Wall clock time and date at job start Tue Mar 31 2020 15:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.47410 * 2 1 4 4 F 1.39898 * 109.47192 * 120.00545 * 2 1 3 5 5 C 1.53002 * 109.46732 * 240.00158 * 2 1 3 6 6 C 1.50698 * 109.47027 * 180.02562 * 5 2 1 7 7 O 1.21280 * 120.00251 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99733 * 180.02562 * 6 5 2 9 9 C 1.49019 * 125.86748 * 179.71371 * 8 6 5 10 10 C 1.52077 * 105.23471 * 187.04717 * 9 8 6 11 11 H 1.08998 * 110.62335 * 84.36107 * 10 9 8 12 12 C 1.56292 * 99.43051 * 327.39302 * 10 9 8 13 13 H 1.09001 * 104.19371 * 297.35648 * 12 10 9 14 14 C 1.49313 * 101.42628 * 47.39779 * 12 10 9 15 15 C 1.49078 * 106.89190 * 185.89129 * 12 10 9 16 16 H 1.09003 * 114.09676 * 210.66333 * 15 12 10 17 17 C 1.57840 * 101.81232 * 86.64046 * 15 12 10 18 18 C 1.54070 * 105.58015 * 324.49380 * 17 15 12 19 19 C 1.53069 * 119.79051 * 215.78771 * 10 9 8 20 20 H 1.09009 * 113.68811 * 317.10249 * 19 10 9 21 21 C 1.56706 * 102.05525 * 193.96516 * 19 10 9 22 22 N 1.48574 * 105.10868 * 321.82875 * 21 19 10 23 23 C 1.36936 * 122.69681 * 145.64418 * 22 21 19 24 24 H 1.08004 * 119.99302 * 200.54872 * 23 22 21 25 25 C 1.38809 * 120.00185 * 20.55070 * 23 22 21 26 26 N 1.31620 * 120.00038 * 10.46025 * 25 23 22 27 27 Si 1.86800 * 119.99950 * 190.46128 * 25 23 22 28 28 H 1.48500 * 109.46947 * 89.99630 * 27 25 23 29 29 H 1.48499 * 109.46916 * 209.99938 * 27 25 23 30 30 H 1.48503 * 109.47132 * 329.99827 * 27 25 23 31 31 H 1.08993 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47402 * 59.99279 * 1 2 3 33 33 H 1.09005 * 109.46480 * 299.99958 * 1 2 3 34 34 H 1.09003 * 109.47243 * 299.99953 * 5 2 1 35 35 H 1.08996 * 109.47435 * 59.99991 * 5 2 1 36 36 H 1.09000 * 110.29571 * 306.10596 * 9 8 6 37 37 H 1.08999 * 110.29649 * 68.24067 * 9 8 6 38 38 H 1.08995 * 110.90758 * 198.18804 * 14 12 10 39 39 H 1.09007 * 110.90242 * 74.59091 * 14 12 10 40 40 H 1.08998 * 109.54569 * 205.81073 * 17 15 12 41 41 H 1.09003 * 110.95931 * 83.92271 * 17 15 12 42 42 H 1.09001 * 109.40781 * 203.36130 * 18 17 15 43 43 H 1.08996 * 109.35271 * 83.54371 * 18 17 15 44 44 H 1.08999 * 110.30278 * 80.72579 * 21 19 10 45 45 H 1.09002 * 110.30451 * 202.93355 * 21 19 10 46 46 H 0.96995 * 119.99954 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6596 1.1422 5 6 2.0399 -0.7212 -1.2493 6 6 3.5469 -0.7218 -1.2491 7 8 4.1534 -0.1967 -0.3395 8 7 4.2207 -1.3051 -2.2602 9 6 5.7030 -1.3766 -2.3950 10 6 5.9509 -1.9672 -3.7743 11 1 5.9233 -1.1881 -4.5361 12 6 4.7040 -2.9036 -3.8797 13 1 4.8383 -3.6198 -3.0691 14 6 3.6082 -1.9873 -3.4449 15 6 4.8576 -3.6896 -5.1371 16 1 3.9139 -3.9626 -5.6094 17 6 5.7265 -4.9135 -4.6490 18 6 6.6858 -4.3427 -3.5871 19 6 7.1312 -2.9166 -3.9942 20 1 8.0512 -2.5915 -3.5083 21 6 7.2223 -2.9689 -5.5577 22 7 5.8130 -2.9645 -6.0281 23 6 5.4213 -2.3461 -7.1854 24 1 4.3856 -2.0756 -7.3292 25 6 6.3553 -2.0668 -8.1735 26 7 7.5676 -2.5734 -8.0953 27 14 5.8917 -0.9721 -9.6144 28 1 6.1924 0.4426 -9.2780 29 1 6.6729 -1.3730 -10.8120 30 1 4.4413 -1.1158 -9.8987 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3632 0.5139 0.8901 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 6.1376 -0.3794 -2.3252 37 1 6.1216 -2.0268 -1.6269 38 1 2.7221 -2.5512 -3.1538 39 1 3.3696 -1.2674 -4.2278 40 1 6.2915 -5.3177 -5.4890 41 1 5.0973 -5.6884 -4.2111 42 1 7.5615 -4.9867 -3.5065 43 1 6.1761 -4.3021 -2.6245 44 1 7.7499 -2.0931 -5.9354 45 1 7.7248 -3.8820 -5.8770 46 1 8.2204 -2.3780 -8.7855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087387804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:39 Heat of formation + Delta-G solvation = -67.131151 kcal Electronic energy + Delta-G solvation = -29960.217028 eV Core-core repulsion = 25715.649275 eV Total energy + Delta-G solvation = -4244.567753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.94166 -46.92806 -41.10718 -39.04007 -35.98622 -33.50459 -33.19429 -31.17472 -30.44568 -29.92624 -28.67432 -27.31086 -25.40643 -23.93088 -22.14799 -21.84829 -20.80023 -20.51711 -19.36669 -17.73856 -17.45106 -17.24363 -16.94813 -16.65036 -15.95965 -15.60920 -15.28713 -14.90164 -14.49977 -14.27503 -14.19451 -13.82749 -13.31140 -13.26063 -13.17549 -13.14633 -12.83410 -12.57991 -12.48237 -12.34540 -12.26543 -12.16438 -11.75217 -11.34383 -11.22652 -11.14488 -11.06124 -10.94984 -10.75401 -10.62825 -10.45398 -10.20207 -10.13425 -9.81746 -9.66706 -9.24395 -9.04057 -8.56828 -8.53388 -6.81957 -5.80872 -3.19070 2.64768 2.84416 3.34842 3.41085 3.42699 3.59950 3.84941 4.12375 4.21194 4.41329 4.60406 4.77877 4.86246 4.91518 5.00721 5.21994 5.24989 5.30969 5.40321 5.46567 5.47759 5.49225 5.50751 5.62405 5.68746 5.72705 5.83186 5.88177 6.10484 6.14359 6.16821 6.24805 6.30600 6.42129 6.48985 6.55288 6.64156 6.88222 7.00234 7.04837 7.36639 7.57489 7.57949 7.74433 8.16774 8.25048 9.12535 9.74111 10.37356 11.29296 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.003457 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.219955 B = 8097.720995 C = 8895.756290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.306 3.694 3 F -0.193 7.193 4 F -0.194 7.194 5 C -0.185 4.185 6 C 0.526 3.474 7 O -0.534 6.534 8 N -0.620 5.620 9 C 0.118 3.882 10 C -0.085 4.085 11 H 0.099 0.901 12 C -0.147 4.147 13 H 0.069 0.931 14 C 0.124 3.876 15 C 0.188 3.812 16 H 0.081 0.919 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.112 4.112 20 H 0.078 0.922 21 C 0.191 3.809 22 N -0.594 5.594 23 C -0.242 4.242 24 H 0.070 0.930 25 C 0.000 4.000 26 N -0.912 5.912 27 Si 0.904 3.096 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 -0.626 12.127 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 F -0.174 7.174 4 F -0.175 7.175 5 C -0.226 4.226 6 C 0.313 3.687 7 O -0.411 6.411 8 N -0.355 5.355 9 C -0.003 4.003 10 C -0.105 4.105 11 H 0.117 0.883 12 C -0.168 4.168 13 H 0.088 0.912 14 C 0.002 3.998 15 C 0.080 3.920 16 H 0.099 0.901 17 C -0.172 4.172 18 C -0.148 4.148 19 C -0.132 4.132 20 H 0.097 0.903 21 C 0.067 3.933 22 N -0.317 5.317 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.198 4.198 26 N -0.558 5.558 27 Si 0.734 3.266 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.051 0.949 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.183 -0.258 12.540 16.804 hybrid contribution -0.074 0.568 -0.763 0.954 sum -11.257 0.310 11.777 16.294 Atomic orbital electron populations 1.22795 0.91294 1.05510 1.05596 1.20629 0.92938 0.76088 0.83373 1.93042 1.90593 1.36978 1.96776 1.93036 1.90613 1.80780 1.53044 1.22829 0.95331 1.04848 0.99558 1.19756 0.88787 0.78581 0.81588 1.90770 1.69904 1.45039 1.35391 1.49750 1.07872 1.55783 1.22060 1.21808 0.79044 1.00951 0.98514 1.22246 0.96074 0.97942 0.94195 0.88292 1.22270 0.94811 0.97825 1.01906 0.91244 1.21331 0.96080 0.95399 0.86972 1.20904 0.93432 0.89354 0.88344 0.90135 1.23300 0.98041 0.97405 0.98458 1.22140 0.98455 0.96432 0.97807 1.22828 0.96053 0.92884 1.01461 0.90332 1.21814 0.85374 1.00860 0.85272 1.45364 1.02877 1.60736 1.22750 1.19141 0.94482 1.30796 0.92721 0.91267 1.24934 0.96763 1.00528 0.97542 1.69952 1.04529 1.46199 1.35074 0.86260 0.77610 0.80488 0.82197 1.21628 1.21818 1.20621 0.89146 0.89090 0.89742 0.86118 0.85977 0.91503 0.91960 0.91031 0.90692 0.90811 0.93114 0.92968 0.93029 0.91026 0.94935 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 9.38 37.16 0.35 -0.93 16 2 C 0.31 3.46 1.85 -26.73 -0.05 3.41 16 3 F -0.19 -2.77 16.15 2.25 0.04 -2.74 16 4 F -0.19 -2.73 16.14 2.25 0.04 -2.69 16 5 C -0.19 -1.90 4.37 -27.88 -0.12 -2.03 16 6 C 0.53 7.99 7.64 -10.99 -0.08 7.91 16 7 O -0.53 -10.30 15.19 5.56 0.08 -10.21 16 8 N -0.62 -9.15 3.42 -171.54 -0.59 -9.74 16 9 C 0.12 1.87 6.57 -3.12 -0.02 1.85 16 10 C -0.09 -1.43 2.40 -89.29 -0.21 -1.64 16 11 H 0.10 1.98 7.30 -51.93 -0.38 1.60 16 12 C -0.15 -2.24 2.37 -92.59 -0.22 -2.46 16 13 H 0.07 1.03 4.67 -51.93 -0.24 0.79 16 14 C 0.12 1.62 6.59 -4.02 -0.03 1.59 16 15 C 0.19 3.31 4.64 -65.59 -0.30 3.01 16 16 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 17 C -0.13 -2.18 5.62 -23.52 -0.13 -2.31 16 18 C -0.11 -1.71 5.30 -25.20 -0.13 -1.84 16 19 C -0.11 -1.92 4.26 -87.61 -0.37 -2.30 16 20 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 21 C 0.19 4.16 3.99 -0.90 0.00 4.16 16 22 N -0.59 -13.15 2.05 -158.64 -0.33 -13.48 16 23 C -0.24 -6.09 10.00 -15.06 -0.15 -6.24 16 24 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 25 C 0.00 0.00 5.23 -17.43 -0.09 -0.09 16 26 N -0.91 -25.16 10.83 55.49 0.60 -24.56 16 27 Si 0.90 20.95 29.57 -169.99 -5.03 15.92 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 30 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.12 0.91 7.93 -51.93 -0.41 0.50 16 35 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 38 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.39 7.18 -51.93 -0.37 1.02 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.74 6.43 -51.93 -0.33 0.41 16 44 H 0.07 1.78 6.82 -51.93 -0.35 1.43 16 45 H 0.03 0.78 7.15 -51.93 -0.37 0.40 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -31.15 355.73 -8.46 -39.60 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.06 Total: 0.44 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.58 Total: 2.09 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.31 Total: -47.77 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.15 -8.46 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.530 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds