921 1.20308 0.82165 0.89862 0.77094 1.90716 1.71538 1.26275 1.52929 1.21998 0.95687 0.96978 0.98563 1.21045 0.95558 1.01149 0.93085 1.20547 0.95305 0.97659 0.96300 1.20639 0.97774 0.98209 0.95636 1.21047 0.92412 1.00430 1.00152 1.21059 0.98738 0.97672 0.96275 1.20635 0.96378 0.98881 0.96670 1.20598 0.93427 0.97696 0.97483 1.20935 0.93797 1.00280 0.95497 1.22645 0.96576 0.97300 1.00047 0.93073 0.80581 0.92004 0.92084 0.92189 0.92319 0.91491 0.91203 0.76476 0.87367 0.89536 0.89670 0.86099 0.85858 0.85880 0.86137 0.90159 0.88227 0.91456 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.16 27.73 -169.99 -4.71 17.44 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.82 10.44 -15.06 -0.16 -6.98 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.74 -17.30 5.03 -51.51 -0.26 -17.56 16 10 C 0.18 3.32 3.56 -65.95 -0.23 3.08 16 11 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 12 C -0.14 -2.33 6.51 -25.07 -0.16 -2.49 16 13 C -0.12 -1.41 6.19 -25.61 -0.16 -1.57 16 14 C -0.10 -1.12 2.96 -89.50 -0.26 -1.38 16 15 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 16 C 0.13 1.38 4.69 -4.04 -0.02 1.36 16 17 N -0.72 -6.52 5.33 -60.29 -0.32 -6.84 16 18 C 0.52 5.45 7.05 -10.98 -0.08 5.37 16 19 O -0.54 -7.90 15.53 5.56 0.09 -7.82 16 20 C -0.11 -0.85 3.46 -90.36 -0.31 -1.16 16 21 C -0.07 -0.50 6.32 -26.70 -0.17 -0.67 16 22 C -0.10 -0.81 6.15 -104.05 -0.64 -1.45 16 23 C -0.10 -0.79 10.04 -39.53 -0.40 -1.18 16 24 C -0.12 -0.85 10.05 -39.63 -0.40 -1.25 16 25 C -0.12 -0.84 10.05 -39.62 -0.40 -1.23 16 26 C -0.11 -0.84 10.04 -39.53 -0.40 -1.24 16 27 C -0.09 -0.80 6.14 -104.21 -0.64 -1.44 16 28 C -0.07 -0.58 6.08 -26.86 -0.16 -0.75 16 29 C -0.13 -1.83 5.98 -25.09 -0.15 -1.98 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.36 8.32 5.63 -40.82 -0.23 8.09 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.65 7.62 -51.93 -0.40 0.26 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 2.57 8.35 -40.82 -0.34 2.23 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 1.04 7.03 -51.93 -0.36 0.68 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -33.67 391.87 -11.43 -45.10 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.07 Total: 7.16 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -4.83 Total: -14.92 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.19 Total: -52.87 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.67 -11.43 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086811921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds