Wall clock time and date at job start Tue Mar 31 2020 14:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39905 * 109.46842 * 2 1 4 4 F 1.39895 * 109.47257 * 119.99514 * 2 1 3 5 5 C 1.52995 * 109.47543 * 239.99785 * 2 1 3 6 6 C 1.50707 * 115.55091 * 55.02040 * 5 2 1 7 7 O 1.21281 * 119.99899 * 250.97948 * 6 5 2 8 8 N 1.34770 * 120.00034 * 70.97232 * 6 5 2 9 9 C 1.47387 * 125.74203 * 175.53787 * 8 6 5 10 10 C 1.55411 * 106.73852 * 179.03045 * 9 8 6 11 11 H 1.09002 * 112.75725 * 146.40573 * 10 9 8 12 12 C 1.52901 * 106.57034 * 270.27689 * 10 9 8 13 13 C 1.51577 * 111.66407 * 169.88853 * 12 10 9 14 14 N 1.44339 * 113.01467 * 320.12216 * 13 12 10 15 15 C 1.36933 * 116.42544 * 188.02580 * 14 13 12 16 16 H 1.08003 * 120.00493 * 155.78132 * 15 14 13 17 17 C 1.38812 * 120.00326 * 335.78745 * 15 14 13 18 18 N 1.31619 * 119.99672 * 4.83933 * 17 15 14 19 19 Si 1.86796 * 120.00067 * 184.84793 * 17 15 14 20 20 H 1.48500 * 109.47666 * 59.99890 * 19 17 15 21 21 H 1.48502 * 109.46950 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47170 * 299.99282 * 19 17 15 23 23 C 1.43981 * 127.15152 * 8.00798 * 14 13 12 24 24 C 1.50328 * 116.59532 * 3.60570 * 23 14 13 25 25 H 1.08998 * 110.12323 * 140.46409 * 24 23 14 26 26 C 1.47937 * 125.74374 * 355.22890 * 8 6 5 27 27 C 1.52997 * 117.50097 * 269.34782 * 5 2 1 28 28 C 1.52997 * 117.50022 * 200.68734 * 5 2 1 29 29 H 1.08997 * 109.46830 * 54.72376 * 1 2 3 30 30 H 1.08997 * 109.46893 * 174.71616 * 1 2 3 31 31 H 1.08995 * 109.47689 * 294.72162 * 1 2 3 32 32 H 1.09004 * 110.00274 * 298.35051 * 9 8 6 33 33 H 1.08996 * 110.00380 * 59.66267 * 9 8 6 34 34 H 1.09003 * 109.04633 * 290.45618 * 12 10 9 35 35 H 1.09005 * 109.03903 * 49.40341 * 12 10 9 36 36 H 1.08996 * 108.77399 * 81.03984 * 13 12 10 37 37 H 1.09002 * 108.77146 * 199.21235 * 13 12 10 38 38 H 0.97005 * 119.99849 * 180.02562 * 18 17 15 39 39 H 1.09005 * 108.11368 * 124.66288 * 23 14 13 40 40 H 1.09001 * 108.11665 * 241.32990 * 23 14 13 41 41 H 1.08997 * 110.56566 * 274.18001 * 26 8 6 42 42 H 1.09004 * 110.56178 * 37.03395 * 26 8 6 43 43 H 1.09003 * 117.49870 * 0.02562 * 27 5 2 44 44 H 1.09004 * 117.50210 * 145.01750 * 27 5 2 45 45 H 1.09000 * 117.49785 * 214.97752 * 28 5 2 46 46 H 1.09002 * 117.49783 * 359.97438 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 1.1423 5 6 2.0401 -0.7213 -1.2491 6 6 1.5219 -0.1929 -2.5620 7 8 0.7291 -0.8451 -3.2077 8 7 1.9394 1.0045 -3.0184 9 6 1.5897 1.5990 -4.3209 10 6 2.2854 2.9874 -4.3805 11 1 2.6035 3.2568 -5.3876 12 6 1.2987 3.9952 -3.7900 13 6 1.9471 5.3465 -3.5639 14 7 3.2950 5.2479 -3.0572 15 6 3.8867 6.4196 -2.6672 16 1 4.6894 6.4050 -1.9447 17 6 3.4548 7.6263 -3.2002 18 7 2.4153 7.6548 -4.0071 19 14 4.3490 9.2096 -2.7727 20 1 5.7653 9.1115 -3.2082 21 1 3.6964 10.3494 -3.4658 22 1 4.2965 9.4269 -1.3047 23 6 4.0858 4.0530 -2.9164 24 6 3.4721 2.7765 -3.4203 25 1 4.2283 2.1661 -3.9138 26 6 2.8206 1.9462 -2.2936 27 6 2.2902 -2.2269 -1.1430 28 6 3.4726 -1.2578 -1.2196 29 1 -0.3633 0.5935 -0.8390 30 1 -0.3633 -1.0233 -0.0946 31 1 -0.3634 0.4297 0.9334 32 1 1.9529 0.9649 -5.1297 33 1 0.5091 1.7189 -4.3980 34 1 0.4589 4.1139 -4.4748 35 1 0.9296 3.6152 -2.8374 36 1 1.9664 5.8890 -4.5091 37 1 1.3447 5.9098 -2.8511 38 1 2.1137 8.4981 -4.3799 39 1 5.0215 4.2002 -3.4559 40 1 4.3228 3.9259 -1.8601 41 1 2.2360 2.5859 -1.6324 42 1 3.5799 1.4036 -1.7303 43 1 2.0909 -2.7038 -0.1832 44 1 2.0803 -2.8353 -2.0227 45 1 4.0400 -1.2291 -2.1499 46 1 4.0518 -1.0966 -0.3104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088109159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:50 Heat of formation + Delta-G solvation = -66.636091 kcal Electronic energy + Delta-G solvation = -30479.515518 eV Core-core repulsion = 26234.969232 eV Total energy + Delta-G solvation = -4244.546286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.21882 -47.20760 -40.55028 -38.87296 -36.68581 -35.64532 -32.62168 -31.56762 -31.52138 -30.12160 -28.05871 -25.82885 -25.04063 -23.76826 -22.88981 -22.43827 -21.95265 -21.10907 -18.95868 -18.05886 -17.76837 -17.50531 -17.19277 -16.54931 -16.12404 -15.61827 -15.33540 -14.90631 -14.60833 -14.29338 -13.98260 -13.78171 -13.72671 -13.57076 -13.45726 -13.03847 -12.92754 -12.75694 -12.66846 -12.55028 -12.29291 -12.21638 -11.93569 -11.86601 -11.71669 -11.31975 -10.94902 -10.86287 -10.77024 -10.67923 -10.43884 -10.21020 -10.14811 -9.99706 -9.68836 -9.59603 -9.54831 -8.57642 -8.37709 -6.68254 -5.56248 -3.19097 2.31223 2.77204 3.14676 3.39230 3.44169 3.44531 3.45375 3.85844 3.98214 4.24251 4.27245 4.48166 4.62584 4.66991 4.78795 4.89311 5.13669 5.18629 5.25509 5.29451 5.38557 5.42749 5.43818 5.50276 5.58655 5.63098 5.65563 5.71813 5.77880 5.84462 5.97056 6.09265 6.17780 6.19564 6.42806 6.59746 6.63264 6.75231 6.84726 6.85179 7.47947 7.60721 7.86054 8.03232 8.12897 8.57800 9.36181 10.05464 10.30463 11.28703 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.003624 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.689236 B = 7724.486267 C = 8263.170424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.333 3.667 3 F -0.185 7.185 4 F -0.194 7.194 5 C -0.215 4.215 6 C 0.569 3.431 7 O -0.537 6.537 8 N -0.604 5.604 9 C 0.108 3.892 10 C -0.080 4.080 11 H 0.097 0.903 12 C -0.131 4.131 13 C 0.176 3.824 14 N -0.599 5.599 15 C -0.258 4.258 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.909 5.909 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.181 3.819 24 C -0.100 4.100 25 H 0.073 0.927 26 C 0.106 3.894 27 C -0.124 4.124 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.250 0.750 39 H 0.020 0.980 40 H 0.013 0.987 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -17.926 4.808 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.296 3.704 3 F -0.165 7.165 4 F -0.175 7.175 5 C -0.219 4.219 6 C 0.356 3.644 7 O -0.415 6.415 8 N -0.337 5.337 9 C -0.014 4.014 10 C -0.100 4.100 11 H 0.115 0.885 12 C -0.170 4.170 13 C 0.052 3.948 14 N -0.325 5.325 15 C -0.388 4.388 16 H 0.086 0.914 17 C -0.191 4.191 18 N -0.556 5.556 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.054 3.946 24 C -0.120 4.120 25 H 0.092 0.908 26 C -0.016 4.016 27 C -0.161 4.161 28 C -0.181 4.181 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.038 0.962 40 H 0.030 0.970 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.845 -18.227 4.416 18.845 hybrid contribution 0.537 1.024 0.443 1.238 sum -1.308 -17.203 4.859 17.924 Atomic orbital electron populations 1.22724 0.90753 1.05811 1.05485 1.20059 0.93789 0.75368 0.81195 1.93090 1.90434 1.36511 1.96500 1.92999 1.90642 1.81074 1.52806 1.22320 1.04755 1.00558 0.94275 1.18482 0.80933 0.80174 0.84853 1.90702 1.33940 1.58014 1.58795 1.48661 1.48886 1.16920 1.19198 1.22495 1.00260 0.94520 0.84077 1.22075 0.95330 0.92615 0.99936 0.88474 1.21892 0.97570 0.98258 0.99242 1.20592 0.83084 0.89573 1.01576 1.42730 1.11631 1.02313 1.75838 1.19239 1.16221 0.84628 1.18667 0.91443 1.25173 0.97850 0.98310 0.97793 1.70086 1.25406 1.24442 1.35669 0.86306 0.79447 0.82949 0.77700 1.20976 1.21615 1.21090 1.19227 0.93254 0.84902 0.97222 1.21797 0.97182 0.97405 0.95577 0.90828 1.22889 0.92816 0.90764 0.95125 1.23090 0.99653 0.88313 1.05054 1.23165 0.88892 1.00957 1.05071 0.89315 0.88949 0.89531 0.91830 0.91169 0.92453 0.93751 0.89512 0.95264 0.93872 0.96191 0.96951 0.89459 0.90720 0.86933 0.86874 0.87307 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 9.04 37.16 0.34 -1.65 16 2 C 0.33 3.93 2.09 -26.73 -0.06 3.88 16 3 F -0.18 -2.58 13.02 2.25 0.03 -2.55 16 4 F -0.19 -2.24 15.65 2.25 0.04 -2.20 16 5 C -0.22 -2.50 1.05 -155.66 -0.16 -2.66 16 6 C 0.57 8.19 6.12 -10.98 -0.07 8.13 16 7 O -0.54 -9.10 17.18 5.56 0.10 -9.00 16 8 N -0.60 -8.79 3.34 -169.46 -0.57 -9.36 16 9 C 0.11 1.58 6.25 -2.28 -0.01 1.57 16 10 C -0.08 -1.30 3.60 -88.82 -0.32 -1.62 16 11 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 12 C -0.13 -2.43 4.79 -27.50 -0.13 -2.57 16 13 C 0.18 4.16 4.65 -5.91 -0.03 4.14 16 14 N -0.60 -14.58 3.25 -179.38 -0.58 -15.16 16 15 C -0.26 -6.95 9.42 -15.06 -0.14 -7.09 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 17 C 0.01 0.15 5.40 -17.43 -0.09 0.06 16 18 N -0.91 -25.52 9.50 55.49 0.53 -24.99 16 19 Si 0.91 21.47 29.56 -169.99 -5.02 16.45 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.18 3.62 5.73 -6.71 -0.04 3.59 16 24 C -0.10 -1.61 2.92 -90.66 -0.26 -1.88 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 C 0.11 1.58 3.74 -2.53 -0.01 1.57 16 27 C -0.12 -1.14 9.50 -26.70 -0.25 -1.40 16 28 C -0.14 -1.36 9.03 -26.70 -0.24 -1.60 16 29 H 0.09 1.03 7.64 -51.93 -0.40 0.63 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.82 6.68 -51.93 -0.35 0.48 16 36 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 37 H 0.03 0.78 7.72 -51.93 -0.40 0.38 16 38 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 40 H 0.01 0.26 7.80 -51.93 -0.40 -0.15 16 41 H 0.09 1.48 5.82 -51.93 -0.30 1.17 16 42 H 0.07 1.01 6.64 -51.93 -0.34 0.67 16 43 H 0.11 0.87 7.64 -51.93 -0.40 0.48 16 44 H 0.11 1.06 8.09 -51.93 -0.42 0.64 16 45 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.11 0.97 7.93 -51.93 -0.41 0.56 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -29.87 357.07 -8.66 -38.52 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.06 Total: 0.46 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.49 Total: 2.45 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.62 Total: -49.51 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.10 Total: -9.00 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.06 Total: -4.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.87 -8.66 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088109159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.113 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds