Wall clock time and date at job start Tue Mar 31 2020 15:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39892 * 109.47418 * 2 1 4 4 F 1.39897 * 109.46894 * 239.99351 * 2 1 3 5 5 C 1.53001 * 109.46578 * 119.99896 * 2 1 3 6 6 C 1.50702 * 109.46972 * 179.97438 * 5 2 1 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00204 * 180.02562 * 6 5 2 9 9 C 1.48153 * 127.83831 * 180.02562 * 8 6 5 10 10 C 1.54380 * 104.58794 * 140.41279 * 9 8 6 11 11 H 1.09000 * 110.81783 * 263.71810 * 10 9 8 12 12 C 1.54169 * 105.48260 * 23.68898 * 10 9 8 13 13 H 1.09005 * 110.99986 * 240.13731 * 12 10 9 14 14 C 1.48150 * 127.83553 * 359.97438 * 8 6 5 15 15 C 1.52834 * 109.38646 * 115.69058 * 12 10 9 16 16 H 1.08999 * 110.40033 * 183.11490 * 15 12 10 17 17 C 1.53323 * 108.14905 * 61.57854 * 15 12 10 18 18 C 1.53407 * 109.52931 * 298.72946 * 17 15 12 19 19 C 1.52982 * 109.06427 * 141.54596 * 10 9 8 20 20 H 1.09002 * 109.63293 * 65.48830 * 19 10 9 21 21 C 1.53602 * 109.11353 * 305.40019 * 19 10 9 22 22 N 1.47644 * 106.73761 * 300.24101 * 21 19 10 23 23 C 1.36931 * 122.06303 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00098 * 180.02562 * 23 22 21 25 25 C 1.38812 * 120.00429 * 0.02562 * 23 22 21 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.09005 * 109.47250 * 300.00227 * 1 2 3 32 32 H 1.09002 * 109.47016 * 59.99901 * 1 2 3 33 33 H 1.08996 * 109.47792 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47255 * 59.99983 * 5 2 1 35 35 H 1.08992 * 109.47451 * 299.99755 * 5 2 1 36 36 H 1.09004 * 110.41513 * 21.63403 * 9 8 6 37 37 H 1.09005 * 110.51590 * 259.24042 * 9 8 6 38 38 H 1.09004 * 110.40809 * 338.30668 * 14 8 6 39 39 H 1.08997 * 110.40713 * 100.61606 * 14 8 6 40 40 H 1.08997 * 109.45039 * 58.88065 * 17 15 12 41 41 H 1.08999 * 109.44891 * 178.80238 * 17 15 12 42 42 H 1.08996 * 109.62718 * 240.68975 * 18 17 15 43 43 H 1.08998 * 109.25960 * 120.94537 * 18 17 15 44 44 H 1.09004 * 110.00027 * 180.93211 * 21 19 10 45 45 H 1.09006 * 110.00022 * 59.54631 * 21 19 10 46 46 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9962 -0.6596 -1.1422 5 6 2.0398 -0.7213 1.2493 6 6 3.5468 -0.7219 1.2491 7 8 4.1534 -0.1967 0.3395 8 7 4.2207 -1.3060 2.2596 9 6 5.6884 -1.4072 2.4345 10 6 5.9165 -1.1802 3.9444 11 1 6.1717 -0.1398 4.1456 12 6 4.5850 -1.5585 4.6233 13 1 4.1675 -0.7096 5.1647 14 6 3.6617 -1.9917 3.4480 15 6 4.8030 -2.7717 5.5270 16 1 3.8600 -3.0874 5.9731 17 6 5.8185 -2.3851 6.6087 18 6 7.1508 -2.0060 5.9493 19 6 7.0277 -2.1140 4.4278 20 1 7.9700 -1.8377 3.9545 21 6 6.6672 -3.5599 4.0550 22 7 5.3862 -3.8644 4.7229 23 6 4.7737 -5.0828 4.5994 24 1 3.8364 -5.2695 5.1025 25 6 5.3573 -6.0781 3.8276 26 7 6.4993 -5.8505 3.2141 27 14 4.5177 -7.7376 3.6529 28 1 5.3350 -8.6161 2.7780 29 1 4.3775 -8.3648 4.9917 30 1 3.1734 -7.5513 3.0502 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6764 -1.7490 1.2493 35 1 1.6765 -0.2074 2.1392 36 1 6.1946 -0.6363 1.8534 37 1 6.0408 -2.3961 2.1412 38 1 2.6395 -1.6608 3.6319 39 1 3.6918 -3.0727 3.3122 40 1 5.4380 -1.5365 7.1771 41 1 5.9741 -3.2302 7.2792 42 1 7.9357 -2.6775 6.2974 43 1 7.4072 -0.9817 6.2197 44 1 7.4425 -4.2402 4.4077 45 1 6.5548 -3.6494 2.9745 46 1 6.9070 -6.5458 2.6745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087387802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:32 Heat of formation + Delta-G solvation = -118.302167 kcal Electronic energy + Delta-G solvation = -30442.570933 eV Core-core repulsion = 26195.784237 eV Total energy + Delta-G solvation = -4246.786695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.87356 -47.89594 -41.98136 -40.14176 -36.97932 -35.17498 -34.25569 -33.16938 -31.73075 -31.53904 -29.58065 -28.22082 -27.10647 -25.41042 -23.69174 -22.93448 -22.54326 -21.86233 -20.48152 -19.20469 -18.61484 -18.33574 -17.72466 -17.34581 -17.11732 -17.06017 -16.68077 -16.08402 -15.98472 -15.77812 -15.71357 -14.81586 -14.49481 -14.43162 -14.25995 -14.02400 -13.88660 -13.78593 -13.45369 -13.37528 -13.22676 -13.11118 -13.07973 -13.05478 -12.79420 -12.60693 -12.52184 -12.35155 -12.20577 -12.06439 -11.98477 -11.78377 -11.65328 -11.18474 -10.98433 -10.74239 -10.64259 -10.43794 -9.66143 -8.74203 -7.67792 -5.04509 1.49240 1.49905 1.52560 1.56006 1.89414 2.56071 2.80997 3.13047 3.29484 3.44709 3.47864 3.61366 3.70246 3.75969 3.90811 4.01041 4.28544 4.32840 4.34499 4.37691 4.39250 4.44636 4.56066 4.60875 4.62677 4.66809 4.70660 4.84549 4.89875 4.98870 4.99403 5.02686 5.05538 5.15572 5.27065 5.32856 5.34998 5.44413 5.58679 5.62934 5.73063 5.87317 6.01290 6.36367 6.59009 7.04449 7.25476 7.98135 8.48600 9.34455 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.004460 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.913132 B = 6276.936381 C = 7513.134824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.288 3.712 3 F -0.213 7.213 4 F -0.220 7.220 5 C -0.177 4.177 6 C 0.518 3.482 7 O -0.588 6.588 8 N -0.614 5.614 9 C 0.104 3.896 10 C -0.071 4.071 11 H 0.093 0.907 12 C -0.100 4.100 13 H 0.116 0.884 14 C 0.104 3.896 15 C 0.170 3.830 16 H 0.081 0.919 17 C -0.123 4.123 18 C -0.096 4.096 19 C -0.107 4.107 20 H 0.066 0.934 21 C 0.211 3.789 22 N -0.606 5.606 23 C -0.226 4.226 24 H 0.086 0.914 25 C -0.066 4.066 26 N -0.951 5.951 27 Si 0.960 3.040 28 H -0.308 1.308 29 H -0.280 1.280 30 H -0.279 1.279 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.003 0.997 45 H 0.020 0.980 46 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 13.057 4.222 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.252 3.748 3 F -0.195 7.195 4 F -0.201 7.201 5 C -0.216 4.216 6 C 0.308 3.692 7 O -0.469 6.469 8 N -0.346 5.346 9 C -0.019 4.019 10 C -0.091 4.091 11 H 0.111 0.889 12 C -0.121 4.121 13 H 0.134 0.866 14 C -0.018 4.018 15 C 0.063 3.937 16 H 0.099 0.901 17 C -0.163 4.163 18 C -0.134 4.134 19 C -0.127 4.127 20 H 0.085 0.915 21 C 0.087 3.913 22 N -0.330 5.330 23 C -0.356 4.356 24 H 0.104 0.896 25 C -0.259 4.259 26 N -0.602 5.602 27 Si 0.790 3.210 28 H -0.236 1.236 29 H -0.206 1.206 30 H -0.205 1.205 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.022 0.978 45 H 0.038 0.962 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.670 13.230 3.538 17.993 hybrid contribution 0.717 -1.602 -0.860 1.954 sum -10.953 11.628 2.678 16.197 Atomic orbital electron populations 1.22808 0.87011 1.07256 1.06947 1.21392 0.95773 0.74891 0.82732 1.92984 1.91202 1.38458 1.96822 1.92990 1.91253 1.81258 1.54588 1.22938 0.91162 1.06793 1.00717 1.20633 0.90833 0.77373 0.80335 1.90729 1.71407 1.47883 1.36842 1.49021 1.08057 1.54594 1.22892 1.22513 0.81040 1.00754 0.97562 1.21869 0.95842 0.99324 0.92028 0.88922 1.22845 0.94089 0.99162 0.95978 0.86630 1.22961 0.98439 0.97582 0.82778 1.20751 0.95676 0.86805 0.90429 0.90138 1.22055 0.95756 1.00681 0.97760 1.21379 0.97519 1.01056 0.93403 1.21681 0.97649 0.96247 0.97115 0.91544 1.20793 0.86502 0.89529 0.94487 1.44772 1.22268 1.09970 1.56016 1.19580 1.03311 0.89479 1.23186 0.89619 1.25439 0.98125 1.01234 1.01065 1.70264 1.19778 1.32759 1.37374 0.85421 0.77497 0.80913 0.77120 1.23569 1.20648 1.20490 0.86427 0.89602 0.87286 0.83919 0.82180 0.92179 0.92563 0.87639 0.91349 0.89423 0.93923 0.94052 0.90361 0.97830 0.96241 0.95277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.38 71.98 0.68 -1.57 16 2 C 0.29 6.85 1.85 30.59 0.06 6.91 16 3 F -0.21 -6.30 16.14 44.97 0.73 -5.57 16 4 F -0.22 -7.06 16.14 44.97 0.73 -6.33 16 5 C -0.18 -3.78 4.28 29.85 0.13 -3.65 16 6 C 0.52 17.43 7.68 87.66 0.67 18.11 16 7 O -0.59 -25.32 15.10 -3.04 -0.05 -25.37 16 8 N -0.61 -20.30 3.32 -805.49 -2.67 -22.97 16 9 C 0.10 3.79 6.35 86.53 0.55 4.34 16 10 C -0.07 -2.14 3.09 -9.94 -0.03 -2.18 16 11 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 12 C -0.10 -2.66 3.26 -9.55 -0.03 -2.70 16 13 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 14 C 0.10 2.97 6.28 86.96 0.55 3.52 16 15 C 0.17 5.41 2.98 44.82 0.13 5.54 16 16 H 0.08 2.40 7.99 -2.39 -0.02 2.38 16 17 C -0.12 -3.48 5.84 30.84 0.18 -3.30 16 18 C -0.10 -2.82 5.68 30.74 0.17 -2.64 16 19 C -0.11 -3.69 2.87 -10.58 -0.03 -3.72 16 20 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 21 C 0.21 9.70 4.02 86.36 0.35 10.05 16 22 N -0.61 -26.37 1.97 -670.89 -1.32 -27.69 16 23 C -0.23 -11.15 9.23 84.03 0.78 -10.38 16 24 H 0.09 3.96 7.79 -2.91 -0.02 3.93 16 25 C -0.07 -3.55 5.47 84.86 0.46 -3.09 16 26 N -0.95 -55.37 9.77 21.65 0.21 -55.16 16 27 Si 0.96 44.18 29.55 68.60 2.03 46.21 16 28 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 30 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 31 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.16 2.08 7.95 -2.39 -0.02 2.06 16 36 H 0.06 2.24 7.88 -2.38 -0.02 2.22 16 37 H 0.06 2.50 5.29 -2.38 -0.01 2.49 16 38 H 0.11 2.05 7.31 -2.38 -0.02 2.03 16 39 H 0.07 2.55 6.29 -2.39 -0.02 2.54 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.00 0.19 7.23 -2.39 -0.02 0.17 16 45 H 0.02 1.05 4.86 -2.38 -0.01 1.04 16 46 H 0.24 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -74.11 352.05 5.25 -68.86 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.98 Total: 12.77 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 4.61 Total: 15.25 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.78 Total: -105.82 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 9 Polarization: -13.36 SS G_CDS: 1.45 Total: -11.90 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -74.11 5.25 -68.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.440 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds