Wall clock time and date at job start Tue Mar 31 2020 15:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39892 * 109.47418 * 2 1 4 4 F 1.39897 * 109.46894 * 239.99351 * 2 1 3 5 5 C 1.53001 * 109.46578 * 119.99896 * 2 1 3 6 6 C 1.50702 * 109.46972 * 179.97438 * 5 2 1 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00204 * 180.02562 * 6 5 2 9 9 C 1.48153 * 127.83831 * 180.02562 * 8 6 5 10 10 C 1.54380 * 104.58794 * 140.41279 * 9 8 6 11 11 H 1.09000 * 110.81783 * 263.71810 * 10 9 8 12 12 C 1.54169 * 105.48260 * 23.68898 * 10 9 8 13 13 H 1.09005 * 110.99986 * 240.13731 * 12 10 9 14 14 C 1.48150 * 127.83553 * 359.97438 * 8 6 5 15 15 C 1.52834 * 109.38646 * 115.69058 * 12 10 9 16 16 H 1.08999 * 110.40033 * 183.11490 * 15 12 10 17 17 C 1.53323 * 108.14905 * 61.57854 * 15 12 10 18 18 C 1.53407 * 109.52931 * 298.72946 * 17 15 12 19 19 C 1.52982 * 109.06427 * 141.54596 * 10 9 8 20 20 H 1.09002 * 109.63293 * 65.48830 * 19 10 9 21 21 C 1.53602 * 109.11353 * 305.40019 * 19 10 9 22 22 N 1.47644 * 106.73761 * 300.24101 * 21 19 10 23 23 C 1.36931 * 122.06303 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00098 * 180.02562 * 23 22 21 25 25 C 1.38812 * 120.00429 * 0.02562 * 23 22 21 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.09005 * 109.47250 * 300.00227 * 1 2 3 32 32 H 1.09002 * 109.47016 * 59.99901 * 1 2 3 33 33 H 1.08996 * 109.47792 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47255 * 59.99983 * 5 2 1 35 35 H 1.08992 * 109.47451 * 299.99755 * 5 2 1 36 36 H 1.09004 * 110.41513 * 21.63403 * 9 8 6 37 37 H 1.09005 * 110.51590 * 259.24042 * 9 8 6 38 38 H 1.09004 * 110.40809 * 338.30668 * 14 8 6 39 39 H 1.08997 * 110.40713 * 100.61606 * 14 8 6 40 40 H 1.08997 * 109.45039 * 58.88065 * 17 15 12 41 41 H 1.08999 * 109.44891 * 178.80238 * 17 15 12 42 42 H 1.08996 * 109.62718 * 240.68975 * 18 17 15 43 43 H 1.08998 * 109.25960 * 120.94537 * 18 17 15 44 44 H 1.09004 * 110.00027 * 180.93211 * 21 19 10 45 45 H 1.09006 * 110.00022 * 59.54631 * 21 19 10 46 46 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9962 -0.6596 -1.1422 5 6 2.0398 -0.7213 1.2493 6 6 3.5468 -0.7219 1.2491 7 8 4.1534 -0.1967 0.3395 8 7 4.2207 -1.3060 2.2596 9 6 5.6884 -1.4072 2.4345 10 6 5.9165 -1.1802 3.9444 11 1 6.1717 -0.1398 4.1456 12 6 4.5850 -1.5585 4.6233 13 1 4.1675 -0.7096 5.1647 14 6 3.6617 -1.9917 3.4480 15 6 4.8030 -2.7717 5.5270 16 1 3.8600 -3.0874 5.9731 17 6 5.8185 -2.3851 6.6087 18 6 7.1508 -2.0060 5.9493 19 6 7.0277 -2.1140 4.4278 20 1 7.9700 -1.8377 3.9545 21 6 6.6672 -3.5599 4.0550 22 7 5.3862 -3.8644 4.7229 23 6 4.7737 -5.0828 4.5994 24 1 3.8364 -5.2695 5.1025 25 6 5.3573 -6.0781 3.8276 26 7 6.4993 -5.8505 3.2141 27 14 4.5177 -7.7376 3.6529 28 1 5.3350 -8.6161 2.7780 29 1 4.3775 -8.3648 4.9917 30 1 3.1734 -7.5513 3.0502 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6764 -1.7490 1.2493 35 1 1.6765 -0.2074 2.1392 36 1 6.1946 -0.6363 1.8534 37 1 6.0408 -2.3961 2.1412 38 1 2.6395 -1.6608 3.6319 39 1 3.6918 -3.0727 3.3122 40 1 5.4380 -1.5365 7.1771 41 1 5.9741 -3.2302 7.2792 42 1 7.9357 -2.6775 6.2974 43 1 7.4072 -0.9817 6.2197 44 1 7.4425 -4.2402 4.4077 45 1 6.5548 -3.6494 2.9745 46 1 6.9070 -6.5458 2.6745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087387802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:33 Heat of formation + Delta-G solvation = -100.885135 kcal Electronic energy + Delta-G solvation = -30441.815673 eV Core-core repulsion = 26195.784237 eV Total energy + Delta-G solvation = -4246.031436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.81627 -46.80235 -40.58506 -38.74493 -35.52739 -33.47809 -33.26214 -31.70536 -30.47283 -29.80104 -28.61183 -26.86819 -25.35518 -24.10778 -22.04851 -21.88189 -21.12436 -20.55401 -19.19033 -17.60107 -17.53964 -17.04911 -16.54269 -15.97768 -15.79947 -15.71270 -15.12700 -14.76718 -14.59762 -14.31428 -14.13888 -13.70537 -13.24412 -13.17343 -12.99302 -12.86175 -12.74492 -12.59214 -12.24128 -12.21387 -12.06296 -11.98557 -11.77161 -11.51692 -11.26841 -11.12345 -11.03748 -10.95012 -10.73047 -10.57882 -10.51244 -10.23271 -9.87289 -9.76438 -9.60639 -9.30395 -9.22705 -8.54443 -8.23218 -6.90828 -5.71940 -3.09691 2.83571 3.11978 3.35351 3.40553 3.42839 3.74533 3.98392 4.33748 4.34252 4.43292 4.82356 4.94883 4.99417 5.11025 5.14178 5.19064 5.37126 5.42502 5.44007 5.56724 5.57748 5.62100 5.68670 5.73086 5.74374 5.91091 5.93286 5.99001 6.09338 6.24167 6.32413 6.36104 6.40086 6.51856 6.59067 6.68363 6.69063 6.77947 6.95099 6.99201 7.58549 7.65629 7.87243 7.90136 8.26341 8.37657 9.19627 9.80645 10.34763 11.32592 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.004460 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.913132 B = 6276.936381 C = 7513.134824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.307 3.693 3 F -0.194 7.194 4 F -0.192 7.192 5 C -0.185 4.185 6 C 0.530 3.470 7 O -0.539 6.539 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.081 4.081 11 H 0.065 0.935 12 C -0.110 4.110 13 H 0.072 0.928 14 C 0.102 3.898 15 C 0.179 3.821 16 H 0.069 0.931 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.113 4.113 20 H 0.065 0.935 21 C 0.197 3.803 22 N -0.596 5.596 23 C -0.239 4.239 24 H 0.074 0.926 25 C -0.004 4.004 26 N -0.920 5.920 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.287 1.287 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 10.782 1.683 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 F -0.175 7.175 4 F -0.173 7.173 5 C -0.225 4.225 6 C 0.318 3.682 7 O -0.416 6.416 8 N -0.346 5.346 9 C -0.016 4.016 10 C -0.100 4.100 11 H 0.084 0.916 12 C -0.131 4.131 13 H 0.090 0.910 14 C -0.020 4.020 15 C 0.070 3.930 16 H 0.087 0.913 17 C -0.168 4.168 18 C -0.137 4.137 19 C -0.133 4.133 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.320 5.320 23 C -0.368 4.368 24 H 0.092 0.908 25 C -0.200 4.200 26 N -0.567 5.567 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.213 1.213 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.459 10.936 0.944 13.858 hybrid contribution -0.289 -0.902 -0.068 0.950 sum -8.749 10.034 0.876 13.341 Atomic orbital electron populations 1.22792 0.91394 1.05570 1.05409 1.20616 0.92851 0.75985 0.83520 1.93026 1.90630 1.37086 1.96802 1.93045 1.90590 1.80752 1.52938 1.22803 0.95521 1.04978 0.99209 1.19622 0.88614 0.78550 0.81449 1.90754 1.69870 1.45803 1.35209 1.48893 1.08601 1.54804 1.22278 1.22690 0.79790 1.03246 0.95904 1.21899 0.95802 0.98484 0.93860 0.91631 1.22847 0.94776 0.98976 0.96543 0.90968 1.23000 0.95839 0.99823 0.83361 1.20426 0.94966 0.87419 0.90185 0.91299 1.22113 0.96467 0.99744 0.98476 1.21389 0.97572 0.99402 0.95294 1.21808 0.96873 0.99192 0.95421 0.91662 1.21284 0.87322 0.87348 0.96697 1.44581 1.22398 1.09415 1.55620 1.19172 1.03609 0.88677 1.25356 0.90781 1.24769 0.97215 0.98206 0.99814 1.70002 1.18098 1.32774 1.35813 0.86294 0.78439 0.84083 0.77454 1.21720 1.21293 1.21326 0.89215 0.89806 0.89078 0.85989 0.86289 0.91316 0.88730 0.92221 0.87387 0.93446 0.92230 0.92523 0.93726 0.93132 0.92521 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 9.38 37.16 0.35 -1.20 16 2 C 0.31 3.96 1.85 -26.73 -0.05 3.91 16 3 F -0.19 -2.98 16.14 2.25 0.04 -2.95 16 4 F -0.19 -3.10 16.14 2.25 0.04 -3.06 16 5 C -0.18 -2.28 4.28 -27.88 -0.12 -2.39 16 6 C 0.53 9.21 7.68 -10.99 -0.08 9.13 16 7 O -0.54 -11.42 15.10 5.56 0.08 -11.33 16 8 N -0.61 -10.53 3.32 -168.53 -0.56 -11.09 16 9 C 0.11 1.89 6.35 -2.41 -0.02 1.88 16 10 C -0.08 -1.31 3.09 -89.29 -0.28 -1.59 16 11 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.11 -1.70 3.26 -88.70 -0.29 -1.99 16 13 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 14 C 0.10 1.61 6.28 -1.74 -0.01 1.60 16 15 C 0.18 3.12 2.98 -67.21 -0.20 2.92 16 16 H 0.07 1.17 7.99 -51.93 -0.42 0.75 16 17 C -0.13 -2.05 5.84 -26.35 -0.15 -2.20 16 18 C -0.10 -1.57 5.68 -26.50 -0.15 -1.72 16 19 C -0.11 -1.97 2.87 -90.30 -0.26 -2.23 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 21 C 0.20 4.31 4.02 -3.10 -0.01 4.30 16 22 N -0.60 -12.94 1.97 -163.40 -0.32 -13.26 16 23 C -0.24 -5.88 9.23 -15.06 -0.14 -6.02 16 24 H 0.07 1.75 7.79 -52.49 -0.41 1.35 16 25 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 26 N -0.92 -25.10 9.77 55.49 0.54 -24.55 16 27 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.12 1.11 7.95 -51.93 -0.41 0.70 16 36 H 0.07 1.24 7.88 -51.93 -0.41 0.83 16 37 H 0.09 1.95 5.29 -51.93 -0.27 1.67 16 38 H 0.06 0.75 7.31 -51.93 -0.38 0.37 16 39 H 0.11 2.08 6.29 -51.93 -0.33 1.75 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 1.28 7.23 -51.93 -0.38 0.90 16 45 H 0.06 1.39 4.86 -51.93 -0.25 1.14 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -30.56 352.05 -8.45 -39.01 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.04 Total: 1.83 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.51 Total: 4.20 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.34 Total: -48.90 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.07 Total: -6.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.56 -8.45 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.874 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds