Wall clock time and date at job start Tue Mar 31 2020 15:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47417 * 2 1 4 4 C 1.37478 * 127.17957 * 83.58678 * 3 2 1 5 5 C 1.47986 * 126.46974 * 359.97303 * 4 3 2 6 6 C 1.41011 * 126.25686 * 344.69827 * 5 4 3 7 7 N 1.30635 * 108.08479 * 180.02562 * 6 5 4 8 8 N 1.39993 * 108.58743 * 359.97438 * 7 6 5 9 9 C 1.46506 * 125.87075 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.46682 * 305.01792 * 9 8 7 11 11 H 1.08001 * 120.00328 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99930 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99717 * 0.27395 * 12 10 9 14 14 Si 1.86801 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47154 * 90.00148 * 14 12 10 16 16 H 1.48501 * 109.46710 * 209.99971 * 14 12 10 17 17 H 1.48501 * 109.47205 * 329.99499 * 14 12 10 18 18 C 1.34816 * 108.26168 * 0.26044 * 8 7 6 19 19 N 1.31216 * 107.05476 * 179.71796 * 4 3 2 20 20 N 1.28503 * 109.96792 * 0.25942 * 19 4 3 21 21 C 1.31218 * 110.09880 * 0.02562 * 20 19 4 22 22 N 1.38574 * 126.37961 * 180.02562 * 21 20 19 23 23 C 1.46845 * 111.00304 * 21.66036 * 22 21 20 24 24 C 1.50145 * 110.27734 * 287.52175 * 23 22 21 25 25 C 1.29832 * 123.28416 * 342.97977 * 24 23 22 26 26 C 1.50310 * 122.88875 * 0.33970 * 25 24 23 27 27 C 1.47237 * 111.00438 * 258.72338 * 22 21 20 28 28 H 1.08994 * 109.47199 * 59.99442 * 1 2 3 29 29 H 1.08993 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46794 * 300.00277 * 1 2 3 31 31 H 1.09001 * 109.46759 * 240.00241 * 2 1 3 32 32 H 1.09000 * 109.47420 * 120.00227 * 2 1 3 33 33 H 1.07999 * 125.95957 * 359.97438 * 6 5 4 34 34 H 1.09003 * 109.47047 * 185.02369 * 9 8 7 35 35 H 1.08994 * 109.47280 * 65.02090 * 9 8 7 36 36 H 0.97004 * 120.00569 * 359.73061 * 13 12 10 37 37 H 1.08000 * 126.21728 * 179.73625 * 18 8 7 38 38 H 1.09005 * 109.33790 * 47.77724 * 23 22 21 39 39 H 1.08999 * 109.34159 * 167.28800 * 23 22 21 40 40 H 1.07999 * 118.35734 * 162.94505 * 24 23 22 41 41 H 1.07993 * 118.55161 * 180.35187 * 25 24 23 42 42 H 1.09003 * 109.42394 * 223.44889 * 26 25 24 43 43 H 1.08995 * 109.39340 * 103.57187 * 26 25 24 44 44 H 1.08997 * 109.63839 * 174.27533 * 27 22 21 45 45 H 1.08996 * 109.63988 * 294.89350 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1800 2.2052 1.0885 5 6 1.8910 1.8655 2.4996 6 6 1.1285 0.7700 2.9543 7 7 1.1006 0.8093 4.2597 8 7 1.8371 1.9199 4.6886 9 6 2.0524 2.3216 6.0809 10 6 0.7214 2.4762 6.7706 11 1 -0.1933 2.2931 6.2263 12 6 0.6713 2.8514 8.0964 13 7 1.7850 3.0796 8.7576 14 14 -0.9785 3.0422 8.9514 15 1 -1.3731 1.7467 9.5605 16 1 -0.8694 4.0753 10.0126 17 1 -2.0044 3.4565 7.9609 18 6 2.3099 2.5592 3.5999 19 7 2.6441 3.3479 0.6406 20 7 2.7767 3.2973 -0.6366 21 6 2.4052 2.1203 -1.0823 22 7 2.4111 1.7023 -2.4034 23 6 3.3385 2.5093 -3.2066 24 6 2.7768 3.8846 -3.4247 25 6 1.5255 4.1801 -3.2442 26 6 0.5065 3.1731 -2.7892 27 6 1.0577 1.7578 -2.9806 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.6502 0.0283 2.3318 34 1 2.5872 3.2710 6.1066 35 1 2.6402 1.5594 6.5923 36 1 2.6418 2.9802 8.3137 37 1 2.9123 3.4556 3.5977 38 1 4.2930 2.5875 -2.6859 39 1 3.4949 2.0265 -4.1712 40 1 3.4474 4.6673 -3.7472 41 1 1.2027 5.1938 -3.4294 42 1 -0.4050 3.2895 -3.3755 43 1 0.2828 3.3357 -1.7349 44 1 1.1031 1.5231 -4.0440 45 1 0.4128 1.0416 -2.4716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121746197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:00 Heat of formation + Delta-G solvation = 185.535759 kcal Electronic energy + Delta-G solvation = -27990.062322 eV Core-core repulsion = 24239.432966 eV Total energy + Delta-G solvation = -3750.629357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.84259 -40.62779 -39.46419 -35.83526 -34.19167 -33.28145 -31.78257 -31.26504 -31.05544 -30.49258 -28.44848 -26.77225 -25.08177 -24.23968 -23.66813 -23.47189 -22.11332 -21.28467 -20.12545 -19.84921 -18.54186 -17.43996 -16.95839 -16.66209 -16.20962 -16.17031 -15.15455 -15.11411 -14.89511 -14.42048 -14.40508 -13.91239 -13.76563 -13.43951 -13.32965 -13.16410 -12.86932 -12.56495 -12.47918 -12.40255 -12.30673 -11.97870 -11.89725 -11.60301 -11.33647 -11.24808 -11.14235 -10.81879 -10.47724 -10.21978 -10.20598 -10.08941 -9.73028 -9.41735 -9.12700 -8.90466 -8.69764 -8.55758 -7.55234 -6.65389 -4.40458 1.60586 2.11730 2.24834 2.48106 2.77108 3.19806 3.34651 3.37206 3.52950 3.54426 3.59409 4.35230 4.42300 4.43269 4.58761 4.65724 4.69386 4.74153 4.81503 4.95614 5.04088 5.08823 5.13356 5.15827 5.22176 5.28940 5.31261 5.35955 5.40481 5.47786 5.59620 5.69023 5.78371 5.86778 5.87600 6.04057 6.29485 6.34056 6.42118 6.45537 6.59250 6.62872 6.76616 6.94060 7.22984 7.49320 7.58005 8.21584 8.25053 8.52454 8.96247 9.27774 10.72755 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.002675 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.127657 B =10465.577390 C =10720.478190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 N -0.472 5.472 4 C 0.294 3.706 5 C -0.208 4.208 6 C 0.032 3.968 7 N -0.269 5.269 8 N -0.314 5.314 9 C 0.244 3.756 10 C -0.611 4.611 11 H 0.065 0.935 12 C 0.025 3.975 13 N -0.902 5.902 14 Si 1.080 2.920 15 H -0.284 1.284 16 H -0.281 1.281 17 H -0.287 1.287 18 C 0.109 3.891 19 N -0.298 5.298 20 N -0.301 5.301 21 C 0.332 3.668 22 N -0.450 5.450 23 C 0.099 3.901 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.124 4.124 27 C 0.052 3.948 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.179 0.821 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -5.359 -25.379 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 N -0.166 5.166 4 C 0.029 3.971 5 C -0.224 4.224 6 C -0.155 4.155 7 N -0.090 5.090 8 N -0.091 5.091 9 C 0.126 3.874 10 C -0.649 4.649 11 H 0.083 0.917 12 C -0.180 4.180 13 N -0.537 5.537 14 Si 0.907 3.093 15 H -0.211 1.211 16 H -0.207 1.207 17 H -0.213 1.213 18 C -0.046 4.046 19 N -0.138 5.138 20 N -0.145 5.145 21 C -0.023 4.023 22 N -0.173 5.173 23 C -0.028 4.028 24 C -0.187 4.187 25 C -0.164 4.164 26 C -0.162 4.162 27 C -0.075 4.075 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.194 0.806 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.196 0.804 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.757 -4.607 -22.713 23.188 hybrid contribution 0.308 -0.466 -2.250 2.318 sum -0.448 -5.073 -24.962 25.477 Atomic orbital electron populations 1.22367 0.94144 1.03638 1.03617 1.21911 0.95518 0.79285 1.05187 1.46188 1.51120 1.13328 1.05975 1.21818 1.00378 0.87156 0.87743 1.17199 1.14953 1.03234 0.87022 1.23980 1.00273 0.98484 0.92766 1.77345 1.14433 1.05964 1.11239 1.49230 1.34393 1.17591 1.07932 1.19910 0.99664 0.95772 0.72046 1.22085 0.91683 1.52365 0.98813 0.91660 1.25935 1.04951 0.92968 0.94151 1.70823 0.98288 1.44931 1.39702 0.83374 0.73227 0.77146 0.75594 1.21053 1.20673 1.21252 1.22541 0.98180 0.97986 0.85858 1.74372 1.19064 1.17784 1.02618 1.74597 1.21784 1.14221 1.03878 1.22191 1.04034 0.88367 0.87757 1.59395 1.09654 1.51773 0.96450 1.20973 0.95139 0.89448 0.97214 1.22489 0.96428 0.98368 1.01455 1.21890 0.94813 0.99238 1.00490 1.21041 0.98559 0.94527 1.02085 1.22500 0.87579 0.96577 1.00820 0.91850 0.89950 0.90885 0.88167 0.88456 0.80601 0.93335 0.94246 0.92172 0.80407 0.89014 0.88570 0.87064 0.87666 0.90274 0.90927 0.88897 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.53 37.16 0.35 -1.10 16 2 C 0.10 0.98 6.05 -4.05 -0.02 0.96 16 3 N -0.47 -6.32 2.83 -114.61 -0.32 -6.65 16 4 C 0.29 4.91 7.91 -153.83 -1.22 3.70 16 5 C -0.21 -3.68 6.05 -105.42 -0.64 -4.32 16 6 C 0.03 0.55 10.29 -17.01 -0.17 0.38 16 7 N -0.27 -5.72 12.36 30.83 0.38 -5.34 16 8 N -0.31 -6.89 3.66 -62.22 -0.23 -7.12 16 9 C 0.24 5.93 5.57 -5.19 -0.03 5.90 16 10 C -0.61 -16.70 9.23 -34.44 -0.32 -17.02 16 11 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 12 C 0.03 0.69 5.46 -17.82 -0.10 0.59 16 13 N -0.90 -25.82 13.65 55.43 0.76 -25.07 16 14 Si 1.08 24.55 29.90 -169.99 -5.08 19.46 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.11 2.09 11.40 -16.81 -0.19 1.90 16 19 N -0.30 -5.49 12.21 32.60 0.40 -5.09 16 20 N -0.30 -5.00 10.07 30.35 0.31 -4.69 16 21 C 0.33 4.53 5.28 -318.61 -1.68 2.85 16 22 N -0.45 -4.65 5.02 -175.86 -0.88 -5.53 16 23 C 0.10 0.92 5.68 -5.27 -0.03 0.89 16 24 C -0.17 -1.66 8.82 -35.97 -0.32 -1.97 16 25 C -0.15 -1.50 9.33 -35.89 -0.33 -1.84 16 26 C -0.12 -1.20 5.62 -28.03 -0.16 -1.36 16 27 C 0.05 0.43 6.02 -3.59 -0.02 0.41 16 28 H 0.06 0.50 6.04 -51.93 -0.31 0.18 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.74 6.29 -51.93 -0.33 0.41 16 31 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.10 0.91 6.63 -51.93 -0.34 0.57 16 33 H 0.18 2.32 4.52 -52.49 -0.24 2.08 16 34 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.04 0.99 8.01 -51.93 -0.42 0.58 16 36 H 0.27 7.48 7.22 -40.82 -0.29 7.18 16 37 H 0.18 3.05 8.06 -52.49 -0.42 2.63 16 38 H 0.09 0.95 7.98 -51.93 -0.41 0.54 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.93 7.47 -51.93 -0.39 0.54 16 44 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 45 H 0.08 0.62 6.02 -51.93 -0.31 0.31 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -32.77 363.96 -10.11 -42.88 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.04 Total: 1.71 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -4.88 Total: -10.04 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.41 Total: -59.50 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.77 -10.11 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121746197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.413 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds