Wall clock time and date at job start Tue Mar 31 2020 15:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.47410 * 2 1 4 4 F 1.39898 * 109.47192 * 120.00545 * 2 1 3 5 5 C 1.53002 * 109.46732 * 240.00158 * 2 1 3 6 6 C 1.50698 * 109.47027 * 180.02562 * 5 2 1 7 7 O 1.21280 * 120.00251 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99733 * 180.02562 * 6 5 2 9 9 C 1.49019 * 125.86748 * 179.71371 * 8 6 5 10 10 C 1.52077 * 105.23471 * 187.04717 * 9 8 6 11 11 H 1.08998 * 110.62335 * 84.36107 * 10 9 8 12 12 C 1.56292 * 99.43051 * 327.39302 * 10 9 8 13 13 H 1.09001 * 104.19371 * 297.35648 * 12 10 9 14 14 C 1.49313 * 101.42628 * 47.39779 * 12 10 9 15 15 C 1.49078 * 106.89190 * 185.89129 * 12 10 9 16 16 H 1.09003 * 114.09676 * 210.66333 * 15 12 10 17 17 C 1.57840 * 101.81232 * 86.64046 * 15 12 10 18 18 C 1.54070 * 105.58015 * 324.49380 * 17 15 12 19 19 C 1.53069 * 119.79051 * 215.78771 * 10 9 8 20 20 H 1.09009 * 113.68811 * 317.10249 * 19 10 9 21 21 C 1.56706 * 102.05525 * 193.96516 * 19 10 9 22 22 N 1.48574 * 105.10868 * 321.82875 * 21 19 10 23 23 C 1.36936 * 122.69681 * 145.64418 * 22 21 19 24 24 H 1.08004 * 119.99302 * 200.54872 * 23 22 21 25 25 C 1.38809 * 120.00185 * 20.55070 * 23 22 21 26 26 N 1.31620 * 120.00038 * 10.46025 * 25 23 22 27 27 Si 1.86800 * 119.99950 * 190.46128 * 25 23 22 28 28 H 1.48500 * 109.46947 * 89.99630 * 27 25 23 29 29 H 1.48499 * 109.46916 * 209.99938 * 27 25 23 30 30 H 1.48503 * 109.47132 * 329.99827 * 27 25 23 31 31 H 1.08993 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47402 * 59.99279 * 1 2 3 33 33 H 1.09005 * 109.46480 * 299.99958 * 1 2 3 34 34 H 1.09003 * 109.47243 * 299.99953 * 5 2 1 35 35 H 1.08996 * 109.47435 * 59.99991 * 5 2 1 36 36 H 1.09000 * 110.29571 * 306.10596 * 9 8 6 37 37 H 1.08999 * 110.29649 * 68.24067 * 9 8 6 38 38 H 1.08995 * 110.90758 * 198.18804 * 14 12 10 39 39 H 1.09007 * 110.90242 * 74.59091 * 14 12 10 40 40 H 1.08998 * 109.54569 * 205.81073 * 17 15 12 41 41 H 1.09003 * 110.95931 * 83.92271 * 17 15 12 42 42 H 1.09001 * 109.40781 * 203.36130 * 18 17 15 43 43 H 1.08996 * 109.35271 * 83.54371 * 18 17 15 44 44 H 1.08999 * 110.30278 * 80.72579 * 21 19 10 45 45 H 1.09002 * 110.30451 * 202.93355 * 21 19 10 46 46 H 0.96995 * 119.99954 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6596 1.1422 5 6 2.0399 -0.7212 -1.2493 6 6 3.5469 -0.7218 -1.2491 7 8 4.1534 -0.1967 -0.3395 8 7 4.2207 -1.3051 -2.2602 9 6 5.7030 -1.3766 -2.3950 10 6 5.9509 -1.9672 -3.7743 11 1 5.9233 -1.1881 -4.5361 12 6 4.7040 -2.9036 -3.8797 13 1 4.8383 -3.6198 -3.0691 14 6 3.6082 -1.9873 -3.4449 15 6 4.8576 -3.6896 -5.1371 16 1 3.9139 -3.9626 -5.6094 17 6 5.7265 -4.9135 -4.6490 18 6 6.6858 -4.3427 -3.5871 19 6 7.1312 -2.9166 -3.9942 20 1 8.0512 -2.5915 -3.5083 21 6 7.2223 -2.9689 -5.5577 22 7 5.8130 -2.9645 -6.0281 23 6 5.4213 -2.3461 -7.1854 24 1 4.3856 -2.0756 -7.3292 25 6 6.3553 -2.0668 -8.1735 26 7 7.5676 -2.5734 -8.0953 27 14 5.8917 -0.9721 -9.6144 28 1 6.1924 0.4426 -9.2780 29 1 6.6729 -1.3730 -10.8120 30 1 4.4413 -1.1158 -9.8987 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3632 0.5139 0.8901 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 6.1376 -0.3794 -2.3252 37 1 6.1216 -2.0268 -1.6269 38 1 2.7221 -2.5512 -3.1538 39 1 3.3696 -1.2674 -4.2278 40 1 6.2915 -5.3177 -5.4890 41 1 5.0973 -5.6884 -4.2111 42 1 7.5615 -4.9867 -3.5065 43 1 6.1761 -4.3021 -2.6245 44 1 7.7499 -2.0931 -5.9354 45 1 7.7248 -3.8820 -5.8770 46 1 8.2204 -2.3780 -8.7855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087387804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:39 Heat of formation + Delta-G solvation = -84.899122 kcal Electronic energy + Delta-G solvation = -29960.987505 eV Core-core repulsion = 25715.649275 eV Total energy + Delta-G solvation = -4245.338230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.85117 -47.87486 -42.45617 -40.27908 -37.33705 -35.03361 -34.23014 -32.59661 -31.69858 -31.59272 -29.57774 -28.50892 -27.13079 -25.23079 -23.56186 -22.98543 -22.14981 -21.86872 -20.47806 -19.09299 -18.61599 -18.34000 -18.28505 -17.82322 -17.08520 -16.78581 -16.61663 -16.32187 -16.01494 -15.81743 -15.40184 -14.84217 -14.53435 -14.44684 -14.23527 -14.16737 -13.95077 -13.86036 -13.49984 -13.39770 -13.14750 -13.08349 -13.05416 -12.94808 -12.83791 -12.57340 -12.42195 -12.27432 -12.23735 -12.04927 -11.95642 -11.90382 -11.77704 -11.21650 -10.99288 -10.64451 -10.55983 -10.43570 -9.73480 -8.67821 -7.79017 -5.16625 1.47873 1.49798 1.53837 1.56777 1.76362 2.53810 2.83274 3.10110 3.24525 3.38918 3.42210 3.49014 3.50898 3.84528 3.86513 4.01580 4.09535 4.27033 4.29824 4.33712 4.37934 4.41497 4.52757 4.54720 4.67197 4.71763 4.72807 4.84593 4.85993 4.87507 4.96554 5.02458 5.07779 5.10360 5.11979 5.22826 5.32207 5.46112 5.50140 5.63024 5.66593 5.72695 5.85766 6.34924 6.44874 7.03439 7.17827 7.86955 8.48177 9.29592 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.003457 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.219955 B = 8097.720995 C = 8895.756290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.287 3.713 3 F -0.219 7.219 4 F -0.216 7.216 5 C -0.177 4.177 6 C 0.517 3.483 7 O -0.584 6.584 8 N -0.620 5.620 9 C 0.123 3.877 10 C -0.080 4.080 11 H 0.060 0.940 12 C -0.136 4.136 13 H 0.087 0.913 14 C 0.128 3.872 15 C 0.181 3.819 16 H 0.092 0.908 17 C -0.127 4.127 18 C -0.104 4.104 19 C -0.103 4.103 20 H 0.087 0.913 21 C 0.201 3.799 22 N -0.609 5.609 23 C -0.236 4.236 24 H 0.077 0.923 25 C -0.059 4.059 26 N -0.945 5.945 27 Si 0.960 3.040 28 H -0.295 1.295 29 H -0.302 1.302 30 H -0.265 1.265 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.028 0.972 45 H 0.003 0.997 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.169 -1.806 13.441 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.251 3.749 3 F -0.200 7.200 4 F -0.197 7.197 5 C -0.217 4.217 6 C 0.307 3.693 7 O -0.465 6.465 8 N -0.353 5.353 9 C 0.001 3.999 10 C -0.100 4.100 11 H 0.078 0.922 12 C -0.157 4.157 13 H 0.105 0.895 14 C 0.007 3.993 15 C 0.075 3.925 16 H 0.110 0.890 17 C -0.165 4.165 18 C -0.141 4.141 19 C -0.123 4.123 20 H 0.105 0.895 21 C 0.076 3.924 22 N -0.333 5.333 23 C -0.366 4.366 24 H 0.095 0.905 25 C -0.253 4.253 26 N -0.594 5.594 27 Si 0.790 3.210 28 H -0.223 1.223 29 H -0.229 1.229 30 H -0.190 1.190 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.046 0.954 45 H 0.021 0.979 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.775 -1.457 13.862 20.312 hybrid contribution 1.042 0.938 -1.151 1.814 sum -13.732 -0.518 12.711 18.719 Atomic orbital electron populations 1.22813 0.87244 1.07496 1.06602 1.21414 0.95691 0.74830 0.83004 1.92990 1.91209 1.38939 1.96852 1.92989 1.91186 1.81095 1.54414 1.22972 0.91105 1.07444 1.00158 1.20683 0.90881 0.77255 0.80512 1.90751 1.71408 1.47041 1.37282 1.49805 1.07192 1.55813 1.22524 1.21607 0.80542 1.00067 0.97662 1.21974 0.97011 0.97252 0.93760 0.92199 1.22077 0.94827 0.97926 1.00827 0.89475 1.21453 0.96647 0.94965 0.86212 1.21170 0.93133 0.89899 0.88310 0.88978 1.23211 0.98024 0.97581 0.97692 1.22085 0.98955 0.94625 0.98434 1.22739 0.97037 0.94914 0.97566 0.89488 1.21461 0.85046 0.97344 0.88580 1.45573 1.03719 1.61365 1.22621 1.19522 0.94564 1.29368 0.93167 0.90522 1.25597 0.97005 1.02536 1.00165 1.70136 1.05429 1.48210 1.35609 0.85356 0.77838 0.78486 0.79341 1.22274 1.22942 1.18972 0.86629 0.87051 0.89867 0.82277 0.83140 0.93194 0.91281 0.86318 0.91254 0.94141 0.89459 0.92156 0.90533 0.95387 0.97899 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.38 71.98 0.68 -1.02 16 2 C 0.29 5.72 1.85 30.60 0.06 5.77 16 3 F -0.22 -6.08 16.15 44.97 0.73 -5.35 16 4 F -0.22 -5.73 16.14 44.97 0.73 -5.01 16 5 C -0.18 -2.89 4.37 29.85 0.13 -2.76 16 6 C 0.52 14.45 7.64 87.66 0.67 15.11 16 7 O -0.58 -22.19 15.19 -3.03 -0.05 -22.24 16 8 N -0.62 -16.56 3.42 -815.01 -2.79 -19.35 16 9 C 0.12 3.75 6.57 85.59 0.56 4.32 16 10 C -0.08 -2.64 2.40 -9.93 -0.02 -2.66 16 11 H 0.06 2.46 7.30 -2.39 -0.02 2.44 16 12 C -0.14 -3.70 2.37 -12.07 -0.03 -3.73 16 13 H 0.09 2.14 4.67 -2.39 -0.01 2.13 16 14 C 0.13 2.80 6.59 84.56 0.56 3.36 16 15 C 0.18 5.98 4.64 44.90 0.21 6.19 16 16 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 17 C -0.13 -3.82 5.62 32.67 0.18 -3.64 16 18 C -0.10 -2.94 5.30 31.59 0.17 -2.77 16 19 C -0.10 -3.49 4.26 -8.84 -0.04 -3.53 16 20 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 21 C 0.20 9.12 3.99 87.28 0.35 9.46 16 22 N -0.61 -27.23 2.05 -655.83 -1.35 -28.57 16 23 C -0.24 -11.98 10.00 84.03 0.84 -11.14 16 24 H 0.08 3.70 7.85 -2.91 -0.02 3.68 16 25 C -0.06 -3.19 5.23 84.86 0.44 -2.75 16 26 N -0.95 -54.86 10.83 21.65 0.23 -54.63 16 27 Si 0.96 44.10 29.57 68.60 2.03 46.13 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 29 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 30 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.16 1.37 7.93 -2.39 -0.02 1.35 16 35 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 38 H 0.12 1.58 7.66 -2.39 -0.02 1.57 16 39 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.04 1.50 7.18 -2.39 -0.02 1.49 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.85 6.43 -2.39 -0.02 1.84 16 44 H 0.03 1.49 6.82 -2.39 -0.02 1.47 16 45 H 0.00 0.15 7.15 -2.39 -0.02 0.13 16 46 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -73.98 355.73 5.27 -68.71 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.98 Total: 10.09 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 4.75 Total: 10.22 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -3.90 Total: -102.55 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 1.45 Total: -10.36 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.98 5.27 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087387804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.188 kcal (2) G-P(sol) polarization free energy of solvation -73.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds