Wall clock time and date at job start Tue Mar 31 2020 15:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47361 * 2 1 4 4 C 1.52998 * 109.47419 * 240.00095 * 2 1 3 5 5 O 1.45202 * 109.47421 * 119.99940 * 2 1 3 6 6 C 1.34630 * 116.99916 * 59.99637 * 5 2 1 7 7 O 1.21510 * 120.00124 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47067 * 136.05152 * 359.63378 * 8 6 5 10 10 C 1.53497 * 87.98534 * 153.13820 * 9 8 6 11 11 O 1.42905 * 114.38419 * 272.46719 * 10 9 8 12 12 C 1.52997 * 114.21050 * 139.65380 * 10 9 8 13 13 C 1.53000 * 109.47135 * 86.39941 * 12 10 9 14 14 N 1.46500 * 109.47027 * 180.02562 * 13 12 10 15 15 C 1.34776 * 119.99826 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00001 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99827 * 180.02562 * 15 14 13 18 18 C 1.50706 * 109.47157 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99849 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99971 * 180.02562 * 18 17 15 21 21 N 1.31517 * 119.99609 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99921 * 359.97438 * 20 18 17 23 23 H 1.48492 * 109.47198 * 90.00290 * 22 20 18 24 24 H 1.48505 * 109.47005 * 210.00012 * 22 20 18 25 25 H 1.48494 * 109.47311 * 329.99942 * 22 20 18 26 26 C 1.47066 * 136.06263 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47173 * 300.00000 * 1 2 3 28 28 H 1.09006 * 109.46940 * 60.00377 * 1 2 3 29 29 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46397 * 300.00278 * 3 2 1 32 32 H 1.08996 * 109.46866 * 59.99436 * 3 2 1 33 33 H 1.09002 * 109.47068 * 299.99434 * 4 2 1 34 34 H 1.08992 * 109.47463 * 59.99805 * 4 2 1 35 35 H 1.09005 * 109.47649 * 180.02562 * 4 2 1 36 36 H 1.09007 * 113.46858 * 267.91303 * 9 8 6 37 37 H 1.08993 * 113.47208 * 38.35639 * 9 8 6 38 38 H 0.96696 * 113.99817 * 273.68776 * 11 10 9 39 39 H 1.09003 * 109.47151 * 206.40104 * 12 10 9 40 40 H 1.08997 * 109.47141 * 326.39972 * 12 10 9 41 41 H 1.09003 * 109.47234 * 300.00112 * 13 12 10 42 42 H 1.08997 * 109.47081 * 59.99995 * 13 12 10 43 43 H 0.96998 * 120.00166 * 0.02562 * 14 13 12 44 44 H 1.08999 * 109.47478 * 299.99797 * 17 15 14 45 45 H 1.08997 * 109.47356 * 59.99974 * 17 15 14 46 46 H 0.96996 * 119.99757 * 179.97438 * 21 20 18 47 47 H 1.09005 * 113.46156 * 321.64401 * 26 8 6 48 48 H 1.08994 * 113.46837 * 92.02042 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6654 2.4172 9 6 2.8968 -2.3876 3.5994 10 6 2.1088 -3.4764 4.3410 11 8 0.9147 -3.0126 4.9744 12 6 2.9657 -4.3663 5.2436 13 6 3.1081 -3.7111 6.6188 14 7 3.9291 -4.5629 7.4829 15 6 4.1911 -4.1843 8.7496 16 8 3.7469 -3.1387 9.1742 17 6 5.0361 -5.0603 9.6382 18 6 5.1763 -4.4150 10.9929 19 1 4.7007 -3.4657 11.1907 20 6 5.9117 -5.0365 11.9798 21 7 6.0345 -4.4731 13.1618 22 14 6.7337 -6.6787 11.6379 23 1 8.1021 -6.4469 11.1100 24 1 6.8149 -7.4630 12.8963 25 1 5.9375 -7.4317 10.6359 26 6 1.8956 -4.0342 2.9268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.9494 -2.6334 3.4586 37 1 2.7478 -1.3887 4.0093 38 1 1.0527 -2.6619 5.8649 39 1 2.4882 -5.3400 5.3527 40 1 3.9521 -4.4933 4.7977 41 1 3.5856 -2.7373 6.5097 42 1 2.1216 -3.5840 7.0647 43 1 4.2847 -5.3990 7.1432 44 1 4.5592 -6.0343 9.7479 45 1 6.0224 -5.1869 9.1919 46 1 6.5515 -4.9105 13.8562 47 1 0.8952 -4.4355 2.7645 48 1 2.6811 -4.7184 2.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:28 Heat of formation + Delta-G solvation = -126.860437 kcal Electronic energy + Delta-G solvation = -27997.953772 eV Core-core repulsion = 23861.883478 eV Total energy + Delta-G solvation = -4136.070294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37896 -40.25495 -38.82712 -37.13434 -35.80561 -34.64319 -34.31409 -32.87989 -31.46441 -29.78721 -28.32384 -27.76724 -27.71941 -26.61529 -24.41148 -22.77448 -21.87930 -20.76591 -19.83430 -19.62526 -18.12864 -17.30879 -17.01279 -16.79317 -16.57971 -16.16848 -15.91431 -15.38079 -15.19343 -15.08240 -14.72214 -14.33173 -14.29029 -14.05939 -13.89420 -13.47582 -13.28740 -13.06384 -12.84547 -12.54195 -12.34576 -12.24461 -12.21413 -12.20776 -12.09825 -11.89348 -11.79250 -11.67598 -11.35164 -11.14951 -10.84054 -10.69260 -10.60317 -10.45543 -10.19916 -10.01738 -9.30600 -9.19570 -8.88541 -8.70870 -8.60306 -6.06509 -4.06570 1.61844 2.56211 3.23185 3.28106 3.29040 3.32216 3.50869 3.51081 3.59560 3.78655 4.35340 4.37122 4.38546 4.41099 4.54153 4.54955 4.75014 4.87108 4.95053 5.03109 5.08860 5.11184 5.18233 5.23883 5.24639 5.27214 5.32944 5.36272 5.39851 5.50087 5.50243 5.64416 5.71309 5.76150 5.92832 5.97690 6.08239 6.18437 6.55453 6.81839 6.86561 7.21953 7.32841 7.49537 8.02546 8.03211 8.51888 9.01312 9.13965 9.51535 11.06486 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.029481 B = 0.001847 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.535619 B =15157.936183 C =15422.442105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.360 6.360 6 C 0.685 3.315 7 O -0.568 6.568 8 N -0.629 5.629 9 C 0.076 3.924 10 C 0.103 3.897 11 O -0.531 6.531 12 C -0.145 4.145 13 C 0.115 3.885 14 N -0.749 5.749 15 C 0.521 3.479 16 O -0.531 6.531 17 C -0.029 4.029 18 C -0.514 4.514 19 H 0.092 0.908 20 C 0.068 3.932 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.141 3.859 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.389 0.611 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.396 0.604 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.264 0.736 47 H 0.092 0.908 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 3.925 -29.096 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.442 3.558 7 O -0.458 6.458 8 N -0.371 5.371 9 C -0.047 4.047 10 C 0.059 3.941 11 O -0.339 6.339 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.405 5.405 15 C 0.310 3.690 16 O -0.405 6.405 17 C -0.069 4.069 18 C -0.552 4.552 19 H 0.110 0.890 20 C -0.134 4.134 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.191 1.191 26 C 0.019 3.981 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.240 0.760 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.230 0.770 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.932 4.556 -29.649 31.028 hybrid contribution 0.966 -1.041 0.152 1.429 sum -6.966 3.515 -29.497 30.511 Atomic orbital electron populations 1.22520 0.93904 1.05083 1.02568 1.22111 0.94493 0.91563 0.81990 1.21862 1.02282 0.92400 1.03227 1.22516 1.01545 1.03450 0.96512 1.86320 1.71311 1.23370 1.46478 1.17164 0.78518 0.80340 0.79785 1.90901 1.41766 1.70774 1.42321 1.47831 1.53350 1.14340 1.21556 1.23898 0.96093 1.01765 0.82956 1.22227 0.86234 0.93893 0.91711 1.86512 1.29569 1.82883 1.34928 1.22227 1.00862 1.00087 0.95234 1.21136 0.96205 0.94812 0.88797 1.46213 1.55430 1.25170 1.13652 1.21439 0.79975 0.87050 0.80500 1.90592 1.51441 1.24866 1.73626 1.19682 0.94991 0.96069 0.96174 1.20997 1.32564 1.08688 0.92986 0.89003 1.24993 0.96017 0.97372 0.94984 1.69895 1.40981 1.39037 1.03581 0.86867 0.80243 0.84547 0.78050 1.20170 1.21134 1.19137 1.23085 1.04168 0.83384 0.87427 0.92048 0.91090 0.89435 0.91440 0.90047 0.91362 0.89479 0.91043 0.92177 0.88343 0.89293 0.76006 0.89324 0.89251 0.91636 0.91745 0.77025 0.93577 0.94025 0.92566 0.88982 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.14 1.23 1.13 -90.62 -0.10 1.12 16 3 C -0.14 -0.91 8.85 37.16 0.33 -0.58 16 4 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 5 O -0.36 -4.14 9.91 -40.30 -0.40 -4.54 16 6 C 0.69 8.61 8.26 54.06 0.45 9.06 16 7 O -0.57 -8.16 12.66 -19.28 -0.24 -8.40 16 8 N -0.63 -6.56 3.69 -191.05 -0.70 -7.27 16 9 C 0.08 0.60 8.07 -8.51 -0.07 0.54 16 10 C 0.10 0.78 1.66 -90.10 -0.15 0.63 16 11 O -0.53 -5.05 13.51 -35.23 -0.48 -5.53 16 12 C -0.15 -0.96 5.12 -26.73 -0.14 -1.10 16 13 C 0.11 1.21 5.12 -4.04 -0.02 1.19 16 14 N -0.75 -10.25 5.56 -60.29 -0.33 -10.59 16 15 C 0.52 10.59 7.82 -10.99 -0.09 10.50 16 16 O -0.53 -13.01 15.46 5.55 0.09 -12.92 16 17 C -0.03 -0.66 4.53 -29.03 -0.13 -0.79 16 18 C -0.51 -14.68 9.48 -34.44 -0.33 -15.01 16 19 H 0.09 2.99 7.00 -52.48 -0.37 2.63 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 22 Si 0.88 20.35 27.47 -169.99 -4.67 15.69 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 26 C 0.14 1.13 8.04 -8.50 -0.07 1.06 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.39 2.90 6.93 45.56 0.32 3.22 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.45 7.89 -51.93 -0.41 0.04 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.72 6.71 -51.93 -0.35 0.37 16 43 H 0.40 4.19 8.47 -40.82 -0.35 3.85 16 44 H 0.05 0.98 7.20 -51.93 -0.37 0.60 16 45 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -37.50 390.70 -7.05 -44.55 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.18 Total: 3.90 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 0.21 Total: 5.89 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.27 Total: -44.52 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.03 Total: -31.39 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.50 -7.05 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.309 kcal (2) G-P(sol) polarization free energy of solvation -37.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds