Wall clock time and date at job start Tue Mar 31 2020 16:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48499 * 109.46920 * 239.99378 * 3 2 1 5 5 H 1.48504 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47429 * 119.99351 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21546 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.47847 * 119.99883 * 180.02562 * 15 14 13 18 18 C 1.39604 * 120.26877 * 359.72157 * 17 15 14 19 19 C 1.37632 * 119.61938 * 179.90234 * 18 17 15 20 20 C 1.39069 * 120.75223 * 0.51559 * 19 18 17 21 21 C 1.37832 * 119.90531 * 359.45642 * 20 19 18 22 22 C 1.38646 * 119.82409 * 0.42505 * 21 20 19 23 23 C 1.50661 * 122.54737 * 180.81507 * 21 20 19 24 24 C 1.52727 * 110.60678 * 341.98558 * 23 21 20 25 25 C 1.53320 * 108.39525 * 51.13404 * 24 23 21 26 26 C 1.50682 * 117.60734 * 179.13194 * 20 19 18 27 27 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 28 28 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 30 30 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 31 31 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 32 32 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 33 33 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 34 34 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 35 35 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 36 36 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 37 37 H 1.08007 * 120.19039 * 0.14285 * 18 17 15 38 38 H 1.08006 * 119.62068 * 180.24965 * 19 18 17 39 39 H 1.07998 * 119.78343 * 179.68103 * 22 21 20 40 40 H 1.08993 * 109.25144 * 102.27138 * 23 21 20 41 41 H 1.08998 * 109.25081 * 221.69870 * 23 21 20 42 42 H 1.08995 * 109.67928 * 291.40642 * 24 23 21 43 43 H 1.09003 * 109.71073 * 170.87739 * 24 23 21 44 44 H 1.08997 * 109.67888 * 170.40419 * 25 24 23 45 45 H 1.08994 * 109.68115 * 49.85171 * 25 24 23 46 46 H 1.08995 * 109.25528 * 282.47776 * 26 20 19 47 47 H 1.09007 * 109.25177 * 41.90243 * 26 20 19 48 48 H 1.09001 * 113.61158 * 203.66864 * 27 10 9 49 49 H 1.08998 * 113.61196 * 334.56885 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6459 -6.5453 -1.2576 14 7 0.0448 -6.6652 -2.5882 15 6 -0.1381 -7.8821 -3.1378 16 8 0.1953 -8.8802 -2.5293 17 6 -0.7442 -8.0031 -4.4809 18 6 -1.1345 -6.8609 -5.1823 19 6 -1.6955 -6.9890 -6.4325 20 6 -1.8878 -8.2437 -7.0005 21 6 -1.5041 -9.3753 -6.3133 22 6 -0.9358 -9.2578 -5.0542 23 6 -1.6680 -10.7619 -6.8793 24 6 -2.6722 -10.7576 -8.0300 25 6 -2.2694 -9.6579 -9.0195 26 6 -2.5262 -8.3025 -8.3641 27 6 1.2467 -4.8365 0.5617 28 1 -0.4849 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 3.0559 -3.5695 0.4304 31 1 1.8839 -3.7164 -2.2045 32 1 2.8651 -5.0720 -1.4967 33 1 -0.1652 -4.5095 -1.1102 34 1 1.6445 -6.9821 -1.2693 35 1 0.0275 -7.0720 -0.5308 36 1 -0.2209 -5.8688 -3.0738 37 1 -0.9934 -5.8822 -4.7479 38 1 -1.9937 -6.1051 -6.9768 39 1 -0.6401 -10.1451 -4.5141 40 1 -0.7045 -11.1171 -7.2446 41 1 -2.0230 -11.4305 -6.0951 42 1 -3.6715 -10.5563 -7.6443 43 1 -2.6604 -11.7252 -8.5318 44 1 -2.8655 -9.7452 -9.9279 45 1 -1.2114 -9.7531 -9.2635 46 1 -3.6007 -8.1490 -8.2649 47 1 -2.1077 -7.5151 -8.9912 48 1 1.8648 -5.6494 0.9428 49 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091354765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:46 Heat of formation + Delta-G solvation = -3.864190 kcal Electronic energy + Delta-G solvation = -26647.149966 eV Core-core repulsion = 22959.555204 eV Total energy + Delta-G solvation = -3687.594762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65216 -39.43896 -38.43092 -36.17799 -34.71489 -33.23046 -32.88441 -31.00071 -30.03201 -29.21459 -27.39309 -25.07279 -24.45751 -23.65427 -23.39718 -22.49855 -21.66367 -21.06641 -19.49976 -18.42243 -17.75105 -17.20182 -16.39208 -16.05906 -15.49235 -15.40468 -14.99809 -14.85579 -14.67983 -14.25799 -14.14248 -14.13369 -13.70213 -13.59131 -13.40880 -13.09279 -12.92588 -12.81934 -12.52335 -12.28356 -11.92644 -11.76403 -11.70048 -11.37444 -11.30544 -11.05600 -10.90975 -10.84194 -10.79439 -10.50452 -10.22574 -10.15209 -9.80789 -9.70164 -9.47766 -9.11042 -9.01405 -8.89861 -8.78685 -7.01748 -5.82265 -3.11290 0.64855 1.09859 2.73867 3.16514 3.41266 3.45821 3.46671 3.65347 4.22859 4.25883 4.48622 4.54300 4.56868 4.69875 4.70651 4.81342 4.92013 5.04265 5.08779 5.11452 5.13399 5.18118 5.22537 5.41137 5.43937 5.46073 5.49423 5.58411 5.61388 5.63563 5.69859 5.71645 5.80375 5.86016 5.89670 5.94790 6.08631 6.09470 6.16275 6.20832 6.30499 6.36119 6.41195 6.58159 6.65665 6.73381 6.88972 7.03158 7.50745 7.67112 8.18863 8.36957 9.47549 10.05111 10.39439 11.40080 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002037 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.328843 B =13739.763301 C =14961.929180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.168 4.168 12 C -0.120 4.120 13 C 0.131 3.869 14 N -0.718 5.718 15 C 0.555 3.445 16 O -0.545 6.545 17 C -0.134 4.134 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.054 4.054 21 C -0.087 4.087 22 C -0.060 4.060 23 C -0.081 4.081 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.084 4.084 27 C -0.147 4.147 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.402 0.598 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -20.898 -16.991 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.209 4.209 12 C -0.139 4.139 13 C 0.008 3.992 14 N -0.369 5.369 15 C 0.343 3.657 16 O -0.424 6.424 17 C -0.137 4.137 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.055 4.055 21 C -0.087 4.087 22 C -0.079 4.079 23 C -0.118 4.118 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.121 4.121 27 C -0.186 4.186 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.376 -21.402 -16.498 27.552 hybrid contribution -0.016 1.453 -0.207 1.468 sum -5.392 -19.949 -16.704 26.572 Atomic orbital electron populations 1.69650 1.05128 1.25895 1.57419 1.24765 0.95551 0.97790 1.02792 0.86240 0.78512 0.83363 0.77897 1.21230 1.21687 1.21194 1.19244 0.91099 0.83979 1.43043 0.91046 1.42158 1.05658 0.99413 1.87207 1.21057 0.95043 0.85613 0.92820 1.23935 0.95501 0.99580 1.01924 1.22763 0.99625 0.92943 0.98552 1.21508 0.98054 0.97195 0.82454 1.45997 1.63036 1.08056 1.19851 1.18278 0.78477 0.83493 0.85485 1.90749 1.51494 1.36731 1.63390 1.19888 1.04052 0.94516 0.95266 1.21275 0.96791 0.97829 0.94664 1.21115 1.00552 0.97169 0.95651 1.19840 0.97187 0.92426 0.96008 1.19575 0.99849 0.95119 0.94188 1.21269 0.95482 0.97097 0.94060 1.20479 1.00175 0.92966 0.98140 1.21554 0.99154 0.99002 0.96071 1.21556 1.01969 0.94208 0.98101 1.20547 1.00645 0.98444 0.92485 1.23418 1.00592 0.99662 0.94955 0.93394 0.78119 0.92039 0.91493 0.91396 0.88895 0.91441 0.91687 0.76286 0.85360 0.85417 0.84830 0.90463 0.90540 0.91529 0.91322 0.91327 0.91496 0.90272 0.90434 0.90407 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -17.24 5.31 -52.64 -0.28 -17.52 16 10 C 0.17 3.23 4.55 -67.12 -0.31 2.93 16 11 C -0.17 -2.79 7.45 -25.78 -0.19 -2.99 16 12 C -0.12 -1.80 3.64 -89.67 -0.33 -2.12 16 13 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 14 N -0.72 -9.33 5.51 -61.25 -0.34 -9.67 16 15 C 0.56 7.95 7.78 -12.33 -0.10 7.85 16 16 O -0.54 -9.50 16.34 5.33 0.09 -9.41 16 17 C -0.13 -1.63 5.87 -105.07 -0.62 -2.24 16 18 C -0.09 -0.89 9.54 -39.29 -0.37 -1.26 16 19 C -0.13 -1.15 9.58 -39.49 -0.38 -1.52 16 20 C -0.05 -0.48 5.75 -104.47 -0.60 -1.08 16 21 C -0.09 -0.82 5.73 -104.64 -0.60 -1.42 16 22 C -0.06 -0.68 9.16 -39.05 -0.36 -1.04 16 23 C -0.08 -0.57 5.66 -28.04 -0.16 -0.73 16 24 C -0.12 -0.68 5.98 -26.71 -0.16 -0.84 16 25 C -0.12 -0.66 5.98 -26.71 -0.16 -0.82 16 26 C -0.08 -0.53 5.67 -28.03 -0.16 -0.69 16 27 C -0.15 -2.34 7.38 -25.92 -0.19 -2.53 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.38 9.93 7.90 -40.82 -0.32 9.61 16 30 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 31 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.40 4.54 6.52 -40.82 -0.27 4.27 16 37 H 0.13 1.12 6.43 -52.48 -0.34 0.79 16 38 H 0.13 0.90 8.05 -52.48 -0.42 0.47 16 39 H 0.13 1.52 7.63 -52.49 -0.40 1.12 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.43 8.12 -51.93 -0.42 0.00 16 48 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -31.85 394.02 -11.86 -43.70 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.02 Total: 10.77 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -4.94 Total: -13.95 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.11 Total: -54.11 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.85 -11.86 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091354765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.839 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds