Wall clock time and date at job start Tue Mar 31 2020 15:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00166 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46240 * 34.97776 * 9 8 6 11 11 C 1.53036 * 109.46452 * 274.99879 * 9 8 6 12 12 C 1.53193 * 109.31578 * 178.61437 * 11 9 8 13 13 N 1.46919 * 108.77388 * 54.63764 * 12 11 9 14 14 C 1.34775 * 120.63352 * 126.41378 * 13 12 11 15 15 O 1.21274 * 120.00566 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99911 * 359.97438 * 14 13 12 17 17 C 1.50698 * 109.47431 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00005 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00212 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99716 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00216 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47186 * 60.00016 * 21 19 17 23 23 H 1.48501 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47387 * 300.00286 * 21 19 17 25 25 C 1.46929 * 118.74134 * 306.39005 * 13 12 11 26 26 C 1.53042 * 109.46186 * 154.93024 * 9 8 6 27 27 H 1.09002 * 109.49493 * 61.43108 * 26 9 8 28 28 O 1.42899 * 109.49655 * 301.34003 * 26 9 8 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 0.97000 * 119.99457 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.49581 * 298.56962 * 11 9 8 40 40 H 1.09007 * 109.49702 * 58.66073 * 11 9 8 41 41 H 1.09000 * 109.58474 * 174.42731 * 12 11 9 42 42 H 1.08995 * 109.58591 * 294.70592 * 12 11 9 43 43 H 1.09002 * 109.47004 * 300.00421 * 16 14 13 44 44 H 1.09012 * 109.47094 * 60.00238 * 16 14 13 45 45 H 0.96996 * 119.99495 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.59047 * 173.40105 * 25 13 12 47 47 H 1.08999 * 109.58244 * 293.82423 * 25 13 12 48 48 H 0.96702 * 114.00269 * 179.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 1.6740 -0.2034 -4.8136 10 1 1.6263 0.8832 -4.7431 11 6 0.2995 -0.7497 -5.2064 12 6 -0.1246 -0.1391 -6.5459 13 7 0.9308 -0.3922 -7.5361 14 6 0.6414 -0.9834 -8.7122 15 8 1.5214 -1.1866 -9.5216 16 6 -0.7757 -1.3922 -9.0216 17 6 -0.8289 -2.0262 -10.3877 18 1 0.0731 -2.1231 -10.9735 19 6 -2.0295 -2.4816 -10.8901 20 7 -3.1283 -2.3623 -10.1772 21 14 -2.0955 -3.2668 -12.5837 22 1 -1.2187 -4.4651 -12.6083 23 1 -3.4920 -3.6697 -12.8884 24 1 -1.6283 -2.2906 -13.6005 25 6 2.3076 0.0118 -7.2203 26 6 2.7044 -0.6004 -5.8732 27 1 2.7349 -1.6864 -5.9620 28 8 3.9931 -0.1161 -5.4903 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 2.6282 -1.5508 -3.4787 39 1 0.3526 -1.8342 -5.3015 40 1 -0.4293 -0.4866 -4.4396 41 1 -1.0555 -0.5983 -6.8784 42 1 -0.2686 0.9349 -6.4286 43 1 -1.1183 -2.1089 -8.2752 44 1 -1.4197 -0.5128 -9.0034 45 1 -3.9727 -2.6830 -10.5306 46 1 2.9815 -0.3478 -7.9978 47 1 2.3644 1.0986 -7.1586 48 1 4.6968 -0.3323 -6.1174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143196771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:22 Heat of formation + Delta-G solvation = -172.592851 kcal Electronic energy + Delta-G solvation = -29212.452167 eV Core-core repulsion = 25074.398766 eV Total energy + Delta-G solvation = -4138.053400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99023 -39.86635 -38.14392 -37.04017 -35.67230 -34.68750 -33.98357 -33.01527 -30.85770 -30.39943 -28.49785 -27.66952 -27.60050 -25.34749 -23.58892 -23.06619 -22.25789 -20.85877 -20.15131 -18.82435 -18.11711 -17.39486 -17.03275 -16.58675 -16.23841 -16.04458 -15.54358 -15.34270 -14.94044 -14.74903 -14.53984 -14.42285 -14.12792 -13.73500 -13.45193 -13.10332 -12.97786 -12.80259 -12.73580 -12.43559 -12.19552 -12.15000 -12.13621 -11.98878 -11.76701 -11.66977 -11.51896 -11.28722 -11.21841 -10.82933 -10.68501 -10.65671 -10.54774 -10.36462 -10.15118 -9.99132 -9.34786 -9.20425 -8.74544 -8.47058 -8.26298 -6.09321 -4.09229 2.01261 2.75777 3.34990 3.35011 3.37660 3.45051 3.54500 3.87566 4.00340 4.44923 4.46894 4.50946 4.58430 4.65633 4.82126 4.86632 5.10892 5.15729 5.20061 5.27442 5.28356 5.28944 5.39622 5.42986 5.50600 5.56661 5.61999 5.68555 5.71770 5.75003 5.83840 5.94988 6.02505 6.06621 6.15571 6.18835 6.28441 6.40160 6.85635 7.11490 7.25710 7.31521 7.40269 7.84836 7.93212 8.28911 8.29314 9.00293 9.08197 9.55914 11.02891 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.002502 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.529057 B =11189.629643 C =12035.327805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.183 4.183 4 C -0.141 4.141 5 O -0.367 6.367 6 C 0.652 3.348 7 O -0.568 6.568 8 N -0.698 5.698 9 C 0.175 3.825 10 H 0.099 0.901 11 C -0.145 4.145 12 C 0.112 3.888 13 N -0.628 5.628 14 C 0.519 3.481 15 O -0.543 6.543 16 C 0.008 3.992 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.056 3.944 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.085 3.915 26 C 0.086 3.914 27 H 0.067 0.933 28 O -0.560 6.560 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.405 0.595 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 4.621 22.148 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.240 4.240 4 C -0.198 4.198 5 O -0.282 6.282 6 C 0.406 3.594 7 O -0.458 6.458 8 N -0.355 5.355 9 C 0.071 3.929 10 H 0.117 0.883 11 C -0.185 4.185 12 C -0.012 4.012 13 N -0.366 5.366 14 C 0.312 3.688 15 O -0.419 6.419 16 C -0.031 4.031 17 C -0.549 4.549 18 H 0.092 0.908 19 C -0.145 4.145 20 N -0.540 5.540 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.039 4.039 26 C 0.025 3.975 27 H 0.085 0.915 28 O -0.365 6.365 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.240 0.760 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.814 5.194 22.257 24.873 hybrid contribution 0.371 -0.936 -1.140 1.521 sum 10.184 4.258 21.117 23.828 Atomic orbital electron populations 1.22522 0.93917 1.02982 1.04682 1.22049 0.94417 0.92170 0.81397 1.22513 1.01502 0.95400 1.04624 1.21859 1.02196 1.01140 0.94587 1.86295 1.71651 1.56459 1.13759 1.18045 0.78825 0.81512 0.81057 1.90897 1.41213 1.26725 1.86941 1.44667 1.55088 1.32816 1.02955 1.20971 0.92742 1.00097 0.79064 0.88312 1.22396 0.95947 1.01849 0.98284 1.21678 0.92122 1.00665 0.86720 1.48402 1.06973 1.62742 1.18480 1.22133 0.93808 0.74152 0.78730 1.90526 1.50018 1.54409 1.46900 1.19258 0.86353 0.98287 0.99200 1.21125 0.94882 1.38422 1.00496 0.90782 1.25001 0.95467 0.96019 0.98044 1.69942 0.98962 1.47294 1.37754 0.86480 0.76733 0.79795 0.83982 1.20142 1.21340 1.20111 1.22071 0.86265 0.99729 0.95868 1.22451 0.83367 0.98106 0.93566 0.91489 1.86525 1.17302 1.81324 1.51362 0.89211 0.92156 0.91222 0.91236 0.92254 0.89275 0.91477 0.91536 0.90194 0.76009 0.90645 0.89389 0.87640 0.91389 0.93343 0.93308 0.92786 0.88462 0.91213 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 2 C 0.14 1.29 1.13 -90.62 -0.10 1.19 16 3 C -0.18 -1.70 8.37 37.16 0.31 -1.39 16 4 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 5 O -0.37 -4.22 9.94 -40.29 -0.40 -4.62 16 6 C 0.65 8.29 8.02 54.06 0.43 8.73 16 7 O -0.57 -8.28 11.54 -19.28 -0.22 -8.50 16 8 N -0.70 -7.87 4.92 -58.69 -0.29 -8.16 16 9 C 0.17 2.08 2.12 -67.89 -0.14 1.94 16 10 H 0.10 1.32 7.57 -51.93 -0.39 0.93 16 11 C -0.15 -1.77 5.65 -26.61 -0.15 -1.93 16 12 C 0.11 1.57 6.34 -3.71 -0.02 1.55 16 13 N -0.63 -10.44 2.97 -172.78 -0.51 -10.96 16 14 C 0.52 11.41 7.69 -10.99 -0.08 11.32 16 15 O -0.54 -13.57 14.87 5.56 0.08 -13.49 16 16 C 0.01 0.20 3.81 -29.03 -0.11 0.09 16 17 C -0.51 -14.51 8.92 -34.44 -0.31 -14.82 16 18 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 21 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.09 1.17 6.06 -3.71 -0.02 1.15 16 26 C 0.09 0.98 3.14 -26.61 -0.08 0.89 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 O -0.56 -5.77 13.16 -35.23 -0.46 -6.24 16 29 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.41 3.93 8.71 -40.82 -0.36 3.57 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.11 1.61 5.93 -51.93 -0.31 1.30 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 1.20 7.69 -51.93 -0.40 0.80 16 44 H 0.05 1.22 7.94 -51.92 -0.41 0.80 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.10 1.44 7.01 -51.93 -0.36 1.07 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.38 2.53 9.08 45.56 0.41 2.94 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -33.71 383.96 -7.04 -40.75 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.99 Total: 5.57 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 0.26 Total: 8.16 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.07 Total: -44.24 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.00 Total: -32.85 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.71 -7.04 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.841 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds