Wall clock time and date at job start Tue Mar 31 2020 15:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47417 * 2 1 4 4 C 1.37478 * 127.17957 * 83.58678 * 3 2 1 5 5 C 1.47986 * 126.46974 * 359.97303 * 4 3 2 6 6 C 1.41011 * 126.25686 * 344.69827 * 5 4 3 7 7 N 1.30635 * 108.08479 * 180.02562 * 6 5 4 8 8 N 1.39993 * 108.58743 * 359.97438 * 7 6 5 9 9 C 1.46506 * 125.87075 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.46682 * 305.01792 * 9 8 7 11 11 H 1.08001 * 120.00328 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99930 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99717 * 0.27395 * 12 10 9 14 14 Si 1.86801 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47154 * 90.00148 * 14 12 10 16 16 H 1.48501 * 109.46710 * 209.99971 * 14 12 10 17 17 H 1.48501 * 109.47205 * 329.99499 * 14 12 10 18 18 C 1.34816 * 108.26168 * 0.26044 * 8 7 6 19 19 N 1.31216 * 107.05476 * 179.71796 * 4 3 2 20 20 N 1.28503 * 109.96792 * 0.25942 * 19 4 3 21 21 C 1.31218 * 110.09880 * 0.02562 * 20 19 4 22 22 N 1.38574 * 126.37961 * 180.02562 * 21 20 19 23 23 C 1.46845 * 111.00304 * 21.66036 * 22 21 20 24 24 C 1.50145 * 110.27734 * 287.52175 * 23 22 21 25 25 C 1.29832 * 123.28416 * 342.97977 * 24 23 22 26 26 C 1.50310 * 122.88875 * 0.33970 * 25 24 23 27 27 C 1.47237 * 111.00438 * 258.72338 * 22 21 20 28 28 H 1.08994 * 109.47199 * 59.99442 * 1 2 3 29 29 H 1.08993 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46794 * 300.00277 * 1 2 3 31 31 H 1.09001 * 109.46759 * 240.00241 * 2 1 3 32 32 H 1.09000 * 109.47420 * 120.00227 * 2 1 3 33 33 H 1.07999 * 125.95957 * 359.97438 * 6 5 4 34 34 H 1.09003 * 109.47047 * 185.02369 * 9 8 7 35 35 H 1.08994 * 109.47280 * 65.02090 * 9 8 7 36 36 H 0.97004 * 120.00569 * 359.73061 * 13 12 10 37 37 H 1.08000 * 126.21728 * 179.73625 * 18 8 7 38 38 H 1.09005 * 109.33790 * 47.77724 * 23 22 21 39 39 H 1.08999 * 109.34159 * 167.28800 * 23 22 21 40 40 H 1.07999 * 118.35734 * 162.94505 * 24 23 22 41 41 H 1.07993 * 118.55161 * 180.35187 * 25 24 23 42 42 H 1.09003 * 109.42394 * 223.44889 * 26 25 24 43 43 H 1.08995 * 109.39340 * 103.57187 * 26 25 24 44 44 H 1.08997 * 109.63839 * 174.27533 * 27 22 21 45 45 H 1.08996 * 109.63988 * 294.89350 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1800 2.2052 1.0885 5 6 1.8910 1.8655 2.4996 6 6 1.1285 0.7700 2.9543 7 7 1.1006 0.8093 4.2597 8 7 1.8371 1.9199 4.6886 9 6 2.0524 2.3216 6.0809 10 6 0.7214 2.4762 6.7706 11 1 -0.1933 2.2931 6.2263 12 6 0.6713 2.8514 8.0964 13 7 1.7850 3.0796 8.7576 14 14 -0.9785 3.0422 8.9514 15 1 -1.3731 1.7467 9.5605 16 1 -0.8694 4.0753 10.0126 17 1 -2.0044 3.4565 7.9609 18 6 2.3099 2.5592 3.5999 19 7 2.6441 3.3479 0.6406 20 7 2.7767 3.2973 -0.6366 21 6 2.4052 2.1203 -1.0823 22 7 2.4111 1.7023 -2.4034 23 6 3.3385 2.5093 -3.2066 24 6 2.7768 3.8846 -3.4247 25 6 1.5255 4.1801 -3.2442 26 6 0.5065 3.1731 -2.7892 27 6 1.0577 1.7578 -2.9806 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.6502 0.0283 2.3318 34 1 2.5872 3.2710 6.1066 35 1 2.6402 1.5594 6.5923 36 1 2.6418 2.9802 8.3137 37 1 2.9123 3.4556 3.5977 38 1 4.2930 2.5875 -2.6859 39 1 3.4949 2.0265 -4.1712 40 1 3.4474 4.6673 -3.7472 41 1 1.2027 5.1938 -3.4294 42 1 -0.4050 3.2895 -3.3755 43 1 0.2828 3.3357 -1.7349 44 1 1.1031 1.5231 -4.0440 45 1 0.4128 1.0416 -2.4716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121746197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:59 Heat of formation + Delta-G solvation = 166.727086 kcal Electronic energy + Delta-G solvation = -27990.877927 eV Core-core repulsion = 24239.432966 eV Total energy + Delta-G solvation = -3751.444962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.98160 -42.14058 -40.30379 -36.84143 -36.10148 -34.25205 -33.44458 -32.35216 -31.97952 -31.44755 -29.87304 -28.46974 -25.95099 -25.54648 -25.00215 -24.40178 -23.43589 -22.49086 -21.46453 -21.16669 -19.45650 -19.24398 -18.14350 -17.78465 -17.45761 -17.08988 -16.36523 -16.24239 -15.97056 -15.76895 -15.59708 -15.46940 -14.95597 -14.61682 -14.29266 -14.12200 -14.05075 -13.94545 -13.66920 -13.53270 -13.28567 -13.19980 -13.11941 -12.68879 -12.60829 -12.40137 -12.34555 -11.98063 -11.94816 -11.85720 -11.42196 -11.28329 -11.14927 -10.91163 -10.72340 -10.42521 -9.94711 -9.83008 -8.97063 -8.78014 -6.59189 0.35806 1.03813 1.16115 1.38577 1.50451 1.51088 1.57720 1.60646 1.78195 2.22817 2.46906 2.69970 2.98815 3.34662 3.54759 3.71392 3.73868 3.82073 3.90299 3.95766 4.02129 4.09447 4.18895 4.21120 4.32249 4.38597 4.48210 4.54189 4.56163 4.61326 4.69741 4.72794 4.77469 4.83505 4.87810 4.93105 5.02025 5.13928 5.23871 5.39738 5.49484 5.56891 5.58507 5.71399 5.77081 5.99333 6.13532 6.23131 6.34866 6.69931 7.16422 7.76346 8.56197 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.002675 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.127657 B =10465.577390 C =10720.478190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 N -0.465 5.465 4 C 0.278 3.722 5 C -0.197 4.197 6 C 0.056 3.944 7 N -0.311 5.311 8 N -0.338 5.338 9 C 0.254 3.746 10 C -0.622 4.622 11 H 0.049 0.951 12 C -0.018 4.018 13 N -0.923 5.923 14 Si 1.122 2.878 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.098 3.902 19 N -0.330 5.330 20 N -0.333 5.333 21 C 0.352 3.648 22 N -0.444 5.444 23 C 0.096 3.904 24 C -0.169 4.169 25 C -0.163 4.163 26 C -0.121 4.121 27 C 0.053 3.947 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.216 0.784 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.189 0.811 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.037 0.963 44 H 0.124 0.876 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -7.062 -28.147 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.159 5.159 4 C 0.011 3.989 5 C -0.213 4.213 6 C -0.131 4.131 7 N -0.132 5.132 8 N -0.116 5.116 9 C 0.135 3.865 10 C -0.660 4.660 11 H 0.067 0.933 12 C -0.218 4.218 13 N -0.559 5.559 14 Si 0.943 3.057 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.055 4.055 19 N -0.171 5.171 20 N -0.177 5.177 21 C -0.005 4.005 22 N -0.167 5.167 23 C -0.030 4.030 24 C -0.188 4.188 25 C -0.181 4.181 26 C -0.159 4.159 27 C -0.073 4.073 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.233 0.767 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.206 0.794 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.056 0.944 44 H 0.142 0.858 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.901 -6.331 -25.520 26.362 hybrid contribution 0.714 0.031 -1.665 1.812 sum -1.187 -6.300 -27.185 27.931 Atomic orbital electron populations 1.22361 0.92793 1.05389 1.02732 1.22313 0.96593 0.77203 1.06576 1.46368 1.50372 1.14310 1.04809 1.21543 1.01689 0.87781 0.87917 1.17271 1.13934 1.02725 0.87333 1.24559 0.98502 0.98367 0.91687 1.77282 1.16004 1.06618 1.13282 1.48918 1.36414 1.18879 1.07385 1.19516 0.98157 0.95255 0.73544 1.22281 0.92306 1.52218 0.99227 0.93273 1.27276 1.07323 0.92118 0.95049 1.70914 0.98564 1.46444 1.39982 0.82845 0.69896 0.77864 0.75102 1.19577 1.20062 1.20231 1.22848 0.98412 0.98494 0.85763 1.74268 1.19818 1.19153 1.03835 1.74523 1.23870 1.16122 1.03193 1.22588 1.01327 0.87458 0.89085 1.59615 1.11110 1.51171 0.94819 1.21130 0.94134 0.89419 0.98355 1.22645 0.96344 0.98990 1.00853 1.22021 0.95370 0.99544 1.01200 1.21021 0.99444 0.95379 1.00081 1.22682 0.86174 0.95797 1.02633 0.91393 0.86827 0.93078 0.85696 0.88206 0.76747 0.93233 0.95744 0.92896 0.79420 0.90346 0.85023 0.86616 0.87940 0.88277 0.94449 0.85790 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.53 71.98 0.69 -1.55 16 2 C 0.09 1.49 6.05 86.38 0.52 2.01 16 3 N -0.46 -11.66 2.83 -516.52 -1.46 -13.12 16 4 C 0.28 9.17 7.91 136.30 1.08 10.25 16 5 C -0.20 -6.95 6.05 -20.38 -0.12 -7.07 16 6 C 0.06 1.88 10.29 85.55 0.88 2.76 16 7 N -0.31 -13.37 12.36 -56.37 -0.70 -14.07 16 8 N -0.34 -15.28 3.66 -350.77 -1.28 -16.57 16 9 C 0.25 12.87 5.57 85.63 0.48 13.35 16 10 C -0.62 -34.88 9.23 25.60 0.24 -34.65 16 11 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 12 C -0.02 -0.99 5.46 84.66 0.46 -0.52 16 13 N -0.92 -53.76 13.65 21.45 0.29 -53.47 16 14 Si 1.12 49.39 29.90 68.60 2.05 51.44 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 18 C 0.10 3.86 11.40 83.86 0.96 4.81 16 19 N -0.33 -12.30 12.21 -50.77 -0.62 -12.92 16 20 N -0.33 -11.01 10.07 -57.89 -0.58 -11.59 16 21 C 0.35 9.03 5.28 260.02 1.37 10.41 16 22 N -0.44 -7.86 5.02 -710.29 -3.56 -11.42 16 23 C 0.10 1.53 5.68 85.39 0.49 2.02 16 24 C -0.17 -3.06 8.82 26.68 0.24 -2.83 16 25 C -0.16 -3.15 9.33 26.73 0.25 -2.90 16 26 C -0.12 -2.11 5.62 29.76 0.17 -1.94 16 27 C 0.05 0.69 6.02 86.27 0.52 1.21 16 28 H 0.07 0.83 6.04 -2.39 -0.01 0.81 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.90 6.29 -2.38 -0.01 0.89 16 31 H 0.12 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.10 1.56 6.63 -2.39 -0.02 1.55 16 33 H 0.22 5.17 4.52 -2.91 -0.01 5.16 16 34 H 0.05 2.46 7.93 -2.39 -0.02 2.44 16 35 H 0.02 1.30 8.01 -2.39 -0.02 1.28 16 36 H 0.26 15.06 7.22 -92.71 -0.67 14.39 16 37 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 38 H 0.08 1.50 7.98 -2.38 -0.02 1.48 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.12 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.10 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 0.93 7.47 -2.39 -0.02 0.91 16 44 H 0.12 0.93 8.08 -2.39 -0.02 0.91 16 45 H 0.09 1.03 6.02 -2.39 -0.01 1.01 16 Total: -1.00 -73.54 363.96 3.45 -70.09 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.11 Total: 16.27 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 8.20 Total: -4.65 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -7.92 Total: -133.16 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.05 Total: 51.44 kcal Total: -73.54 3.45 -70.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121746197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.821 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds