Wall clock time and date at job start Tue Mar 31 2020 15:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47551 * 2 1 4 4 C 1.42902 * 114.00281 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.84955 * 18.80497 * 4 3 2 6 6 C 1.53774 * 113.68898 * 247.53437 * 4 3 2 7 7 C 1.53782 * 87.08012 * 220.00817 * 6 4 3 8 8 H 1.09007 * 113.68762 * 270.87441 * 7 6 4 9 9 N 1.46499 * 113.61639 * 139.98393 * 7 6 4 10 10 C 1.34775 * 120.00012 * 107.50293 * 9 7 6 11 11 O 1.21342 * 120.00178 * 0.02562 * 10 9 7 12 12 C 1.49455 * 119.99874 * 180.02562 * 10 9 7 13 13 O 1.21352 * 119.99706 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99874 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99531 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00290 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00258 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99506 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00308 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46854 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47025 * 119.99441 * 22 20 18 25 25 H 1.48498 * 109.46692 * 239.99413 * 22 20 18 26 26 C 1.53776 * 87.08252 * 25.43040 * 7 6 4 27 27 H 1.08994 * 113.61819 * 219.93670 * 26 7 6 28 28 O 1.42904 * 113.61362 * 89.11677 * 26 7 6 29 29 C 1.42904 * 114.00102 * 150.00158 * 28 26 7 30 30 H 1.08998 * 109.47008 * 300.00270 * 1 2 3 31 31 H 1.09001 * 109.47378 * 59.99905 * 1 2 3 32 32 H 1.08997 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47044 * 239.99844 * 2 1 3 34 34 H 1.09001 * 109.47378 * 120.00095 * 2 1 3 35 35 H 1.09001 * 113.61337 * 105.46156 * 6 4 3 36 36 H 1.08995 * 113.61590 * 334.55066 * 6 4 3 37 37 H 0.96998 * 119.99822 * 287.49822 * 9 7 6 38 38 H 0.96992 * 120.00503 * 359.97438 * 14 12 10 39 39 H 1.09001 * 109.46891 * 60.00097 * 15 14 12 40 40 H 1.08993 * 109.47378 * 299.99469 * 15 14 12 41 41 H 1.09001 * 109.46801 * 300.00349 * 16 15 14 42 42 H 1.09001 * 109.46998 * 59.99945 * 16 15 14 43 43 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 44 44 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 45 45 H 0.96999 * 119.99910 * 180.02562 * 21 20 18 46 46 H 1.08991 * 109.46845 * 60.00117 * 29 28 26 47 47 H 1.09000 * 109.46749 * 180.02562 * 29 28 26 48 48 H 1.09000 * 109.46740 * 299.99761 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9278 0.5456 -0.3247 6 6 4.0049 2.0451 1.3006 7 6 4.9914 2.8300 0.4199 8 1 5.9155 2.2912 0.2102 9 7 5.2243 4.2017 0.8785 10 6 6.3983 4.5300 1.4532 11 8 7.2627 3.6895 1.5904 12 6 6.6356 5.9293 1.9216 13 8 5.7713 6.7699 1.7839 14 7 7.8098 6.2577 2.4958 15 6 8.0426 7.6295 2.9544 16 6 9.4423 7.7330 3.5636 17 6 9.6851 9.1654 4.0431 18 6 11.0640 9.2675 4.6426 19 1 11.7030 8.3976 4.6784 20 6 11.5094 10.4712 5.1463 21 7 10.7310 11.5304 5.1031 22 14 13.2183 10.5976 5.8901 23 1 13.8881 9.2742 5.8189 24 1 14.0145 11.5972 5.1338 25 1 13.1103 11.0217 7.3091 26 6 3.9485 2.7252 -0.7052 27 1 4.3824 2.5335 -1.6865 28 8 3.0072 3.8004 -0.7152 29 6 2.5055 4.1217 -2.0141 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.4845 1.3028 1.9387 36 1 3.3025 2.6793 1.8413 37 1 4.5335 4.8737 0.7684 38 1 8.5008 5.5859 2.6055 39 1 7.2989 7.8921 3.7067 40 1 7.9622 8.3135 2.1096 41 1 9.5222 7.0489 4.4084 42 1 10.1862 7.4701 2.8116 43 1 9.6049 9.8498 3.1985 44 1 8.9412 9.4278 4.7953 45 1 11.0444 12.3774 5.4571 46 1 2.0034 3.2508 -2.4352 47 1 1.7980 4.9472 -1.9363 48 1 3.3329 4.4125 -2.6614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117306790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:46 Heat of formation + Delta-G solvation = -148.399339 kcal Electronic energy + Delta-G solvation = -27429.785467 eV Core-core repulsion = 23292.781176 eV Total energy + Delta-G solvation = -4137.004291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03158 -40.03455 -38.36255 -37.59827 -36.16513 -35.58240 -33.59093 -33.12784 -31.26000 -31.22769 -27.35348 -27.27849 -25.70915 -25.37061 -23.82217 -23.20702 -22.29077 -20.75642 -20.50592 -20.01302 -18.40987 -17.94638 -16.81446 -16.67317 -16.35195 -16.24275 -16.04752 -15.87536 -15.42053 -15.28331 -14.72040 -14.58461 -14.41239 -14.22147 -13.92136 -13.68900 -13.60620 -13.23692 -12.99886 -12.36867 -12.30814 -12.12490 -11.90835 -11.88331 -11.85969 -11.77023 -11.65054 -11.34403 -11.25091 -10.92331 -10.74707 -10.57337 -10.28066 -9.89165 -9.75948 -9.69206 -9.36868 -9.34137 -9.10738 -8.94797 -8.37426 -6.01984 -4.04862 1.43443 2.30080 3.03535 3.22073 3.30753 3.34724 3.38333 3.42280 3.78396 3.93370 4.07109 4.32601 4.44494 4.46522 4.54103 4.59470 4.64132 4.78843 4.90044 4.92561 5.00811 5.07590 5.19345 5.34118 5.34166 5.41484 5.45758 5.49821 5.61695 5.64400 5.70876 5.71425 6.03295 6.10238 6.30145 6.55880 6.61667 6.71973 6.88821 6.96657 7.00159 7.46013 7.63108 7.74679 7.76110 7.96644 8.08838 8.37950 9.01915 9.59525 11.09325 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.001653 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.189148 B =16930.578118 C =17278.906958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.048 3.952 5 H 0.097 0.903 6 C -0.161 4.161 7 C 0.122 3.878 8 H 0.130 0.870 9 N -0.683 5.683 10 C 0.510 3.490 11 O -0.524 6.524 12 C 0.500 3.500 13 O -0.523 6.523 14 N -0.692 5.692 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.064 3.936 27 H 0.085 0.915 28 O -0.351 6.351 29 C 0.034 3.966 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.422 0.578 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.260 0.740 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.542 -24.747 -15.066 34.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.275 6.275 4 C -0.011 4.011 5 H 0.115 0.885 6 C -0.200 4.200 7 C 0.016 3.984 8 H 0.148 0.852 9 N -0.337 5.337 10 C 0.291 3.709 11 O -0.400 6.400 12 C 0.279 3.721 13 O -0.400 6.400 14 N -0.344 5.344 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.004 3.996 27 H 0.103 0.897 28 O -0.269 6.269 29 C -0.062 4.062 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.260 0.740 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.730 -24.265 -14.847 34.619 hybrid contribution 1.138 -0.222 0.187 1.174 sum -18.593 -24.487 -14.660 34.062 Atomic orbital electron populations 1.21731 0.93664 1.02200 1.03245 1.22568 0.95798 0.84117 0.99963 1.88053 1.19218 1.25780 1.94461 1.24046 0.82513 0.97521 0.97066 0.88487 1.23952 0.98359 1.00081 0.97588 1.22674 0.97714 0.83573 0.94437 0.85248 1.45459 1.16971 1.12037 1.59186 1.20418 0.82674 0.89159 0.78615 1.90742 1.43754 1.50828 1.54654 1.19984 0.83714 0.88227 0.80145 1.90772 1.43621 1.50454 1.55157 1.46062 1.15895 1.14172 1.58242 1.21844 0.99639 0.79943 0.99418 1.21927 0.92232 1.02370 0.99529 1.19040 0.97039 0.88787 0.96537 1.21244 1.00123 0.95550 1.39129 0.92515 1.25027 0.97503 0.95874 0.96047 1.69975 1.36329 1.00558 1.46412 0.86519 0.84436 0.78069 0.78878 1.19731 1.21009 1.21010 1.23935 0.89615 0.87675 0.98376 0.89704 1.87848 1.59227 1.50472 1.29305 1.22844 0.98569 1.00651 0.84136 0.91720 0.91911 0.91167 0.93503 0.93292 0.90310 0.87990 0.73973 0.75345 0.91087 0.91095 0.92433 0.92440 0.96179 0.96168 0.92988 0.93681 0.89182 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.15 0.38 -0.38 16 2 C 0.05 0.30 6.50 37.15 0.24 0.54 16 3 O -0.36 -2.96 9.98 -50.28 -0.50 -3.46 16 4 C 0.05 0.33 4.25 -25.92 -0.11 0.22 16 5 H 0.10 0.44 7.87 -51.93 -0.41 0.03 16 6 C -0.16 -1.30 7.65 -25.92 -0.20 -1.49 16 7 C 0.12 1.05 4.19 -67.12 -0.28 0.77 16 8 H 0.13 1.05 7.46 -51.92 -0.39 0.67 16 9 N -0.68 -7.54 5.32 -53.45 -0.28 -7.82 16 10 C 0.51 6.86 7.89 -11.58 -0.09 6.77 16 11 O -0.52 -7.73 16.08 5.50 0.09 -7.64 16 12 C 0.50 7.69 7.89 -11.58 -0.09 7.60 16 13 O -0.52 -9.22 16.48 5.50 0.09 -9.13 16 14 N -0.69 -10.57 5.55 -60.72 -0.34 -10.90 16 15 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 16 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 17 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.06 0.47 4.26 -25.92 -0.11 0.36 16 27 H 0.09 0.47 7.87 -51.93 -0.41 0.06 16 28 O -0.35 -3.18 9.17 -50.28 -0.46 -3.64 16 29 C 0.03 0.23 10.85 101.05 1.10 1.32 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.21 8.14 -51.92 -0.42 -0.21 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.42 4.77 7.27 -40.82 -0.30 4.47 16 38 H 0.41 5.70 7.94 -40.82 -0.32 5.37 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -33.21 405.68 -7.58 -40.80 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.13 Total: 2.98 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 0.12 Total: 2.19 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.12 Total: -44.73 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.78 Total: -23.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.21 -7.58 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.601 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds