Wall clock time and date at job start Tue Mar 31 2020 15:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39900 * 109.46924 * 2 1 4 4 F 1.39900 * 109.46681 * 119.99878 * 2 1 3 5 5 C 1.52998 * 109.47054 * 239.99829 * 2 1 3 6 6 C 1.50695 * 109.47143 * 180.02562 * 5 2 1 7 7 O 1.21286 * 120.00014 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99961 * 180.02562 * 6 5 2 9 9 C 1.49467 * 125.96964 * 180.02562 * 8 6 5 10 10 C 1.48555 * 103.90614 * 175.56275 * 9 8 6 11 11 H 1.09001 * 104.28440 * 287.56607 * 10 9 8 12 12 C 1.56692 * 103.42868 * 33.59919 * 10 9 8 13 13 H 1.09001 * 114.17140 * 70.44659 * 12 10 9 14 14 C 1.49382 * 125.97442 * 359.68855 * 8 6 5 15 15 C 1.53755 * 101.00948 * 192.13767 * 12 10 9 16 16 H 1.08997 * 113.68382 * 154.46296 * 15 12 10 17 17 C 1.53929 * 108.95394 * 26.13720 * 15 12 10 18 18 C 1.52066 * 109.88277 * 284.43862 * 17 15 12 19 19 C 1.49497 * 130.88958 * 164.09466 * 10 9 8 20 20 H 1.09005 * 114.04540 * 21.01115 * 19 10 9 21 21 C 1.56657 * 108.17391 * 253.96310 * 19 10 9 22 22 N 1.48558 * 105.79812 * 291.63856 * 21 19 10 23 23 C 1.36934 * 123.38887 * 214.61205 * 22 21 19 24 24 H 1.07997 * 120.00086 * 160.12894 * 23 22 21 25 25 C 1.38811 * 119.99831 * 340.13013 * 23 22 21 26 26 N 1.31615 * 120.00050 * 349.80745 * 25 23 22 27 27 Si 1.86801 * 119.99644 * 169.80492 * 25 23 22 28 28 H 1.48497 * 109.47173 * 90.00215 * 27 25 23 29 29 H 1.48502 * 109.47172 * 209.99874 * 27 25 23 30 30 H 1.48502 * 109.47417 * 329.99874 * 27 25 23 31 31 H 1.09002 * 109.47674 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46862 * 59.99902 * 1 2 3 33 33 H 1.08997 * 109.47214 * 300.00516 * 1 2 3 34 34 H 1.09003 * 109.47598 * 300.00310 * 5 2 1 35 35 H 1.09006 * 109.47066 * 60.00394 * 5 2 1 36 36 H 1.08999 * 110.54293 * 294.17236 * 9 8 6 37 37 H 1.08997 * 110.54122 * 56.81673 * 9 8 6 38 38 H 1.08999 * 110.75726 * 271.47273 * 14 8 6 39 39 H 1.08998 * 110.75756 * 34.85235 * 14 8 6 40 40 H 1.09005 * 109.56270 * 43.96531 * 17 15 12 41 41 H 1.09006 * 109.55906 * 164.29652 * 17 15 12 42 42 H 1.08999 * 109.34697 * 279.38959 * 18 17 15 43 43 H 1.09000 * 111.22244 * 157.48983 * 18 17 15 44 44 H 1.09001 * 110.05200 * 172.77543 * 21 19 10 45 45 H 1.08998 * 110.75749 * 50.87153 * 21 19 10 46 46 H 0.97004 * 119.99940 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9962 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 3.5469 -0.7218 -1.2489 7 8 4.1534 -0.1966 -0.3393 8 7 4.2208 -1.3051 -2.2599 9 6 5.7074 -1.3838 -2.3940 10 6 5.9128 -2.2131 -3.6093 11 1 5.6416 -3.2213 -3.2960 12 6 4.6998 -1.8267 -4.5229 13 1 4.7534 -0.8182 -4.9330 14 6 3.6126 -1.9921 -3.4388 15 6 4.7830 -2.9210 -5.5998 16 1 3.8293 -3.1332 -6.0830 17 6 5.4706 -4.1610 -5.0006 18 6 6.9677 -3.9189 -4.8892 19 6 7.1223 -2.4125 -4.4651 20 1 8.0620 -2.1679 -3.9697 21 6 6.9066 -1.6312 -5.8056 22 7 5.8194 -2.3477 -6.5209 23 6 5.7686 -2.4730 -7.8835 24 1 5.1651 -3.2479 -8.3325 25 6 6.4930 -1.6039 -8.6878 26 7 7.0649 -0.5420 -8.1610 27 14 6.6561 -1.9417 -10.5178 28 1 5.5385 -1.2865 -11.2436 29 1 7.9492 -1.4004 -11.0077 30 1 6.6103 -3.4066 -10.7568 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8899 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 6.1320 -0.3896 -2.5331 37 1 6.1451 -1.8667 -1.5204 38 1 3.4357 -3.0458 -3.2230 39 1 2.6889 -1.4979 -3.7397 40 1 5.0705 -4.3550 -4.0053 41 1 5.2912 -5.0236 -5.6423 42 1 7.4338 -4.0863 -5.8602 43 1 7.4178 -4.5692 -4.1391 44 1 7.8202 -1.6492 -6.3999 45 1 6.6091 -0.6012 -5.6089 46 1 7.5714 0.0651 -8.7230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087387803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:36 Heat of formation + Delta-G solvation = -58.066271 kcal Electronic energy + Delta-G solvation = -29835.744616 eV Core-core repulsion = 25591.569946 eV Total energy + Delta-G solvation = -4244.174671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.95359 -46.93942 -41.26781 -39.08612 -36.00370 -33.53908 -33.18564 -31.08693 -30.47188 -29.80343 -28.75780 -27.50135 -25.56361 -23.63811 -22.10291 -21.75657 -21.14497 -20.55289 -19.39944 -17.74900 -17.42382 -17.29711 -16.99128 -16.48809 -15.93483 -15.64382 -15.23703 -15.08927 -14.49852 -14.38386 -14.05517 -13.88391 -13.38978 -13.30224 -13.24905 -13.16472 -12.85706 -12.58624 -12.48153 -12.32932 -12.30370 -12.14881 -11.58227 -11.39526 -11.20956 -11.15828 -11.09973 -11.01025 -10.79269 -10.59313 -10.51778 -10.25369 -10.10766 -9.77940 -9.68708 -9.26447 -8.99170 -8.58322 -8.54245 -6.77498 -5.79094 -3.16593 2.61403 2.78318 3.35041 3.42067 3.43076 3.58010 3.83303 4.10656 4.19641 4.39485 4.56191 4.71249 4.84568 4.90060 4.98444 5.03283 5.22642 5.31979 5.35827 5.44051 5.46117 5.48312 5.51195 5.55587 5.70257 5.78836 5.84225 5.89412 5.99380 6.02484 6.10545 6.22821 6.29847 6.37453 6.47688 6.64300 6.71476 6.88230 6.95734 7.08352 7.38748 7.52241 7.59055 7.76046 8.12745 8.24810 9.13186 9.74243 10.40247 11.30942 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.003058 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.707597 B = 9154.214716 C = 9537.409768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.307 3.693 3 F -0.192 7.192 4 F -0.194 7.194 5 C -0.186 4.186 6 C 0.527 3.473 7 O -0.532 6.532 8 N -0.621 5.621 9 C 0.138 3.862 10 C -0.136 4.136 11 H 0.072 0.928 12 C -0.112 4.112 13 H 0.104 0.896 14 C 0.103 3.897 15 C 0.169 3.831 16 H 0.078 0.922 17 C -0.127 4.127 18 C -0.097 4.097 19 C -0.098 4.098 20 H 0.079 0.921 21 C 0.189 3.811 22 N -0.598 5.598 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.002 4.002 26 N -0.912 5.912 27 Si 0.905 3.095 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.028 0.972 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 -3.820 12.603 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 F -0.173 7.173 4 F -0.175 7.175 5 C -0.226 4.226 6 C 0.314 3.686 7 O -0.408 6.408 8 N -0.356 5.356 9 C 0.017 3.983 10 C -0.155 4.155 11 H 0.090 0.910 12 C -0.132 4.132 13 H 0.123 0.877 14 C -0.020 4.020 15 C 0.062 3.938 16 H 0.096 0.904 17 C -0.166 4.166 18 C -0.135 4.135 19 C -0.119 4.119 20 H 0.097 0.903 21 C 0.064 3.936 22 N -0.323 5.323 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.200 4.200 26 N -0.558 5.558 27 Si 0.735 3.265 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.722 -3.388 13.021 17.204 hybrid contribution 0.102 -0.060 -1.004 1.011 sum -10.619 -3.448 12.017 16.403 Atomic orbital electron populations 1.22797 0.91272 1.05502 1.05638 1.20624 0.92959 0.76112 0.83326 1.93048 1.90587 1.36929 1.96768 1.93036 1.90617 1.80787 1.53041 1.22835 0.95267 1.04886 0.99617 1.19763 0.88781 0.78600 0.81469 1.90777 1.69877 1.44882 1.35297 1.49712 1.07765 1.55759 1.22345 1.20790 0.79152 1.00773 0.97621 1.21572 0.98426 1.01172 0.94308 0.90964 1.23790 0.93025 1.02133 0.94252 0.87744 1.22662 0.97230 0.96812 0.85276 1.21587 0.92651 0.90173 0.89391 0.90423 1.22187 0.96560 0.99324 0.98535 1.22103 0.95988 0.94540 1.00821 1.22368 0.95016 0.97403 0.97068 0.90255 1.21754 0.92477 0.91981 0.87356 1.45524 1.20924 1.64468 1.01374 1.19098 1.26611 1.10099 0.80861 0.91304 1.24941 1.01607 0.95655 0.97749 1.69948 1.38297 1.13168 1.34411 0.86254 0.77172 0.77625 0.85448 1.21600 1.21700 1.20680 0.89155 0.89072 0.89714 0.86108 0.85938 0.91500 0.91378 0.90878 0.90743 0.93324 0.92843 0.90796 0.93861 0.90800 0.95357 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 9.38 37.16 0.35 -0.91 16 2 C 0.31 3.41 1.85 -26.73 -0.05 3.36 16 3 F -0.19 -2.75 16.15 2.25 0.04 -2.72 16 4 F -0.19 -2.68 16.14 2.25 0.04 -2.64 16 5 C -0.19 -1.86 4.32 -27.89 -0.12 -1.98 16 6 C 0.53 7.81 7.64 -10.99 -0.08 7.73 16 7 O -0.53 -10.09 15.19 5.55 0.08 -10.00 16 8 N -0.62 -8.82 3.42 -170.52 -0.58 -9.40 16 9 C 0.14 2.09 6.83 -4.56 -0.03 2.06 16 10 C -0.14 -2.09 2.34 -92.53 -0.22 -2.30 16 11 H 0.07 1.06 3.84 -51.93 -0.20 0.86 16 12 C -0.11 -1.78 2.91 -87.49 -0.25 -2.04 16 13 H 0.10 2.01 6.99 -51.93 -0.36 1.65 16 14 C 0.10 1.26 6.17 -1.69 -0.01 1.25 16 15 C 0.17 2.98 4.25 -65.08 -0.28 2.70 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.13 -1.99 5.44 -26.72 -0.15 -2.13 16 18 C -0.10 -1.61 5.61 -24.89 -0.14 -1.75 16 19 C -0.10 -1.69 4.52 -88.06 -0.40 -2.09 16 20 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 21 C 0.19 4.16 4.07 -0.93 0.00 4.15 16 22 N -0.60 -13.47 2.21 -158.03 -0.35 -13.82 16 23 C -0.24 -6.08 10.06 -15.06 -0.15 -6.23 16 24 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 25 C 0.00 -0.05 5.26 -17.43 -0.09 -0.14 16 26 N -0.91 -25.44 10.83 55.49 0.60 -24.84 16 27 Si 0.90 21.09 29.57 -169.99 -5.03 16.07 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 0.96 7.89 -51.93 -0.41 0.55 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 39 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 40 H 0.05 0.66 5.62 -51.93 -0.29 0.37 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.43 7.66 -51.93 -0.40 1.03 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.86 6.79 -51.93 -0.35 1.51 16 45 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -31.66 353.94 -8.43 -40.08 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.94 Total: 0.27 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.62 Total: 1.67 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.33 Total: -48.06 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.07 Total: -5.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.66 -8.43 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.982 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds