Wall clock time and date at job start Tue Mar 31 2020 16:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.53003 * 110.07613 * 119.30250 * 14 13 12 17 17 N 1.46504 * 109.46689 * 67.81048 * 16 14 13 18 18 C 1.34776 * 119.99527 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00174 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99746 * 180.02562 * 18 17 16 21 21 C 1.54345 * 110.82136 * 295.89314 * 20 18 17 22 22 C 1.51674 * 105.01731 * 215.57043 * 21 20 18 23 23 C 1.38498 * 130.30767 * 197.08275 * 22 21 20 24 24 C 1.38104 * 120.21952 * 179.81274 * 23 22 21 25 25 C 1.38251 * 119.92903 * 0.02562 * 24 23 22 26 26 C 1.38108 * 119.94120 * 359.97438 * 25 24 23 27 27 C 1.38215 * 109.83997 * 16.92364 * 22 21 20 28 28 C 1.51362 * 109.75861 * 0.14968 * 27 22 21 29 29 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 33 33 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 34 34 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 35 35 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 36 36 H 1.08994 * 109.47097 * 187.81197 * 16 14 13 37 37 H 1.08997 * 109.46816 * 307.81260 * 16 14 13 38 38 H 0.96995 * 119.99832 * 359.97438 * 17 16 14 39 39 H 1.08994 * 110.72976 * 59.29818 * 20 18 17 40 40 H 1.09005 * 110.30235 * 334.35000 * 21 20 18 41 41 H 1.08999 * 110.30487 * 96.50181 * 21 20 18 42 42 H 1.08001 * 119.89088 * 359.83312 * 23 22 21 43 43 H 1.07991 * 120.03602 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.03319 * 180.02562 * 25 24 23 45 45 H 1.07991 * 119.89449 * 180.02562 * 26 25 24 46 46 H 1.09002 * 110.30395 * 223.89837 * 28 27 22 47 47 H 1.09001 * 110.30449 * 101.75210 * 28 27 22 48 48 H 1.09002 * 110.48043 * 217.71140 * 29 14 13 49 49 H 1.09000 * 110.48785 * 95.07352 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3646 -4.2912 -0.7021 16 6 7.7750 -2.9783 0.2766 17 7 8.5788 -4.1145 0.7342 18 6 9.8770 -3.9376 1.0503 19 8 10.3798 -2.8380 0.9555 20 6 10.7040 -5.1064 1.5205 21 6 10.1700 -5.6520 2.8619 22 6 11.4044 -6.0862 3.6289 23 6 11.5291 -6.9180 4.7292 24 6 12.7745 -7.1786 5.2661 25 6 13.9011 -6.6071 4.7043 26 6 13.7790 -5.7774 3.6071 27 6 12.5308 -5.5151 3.0671 28 6 12.1337 -4.6548 1.8867 29 6 5.5226 -2.2906 -0.6141 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 4.6684 -2.0660 2.0714 33 1 3.5794 -3.4735 1.8645 34 1 5.3263 -4.8906 1.2438 35 1 6.3263 -3.7132 2.1400 36 1 8.2131 -2.5659 -0.6322 37 1 7.7556 -2.2116 1.0510 38 1 8.1765 -4.9938 0.8104 39 1 10.7273 -5.8914 0.7647 40 1 9.6438 -4.8680 3.4065 41 1 9.5098 -6.5017 2.6887 42 1 10.6494 -7.3647 5.1686 43 1 12.8682 -7.8273 6.1243 44 1 14.8759 -6.8101 5.1226 45 1 14.6595 -5.3317 3.1686 46 1 12.8104 -4.8257 1.0495 47 1 12.1374 -3.6017 2.1680 48 1 5.4810 -2.3763 -1.6999 49 1 5.9446 -1.3290 -0.3223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086811921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:21 Heat of formation + Delta-G solvation = -38.456707 kcal Electronic energy + Delta-G solvation = -26790.014685 eV Core-core repulsion = 23100.919878 eV Total energy + Delta-G solvation = -3689.094806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60209 -40.32350 -39.41466 -36.54027 -36.27365 -35.00002 -33.03001 -32.31343 -30.91812 -29.87259 -28.95062 -28.20048 -26.03364 -24.61895 -23.98152 -22.39577 -21.82556 -21.61207 -20.92672 -20.43373 -19.55693 -18.34558 -17.29782 -17.13071 -16.93171 -16.70631 -16.49606 -16.01299 -15.84445 -15.57046 -15.26567 -14.76989 -14.40576 -14.26163 -14.15932 -14.10475 -14.05855 -13.85997 -13.65501 -13.40371 -13.15998 -13.11593 -12.68648 -12.38979 -12.19764 -12.16169 -12.10626 -12.09378 -11.94210 -11.84516 -11.69988 -11.67233 -11.50252 -11.24887 -10.94380 -10.85966 -10.08040 -9.71041 -9.42714 -9.27640 -8.02544 -5.34631 0.43786 0.48455 1.37251 1.39541 1.46797 1.59911 2.16401 2.47772 2.84628 3.28235 3.30563 3.46511 3.58847 3.68116 3.78918 3.91959 4.03172 4.14737 4.15827 4.18216 4.31434 4.32411 4.39641 4.48838 4.62089 4.64210 4.65723 4.68626 4.74538 4.75344 4.79647 4.84978 4.88865 4.94925 5.07030 5.07330 5.13333 5.18699 5.21977 5.24531 5.37855 5.47662 5.55427 5.55741 5.57489 5.63239 5.71519 5.78692 6.12287 6.22917 6.57194 7.08732 7.25378 7.87281 8.04489 9.19030 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.001909 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.438143 B =14665.038085 C =14979.077325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.227 4.227 8 H 0.058 0.942 9 N -0.750 5.750 10 C 0.166 3.834 11 H 0.056 0.944 12 C -0.141 4.141 13 C -0.108 4.108 14 C -0.084 4.084 15 H 0.104 0.896 16 C 0.132 3.868 17 N -0.710 5.710 18 C 0.520 3.480 19 O -0.585 6.585 20 C -0.101 4.101 21 C -0.066 4.066 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.111 4.111 28 C -0.068 4.068 29 C -0.120 4.120 30 H 0.257 0.743 31 H 0.364 0.636 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.418 0.582 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.172 -19.213 6.755 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.359 4.359 8 H 0.076 0.924 9 N -0.393 5.393 10 C 0.058 3.942 11 H 0.074 0.926 12 C -0.182 4.182 13 C -0.146 4.146 14 C -0.103 4.103 15 H 0.122 0.878 16 C 0.008 3.992 17 N -0.362 5.362 18 C 0.307 3.693 19 O -0.466 6.466 20 C -0.122 4.122 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.111 4.111 28 C -0.105 4.105 29 C -0.159 4.159 30 H 0.065 0.935 31 H 0.197 0.803 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.255 0.745 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.147 0.853 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 30.289 -18.516 6.662 36.120 hybrid contribution -0.399 1.226 0.108 1.294 sum 29.890 -17.290 6.769 35.188 Atomic orbital electron populations 1.69879 1.07047 1.26531 1.60035 1.25482 0.96101 1.01128 1.03024 0.85437 0.78524 0.79907 0.78064 1.20411 1.22429 1.18013 1.19076 0.82754 0.93375 1.40650 0.92383 1.42791 1.02432 1.04077 1.89954 1.21460 0.91403 0.86959 0.94387 0.92616 1.22898 0.97768 0.98836 0.98680 1.22140 0.95782 0.99765 0.96873 1.21828 0.91944 0.98621 0.97941 0.87827 1.21360 0.90123 0.88597 0.99131 1.45881 1.09880 1.13400 1.67008 1.20779 0.82444 0.89890 0.76170 1.90703 1.72526 1.28334 1.54992 1.21985 0.94352 0.96252 0.99648 1.21046 0.95427 1.01689 0.92147 1.20772 0.95603 0.97948 0.96793 1.20922 0.98715 0.98133 0.95502 1.21388 0.92230 1.00361 1.00593 1.21365 0.99882 0.97222 0.95949 1.20890 0.96617 0.99265 0.97161 1.20722 0.94144 0.98332 0.97927 1.20881 0.94872 0.98854 0.95941 1.22549 0.94251 0.98588 1.00511 0.93451 0.80329 0.93591 0.93526 0.89702 0.91135 0.92009 0.93052 0.74483 0.84688 0.90557 0.86971 0.84503 0.83817 0.83950 0.85271 0.89557 0.90834 0.90657 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.49 13.97 21.65 0.30 -63.18 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.95 46.20 27.73 68.60 1.90 48.10 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 7 C -0.23 -12.95 10.44 84.04 0.88 -12.07 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.75 -34.72 5.03 -316.89 -1.59 -36.31 16 10 C 0.17 5.92 3.56 46.27 0.16 6.08 16 11 H 0.06 2.08 8.09 -2.39 -0.02 2.06 16 12 C -0.14 -4.43 6.51 31.67 0.21 -4.22 16 13 C -0.11 -2.18 6.19 31.32 0.19 -1.98 16 14 C -0.08 -1.59 2.96 -10.07 -0.03 -1.62 16 15 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 16 C 0.13 2.59 4.69 86.38 0.41 3.00 16 17 N -0.71 -10.66 5.33 -463.05 -2.47 -13.13 16 18 C 0.52 10.01 7.05 87.66 0.62 10.62 16 19 O -0.59 -17.05 15.53 -3.04 -0.05 -17.09 16 20 C -0.10 -1.33 3.46 -10.63 -0.04 -1.37 16 21 C -0.07 -0.76 6.32 30.62 0.19 -0.56 16 22 C -0.11 -1.64 6.15 -19.50 -0.12 -1.76 16 23 C -0.11 -1.49 10.04 22.30 0.22 -1.26 16 24 C -0.13 -1.51 10.05 22.24 0.22 -1.29 16 25 C -0.13 -1.56 10.05 22.24 0.22 -1.33 16 26 C -0.12 -1.78 10.04 22.30 0.22 -1.56 16 27 C -0.11 -1.82 6.14 -19.60 -0.12 -1.94 16 28 C -0.07 -1.13 6.08 30.51 0.19 -0.94 16 29 C -0.12 -3.21 5.98 31.66 0.19 -3.02 16 30 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 31 H 0.36 16.36 5.63 -92.71 -0.52 15.84 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.32 7.62 -2.38 -0.02 1.30 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.42 3.53 8.35 -92.71 -0.77 2.75 16 39 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.05 7.89 -2.38 -0.02 1.03 16 41 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.01 8.06 -2.92 -0.02 0.99 16 44 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.13 1.52 8.06 -2.92 -0.02 1.50 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.07 1.60 7.03 -2.39 -0.02 1.59 16 48 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 Total: -1.00 -76.17 391.87 1.78 -74.39 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.41 Total: 25.92 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.09 Total: -18.69 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.76 Total: -112.63 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.05 Total: -17.09 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Total: -76.17 1.78 -74.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086811921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.934 kcal (2) G-P(sol) polarization free energy of solvation -76.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds