Wall clock time and date at job start Tue Mar 31 2020 15:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39905 * 109.47001 * 2 1 4 4 F 1.39901 * 109.46950 * 240.00511 * 2 1 3 5 5 C 1.52999 * 109.47337 * 120.00120 * 2 1 3 6 6 C 1.50696 * 109.47284 * 180.02562 * 5 2 1 7 7 O 1.21287 * 120.00089 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00440 * 180.02562 * 6 5 2 9 9 C 1.48171 * 127.83307 * 359.95699 * 8 6 5 10 10 C 1.54588 * 104.84500 * 139.91642 * 9 8 6 11 11 H 1.09002 * 111.93378 * 263.70725 * 10 9 8 12 12 C 1.55265 * 104.36573 * 24.66404 * 10 9 8 13 13 H 1.08996 * 111.05101 * 239.13360 * 12 10 9 14 14 C 1.48140 * 127.84245 * 179.97438 * 8 6 5 15 15 C 1.53025 * 109.86017 * 116.17211 * 12 10 9 16 16 H 1.08999 * 109.63791 * 180.26123 * 15 12 10 17 17 C 1.53042 * 109.21529 * 300.40335 * 15 12 10 18 18 C 1.52937 * 110.01501 * 59.32295 * 17 15 12 19 19 C 1.53227 * 108.90041 * 140.75922 * 10 9 8 20 20 H 1.09002 * 110.49517 * 68.61472 * 19 10 9 21 21 N 1.47696 * 108.05510 * 189.61715 * 19 10 9 22 22 C 1.36932 * 122.07265 * 239.04269 * 21 19 10 23 23 H 1.07997 * 119.99783 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00088 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99798 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99697 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47271 * 60.00134 * 26 24 22 28 28 H 1.48500 * 109.46824 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47205 * 299.99801 * 26 24 22 30 30 C 1.47637 * 115.85858 * 59.31094 * 21 19 10 31 31 H 1.09002 * 109.46775 * 299.99446 * 1 2 3 32 32 H 1.08997 * 109.47028 * 59.99805 * 1 2 3 33 33 H 1.08999 * 109.46885 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47191 * 60.00116 * 5 2 1 35 35 H 1.08994 * 109.47371 * 300.00243 * 5 2 1 36 36 H 1.09000 * 110.42225 * 259.10709 * 9 8 6 37 37 H 1.08998 * 110.42215 * 21.45670 * 9 8 6 38 38 H 1.08999 * 110.40038 * 100.57514 * 14 8 6 39 39 H 1.08998 * 110.39280 * 338.17120 * 14 8 6 40 40 H 1.08997 * 109.37824 * 299.15628 * 17 15 12 41 41 H 1.08992 * 109.29197 * 179.43355 * 17 15 12 42 42 H 1.09007 * 109.45319 * 240.66388 * 18 17 15 43 43 H 1.08997 * 109.43430 * 120.71710 * 18 17 15 44 44 H 0.96996 * 119.99972 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.99559 * 119.46155 * 30 21 19 46 46 H 1.08997 * 109.99852 * 240.84907 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 3.5470 -0.7207 1.2495 7 8 4.1535 -0.1955 0.3398 8 7 4.2210 -1.3046 2.2600 9 6 3.6621 -1.9909 3.4483 10 6 4.5713 -3.2235 3.6580 11 1 4.1507 -4.1214 3.2052 12 6 5.9187 -2.8250 2.9975 13 1 6.1850 -3.5200 2.2012 14 6 5.6886 -1.4057 2.4350 15 6 7.0200 -2.7652 4.0583 16 1 7.9631 -2.4808 3.5916 17 6 6.6400 -1.7318 5.1212 18 6 5.3107 -2.1156 5.7728 19 6 4.7970 -3.4239 5.1602 20 1 3.8729 -3.7361 5.6467 21 7 5.8447 -4.4505 5.3327 22 6 5.6178 -5.6127 6.0204 23 1 4.6480 -5.8013 6.4567 24 6 6.6338 -6.5488 6.1559 25 7 7.8152 -6.3195 5.6229 26 14 6.3239 -8.1344 7.0935 27 1 5.2252 -8.8896 6.4394 28 1 7.5593 -8.9584 7.0945 29 1 5.9410 -7.8156 8.4924 30 6 7.1538 -4.1434 4.7230 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6768 -1.7489 1.2492 35 1 1.6768 -0.2075 2.1392 36 1 3.6976 -1.3350 4.3181 37 1 2.6381 -2.3111 3.2560 38 1 6.0394 -0.6550 3.1431 39 1 6.1942 -1.2904 1.4762 40 1 6.5444 -0.7514 4.6546 41 1 7.4189 -1.6954 5.8828 42 1 4.5809 -1.3240 5.6024 43 1 5.4574 -2.2496 6.8445 44 1 8.5250 -6.9737 5.7172 45 1 7.9253 -4.1129 5.4923 46 1 7.4019 -4.8957 3.9743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087387801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:29 Heat of formation + Delta-G solvation = -116.483538 kcal Electronic energy + Delta-G solvation = -29902.814723 eV Core-core repulsion = 25656.106889 eV Total energy + Delta-G solvation = -4246.707834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84326 -47.86726 -42.11271 -40.14935 -37.17763 -35.02205 -34.19477 -33.24176 -31.71888 -31.58799 -29.76445 -28.50277 -27.01683 -25.29131 -23.64858 -22.95229 -22.41495 -22.14237 -20.53749 -19.16753 -18.58467 -18.36767 -17.90921 -17.53468 -17.10029 -16.90812 -16.71119 -16.34099 -15.95304 -15.83260 -15.52422 -14.77412 -14.68110 -14.24486 -14.20998 -14.12738 -13.85569 -13.78188 -13.71499 -13.36745 -13.29121 -13.05544 -13.03831 -12.99835 -12.85251 -12.79778 -12.54787 -12.33256 -12.17950 -12.08286 -11.98865 -11.81141 -11.73592 -11.15973 -11.00579 -10.78633 -10.68728 -10.46689 -9.70290 -8.80030 -7.71457 -5.09487 1.48523 1.50200 1.53392 1.56370 1.83840 2.54324 2.83747 3.14617 3.29961 3.40737 3.51052 3.54093 3.65861 3.77480 3.86529 4.01157 4.15844 4.24466 4.30078 4.31665 4.37986 4.41752 4.45942 4.56002 4.64412 4.68878 4.70149 4.78519 4.86550 4.87361 4.93178 5.03015 5.07176 5.09819 5.15926 5.28982 5.39783 5.46587 5.54231 5.59022 5.66473 5.80786 5.92989 6.32204 6.53218 7.04636 7.21742 7.93841 8.44289 9.31438 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.003056 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.799874 B = 9158.758249 C = 9588.995066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.286 3.714 3 F -0.216 7.216 4 F -0.219 7.219 5 C -0.178 4.178 6 C 0.522 3.478 7 O -0.584 6.584 8 N -0.616 5.616 9 C 0.104 3.896 10 C -0.101 4.101 11 H 0.067 0.933 12 C -0.077 4.077 13 H 0.052 0.948 14 C 0.110 3.890 15 C -0.102 4.102 16 H 0.069 0.931 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.172 3.828 20 H 0.077 0.923 21 N -0.617 5.617 22 C -0.238 4.238 23 H 0.085 0.915 24 C -0.070 4.070 25 N -0.954 5.954 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.303 1.303 29 H -0.278 1.278 30 C 0.217 3.783 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.241 0.759 45 H 0.010 0.990 46 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 13.744 -4.771 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.250 3.750 3 F -0.197 7.197 4 F -0.200 7.200 5 C -0.217 4.217 6 C 0.312 3.688 7 O -0.464 6.464 8 N -0.349 5.349 9 C -0.018 4.018 10 C -0.123 4.123 11 H 0.086 0.914 12 C -0.097 4.097 13 H 0.070 0.930 14 C -0.012 4.012 15 C -0.122 4.122 16 H 0.088 0.912 17 C -0.140 4.140 18 C -0.166 4.166 19 C 0.065 3.935 20 H 0.096 0.904 21 N -0.340 5.340 22 C -0.368 4.368 23 H 0.102 0.898 24 C -0.262 4.262 25 N -0.604 5.604 26 Si 0.799 3.201 27 H -0.205 1.205 28 H -0.230 1.230 29 H -0.204 1.204 30 C 0.092 3.908 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -16.194 13.949 -5.323 22.026 hybrid contribution 1.188 -1.489 0.175 1.913 sum -15.006 12.460 -5.147 20.173 Atomic orbital electron populations 1.22816 0.87308 1.07319 1.06758 1.21423 0.95677 0.74917 0.82979 1.92992 1.91178 1.38682 1.96842 1.92994 1.91204 1.81206 1.54620 1.22973 0.91096 1.07197 1.00484 1.20621 0.90755 0.77307 0.80080 1.90763 1.71375 1.47346 1.36946 1.49031 1.07885 1.55333 1.22626 1.22977 0.98555 0.92696 0.87550 1.22771 0.94436 0.97429 0.97619 0.91415 1.22003 0.95902 0.95311 0.96467 0.92988 1.22550 0.81103 0.96939 1.00648 1.21646 0.97650 0.96962 0.95923 0.91236 1.21467 0.97687 0.97778 0.97025 1.22112 0.97261 0.97940 0.99255 1.20839 0.91490 0.88625 0.92508 0.90441 1.44877 1.08841 1.17914 1.62409 1.19672 0.97108 0.94721 1.25251 0.89755 1.25562 0.96101 1.01911 1.02648 1.70275 1.03250 1.35833 1.51021 0.85283 0.76103 0.79953 0.78789 1.20497 1.22986 1.20401 1.20604 0.86280 0.90379 0.93500 0.86598 0.89960 0.87045 0.83003 0.82124 0.87545 0.87163 0.88744 0.92256 0.90017 0.93651 0.88602 0.93468 0.94981 0.97179 0.97805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.38 71.98 0.68 -0.86 16 2 C 0.29 5.39 1.85 30.59 0.06 5.45 16 3 F -0.22 -5.51 16.14 44.97 0.73 -4.79 16 4 F -0.22 -5.89 16.15 44.97 0.73 -5.17 16 5 C -0.18 -2.61 4.27 29.85 0.13 -2.48 16 6 C 0.52 13.58 7.68 87.66 0.67 14.25 16 7 O -0.58 -21.27 15.10 -3.05 -0.05 -21.32 16 8 N -0.62 -14.77 3.32 -807.50 -2.68 -17.45 16 9 C 0.10 1.94 6.18 86.60 0.54 2.48 16 10 C -0.10 -2.91 3.47 -9.40 -0.03 -2.94 16 11 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.08 -2.45 3.14 -9.53 -0.03 -2.48 16 13 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 14 C 0.11 3.01 6.34 86.54 0.55 3.56 16 15 C -0.10 -3.60 2.86 -10.57 -0.03 -3.63 16 16 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.10 -3.01 5.31 30.59 0.16 -2.85 16 18 C -0.13 -3.55 5.52 30.68 0.17 -3.38 16 19 C 0.17 5.71 3.16 44.95 0.14 5.85 16 20 H 0.08 2.42 7.99 -2.39 -0.02 2.40 16 21 N -0.62 -28.65 2.87 -670.15 -1.92 -30.57 16 22 C -0.24 -12.44 9.99 84.04 0.84 -11.60 16 23 H 0.08 4.13 7.79 -2.91 -0.02 4.11 16 24 C -0.07 -3.87 5.47 84.86 0.46 -3.40 16 25 N -0.95 -56.60 9.77 21.65 0.21 -56.38 16 26 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 29 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 30 C 0.22 10.39 4.37 86.36 0.38 10.77 16 31 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.15 1.36 7.95 -2.39 -0.02 1.34 16 35 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.62 5.21 -2.39 -0.01 1.61 16 37 H 0.11 1.31 7.30 -2.39 -0.02 1.29 16 38 H 0.09 2.32 5.31 -2.39 -0.01 2.31 16 39 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16 40 H 0.08 1.93 5.79 -2.39 -0.01 1.91 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.88 5.67 -2.38 -0.01 1.87 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.01 0.56 7.22 -2.39 -0.02 0.54 16 46 H 0.00 0.21 7.24 -2.39 -0.02 0.19 16 Total: -1.00 -77.24 350.16 4.71 -72.53 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.99 Total: 7.54 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.68 Total: 8.74 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.39 Total: -104.40 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 9 Polarization: -11.41 SS G_CDS: 1.45 Total: -9.95 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -77.24 4.71 -72.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.953 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds