Wall clock time and date at job start Tue Mar 31 2020 15:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39905 * 109.47001 * 2 1 4 4 F 1.39901 * 109.46950 * 240.00511 * 2 1 3 5 5 C 1.52999 * 109.47337 * 120.00120 * 2 1 3 6 6 C 1.50696 * 109.47284 * 180.02562 * 5 2 1 7 7 O 1.21287 * 120.00089 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00440 * 180.02562 * 6 5 2 9 9 C 1.48171 * 127.83307 * 359.95699 * 8 6 5 10 10 C 1.54588 * 104.84500 * 139.91642 * 9 8 6 11 11 H 1.09002 * 111.93378 * 263.70725 * 10 9 8 12 12 C 1.55265 * 104.36573 * 24.66404 * 10 9 8 13 13 H 1.08996 * 111.05101 * 239.13360 * 12 10 9 14 14 C 1.48140 * 127.84245 * 179.97438 * 8 6 5 15 15 C 1.53025 * 109.86017 * 116.17211 * 12 10 9 16 16 H 1.08999 * 109.63791 * 180.26123 * 15 12 10 17 17 C 1.53042 * 109.21529 * 300.40335 * 15 12 10 18 18 C 1.52937 * 110.01501 * 59.32295 * 17 15 12 19 19 C 1.53227 * 108.90041 * 140.75922 * 10 9 8 20 20 H 1.09002 * 110.49517 * 68.61472 * 19 10 9 21 21 N 1.47696 * 108.05510 * 189.61715 * 19 10 9 22 22 C 1.36932 * 122.07265 * 239.04269 * 21 19 10 23 23 H 1.07997 * 119.99783 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00088 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99798 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99697 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47271 * 60.00134 * 26 24 22 28 28 H 1.48500 * 109.46824 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47205 * 299.99801 * 26 24 22 30 30 C 1.47637 * 115.85858 * 59.31094 * 21 19 10 31 31 H 1.09002 * 109.46775 * 299.99446 * 1 2 3 32 32 H 1.08997 * 109.47028 * 59.99805 * 1 2 3 33 33 H 1.08999 * 109.46885 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47191 * 60.00116 * 5 2 1 35 35 H 1.08994 * 109.47371 * 300.00243 * 5 2 1 36 36 H 1.09000 * 110.42225 * 259.10709 * 9 8 6 37 37 H 1.08998 * 110.42215 * 21.45670 * 9 8 6 38 38 H 1.08999 * 110.40038 * 100.57514 * 14 8 6 39 39 H 1.08998 * 110.39280 * 338.17120 * 14 8 6 40 40 H 1.08997 * 109.37824 * 299.15628 * 17 15 12 41 41 H 1.08992 * 109.29197 * 179.43355 * 17 15 12 42 42 H 1.09007 * 109.45319 * 240.66388 * 18 17 15 43 43 H 1.08997 * 109.43430 * 120.71710 * 18 17 15 44 44 H 0.96996 * 119.99972 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.99559 * 119.46155 * 30 21 19 46 46 H 1.08997 * 109.99852 * 240.84907 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 3.5470 -0.7207 1.2495 7 8 4.1535 -0.1955 0.3398 8 7 4.2210 -1.3046 2.2600 9 6 3.6621 -1.9909 3.4483 10 6 4.5713 -3.2235 3.6580 11 1 4.1507 -4.1214 3.2052 12 6 5.9187 -2.8250 2.9975 13 1 6.1850 -3.5200 2.2012 14 6 5.6886 -1.4057 2.4350 15 6 7.0200 -2.7652 4.0583 16 1 7.9631 -2.4808 3.5916 17 6 6.6400 -1.7318 5.1212 18 6 5.3107 -2.1156 5.7728 19 6 4.7970 -3.4239 5.1602 20 1 3.8729 -3.7361 5.6467 21 7 5.8447 -4.4505 5.3327 22 6 5.6178 -5.6127 6.0204 23 1 4.6480 -5.8013 6.4567 24 6 6.6338 -6.5488 6.1559 25 7 7.8152 -6.3195 5.6229 26 14 6.3239 -8.1344 7.0935 27 1 5.2252 -8.8896 6.4394 28 1 7.5593 -8.9584 7.0945 29 1 5.9410 -7.8156 8.4924 30 6 7.1538 -4.1434 4.7230 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6768 -1.7489 1.2492 35 1 1.6768 -0.2075 2.1392 36 1 3.6976 -1.3350 4.3181 37 1 2.6381 -2.3111 3.2560 38 1 6.0394 -0.6550 3.1431 39 1 6.1942 -1.2904 1.4762 40 1 6.5444 -0.7514 4.6546 41 1 7.4189 -1.6954 5.8828 42 1 4.5809 -1.3240 5.6024 43 1 5.4574 -2.2496 6.8445 44 1 8.5250 -6.9737 5.7172 45 1 7.9253 -4.1129 5.4923 46 1 7.4019 -4.8957 3.9743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087387801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:30 Heat of formation + Delta-G solvation = -96.996975 kcal Electronic energy + Delta-G solvation = -29901.969722 eV Core-core repulsion = 25656.106889 eV Total energy + Delta-G solvation = -4245.862833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.97851 -46.96419 -40.81530 -38.94022 -35.79640 -33.58475 -33.18053 -31.80331 -30.44928 -29.94601 -28.86621 -27.25874 -25.43653 -23.97417 -22.12088 -22.04167 -21.03688 -20.76233 -19.48392 -17.75951 -17.57189 -17.20995 -16.80563 -16.35625 -15.96269 -15.75863 -15.21334 -14.92999 -14.74458 -14.48247 -13.93693 -13.79744 -13.59516 -13.32266 -13.11866 -13.05062 -12.84182 -12.54764 -12.40079 -12.36023 -12.22125 -12.12648 -12.09289 -11.56655 -11.34960 -11.23936 -11.14666 -10.94652 -10.81648 -10.59400 -10.45623 -10.22770 -10.01192 -9.73565 -9.71233 -9.34899 -9.25849 -8.57117 -8.52330 -6.89166 -5.69041 -3.06430 2.57090 2.83417 3.37666 3.42529 3.43899 3.55898 3.81059 4.12060 4.17136 4.44490 4.62602 4.81683 4.82993 4.96037 5.00439 5.09618 5.20562 5.29818 5.37125 5.43034 5.43624 5.45198 5.51960 5.53534 5.65622 5.73250 5.75304 5.95607 6.03847 6.08045 6.11587 6.16970 6.29987 6.43605 6.47828 6.64569 6.73160 6.80316 6.89150 6.96748 7.58148 7.60044 7.67778 7.88187 8.10568 8.29069 9.22613 9.83532 10.37440 11.36076 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.003056 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.799874 B = 9158.758249 C = 9588.995066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.307 3.693 3 F -0.194 7.194 4 F -0.193 7.193 5 C -0.185 4.185 6 C 0.531 3.469 7 O -0.533 6.533 8 N -0.617 5.617 9 C 0.093 3.907 10 C -0.105 4.105 11 H 0.083 0.917 12 C -0.079 4.079 13 H 0.076 0.924 14 C 0.102 3.898 15 C -0.110 4.110 16 H 0.066 0.934 17 C -0.106 4.106 18 C -0.134 4.134 19 C 0.180 3.820 20 H 0.067 0.933 21 N -0.599 5.599 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.007 4.007 25 N -0.922 5.922 26 Si 0.909 3.091 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.204 3.796 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.252 0.748 45 H 0.051 0.949 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.824 12.046 -5.698 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 F -0.175 7.175 4 F -0.174 7.174 5 C -0.226 4.226 6 C 0.319 3.681 7 O -0.409 6.409 8 N -0.351 5.351 9 C -0.030 4.030 10 C -0.127 4.127 11 H 0.101 0.899 12 C -0.099 4.099 13 H 0.094 0.906 14 C -0.019 4.019 15 C -0.130 4.130 16 H 0.084 0.916 17 C -0.144 4.144 18 C -0.173 4.173 19 C 0.071 3.929 20 H 0.085 0.915 21 N -0.323 5.323 22 C -0.366 4.366 23 H 0.092 0.908 24 C -0.203 4.203 25 N -0.570 5.570 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.080 3.920 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.364 12.229 -6.267 18.485 hybrid contribution 0.001 -0.946 0.488 1.064 sum -12.363 11.283 -5.779 17.707 Atomic orbital electron populations 1.22798 0.91251 1.05593 1.05571 1.20626 0.92973 0.76024 0.83394 1.93039 1.90610 1.37019 1.96787 1.93047 1.90589 1.80760 1.52957 1.22821 0.95216 1.05017 0.99538 1.19702 0.88722 0.78498 0.81202 1.90779 1.69877 1.45137 1.35134 1.48979 1.08520 1.55490 1.22101 1.22942 0.97802 0.94617 0.87609 1.22943 0.94111 0.95865 0.99742 0.89906 1.22135 0.95816 0.94405 0.97533 0.90560 1.22736 0.79771 0.98197 1.01243 1.21816 0.96481 0.99573 0.95110 0.91591 1.21484 0.97737 0.97184 0.97953 1.22182 0.96575 0.98052 1.00488 1.20502 0.92534 0.89021 0.90832 0.91471 1.44598 1.07544 1.17324 1.62812 1.19216 0.97078 0.93927 1.26394 0.90801 1.24788 0.95963 0.98713 1.00821 1.70009 1.02554 1.35351 1.49082 0.86249 0.76801 0.83356 0.79621 1.21278 1.21701 1.21281 1.21097 0.86863 0.88420 0.95661 0.89131 0.89705 0.89078 0.85945 0.86055 0.89676 0.91108 0.90250 0.90672 0.93197 0.92449 0.93006 0.92067 0.93777 0.93040 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 9.38 37.16 0.35 -0.85 16 2 C 0.31 3.31 1.85 -26.73 -0.05 3.26 16 3 F -0.19 -2.63 16.14 2.25 0.04 -2.59 16 4 F -0.19 -2.69 16.15 2.25 0.04 -2.65 16 5 C -0.19 -1.79 4.27 -27.89 -0.12 -1.91 16 6 C 0.53 7.67 7.68 -10.99 -0.08 7.58 16 7 O -0.53 -9.91 15.10 5.55 0.08 -9.82 16 8 N -0.62 -8.48 3.32 -169.16 -0.56 -9.05 16 9 C 0.09 1.12 6.18 -2.29 -0.01 1.10 16 10 C -0.11 -1.63 3.47 -88.47 -0.31 -1.94 16 11 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.08 -1.28 3.14 -88.67 -0.28 -1.56 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.10 1.50 6.34 -2.41 -0.02 1.48 16 15 C -0.11 -1.93 2.86 -90.28 -0.26 -2.19 16 16 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.11 -1.67 5.31 -26.74 -0.14 -1.81 16 18 C -0.13 -2.09 5.52 -26.60 -0.15 -2.24 16 19 C 0.18 3.19 3.16 -66.99 -0.21 2.98 16 20 H 0.07 1.16 7.99 -51.93 -0.42 0.75 16 21 N -0.60 -13.76 2.87 -163.17 -0.47 -14.23 16 22 C -0.24 -6.15 9.99 -15.06 -0.15 -6.30 16 23 H 0.07 1.84 7.79 -52.49 -0.41 1.43 16 24 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 25 N -0.92 -25.91 9.77 55.49 0.54 -25.37 16 26 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.20 4.62 4.37 -3.11 -0.01 4.61 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.95 5.21 -51.93 -0.27 0.68 16 37 H 0.07 0.67 7.30 -51.93 -0.38 0.29 16 38 H 0.08 1.11 5.31 -51.93 -0.28 0.84 16 39 H 0.07 1.17 7.88 -51.93 -0.41 0.76 16 40 H 0.05 0.69 5.79 -51.93 -0.30 0.39 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.67 5.67 -51.93 -0.29 0.37 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.05 1.33 7.22 -51.93 -0.38 0.95 16 46 H 0.05 1.27 7.24 -51.93 -0.38 0.90 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -32.14 350.16 -8.47 -40.62 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.86 Total: -0.45 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.54 Total: 1.94 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.49 Total: -48.64 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.14 -8.47 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.380 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds