Wall clock time and date at job start Tue Mar 31 2020 16:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00015 * 2 1 4 4 H 1.48492 * 109.47320 * 239.99589 * 3 2 1 5 5 H 1.48502 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47172 * 119.99200 * 3 2 1 7 7 C 1.37882 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46986 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99893 * 179.97438 * 13 12 11 16 16 C 1.39925 * 119.99924 * 184.36935 * 15 13 12 17 17 C 1.38902 * 120.05898 * 325.40278 * 16 15 13 18 18 C 1.38093 * 119.92015 * 180.02562 * 17 16 15 19 19 C 1.38304 * 120.08158 * 0.03010 * 18 17 16 20 20 C 1.38199 * 120.18062 * 359.95372 * 19 18 17 21 21 C 1.38359 * 120.00744 * 0.02562 * 20 19 18 22 22 C 1.51168 * 108.28263 * 180.02562 * 21 20 19 23 23 N 1.48060 * 105.66640 * 17.49217 * 22 21 20 24 24 C 1.46902 * 110.99698 * 91.76639 * 23 22 21 25 25 C 1.53005 * 117.49999 * 133.29270 * 24 23 22 26 26 C 1.53006 * 117.49810 * 64.66953 * 24 23 22 27 27 C 1.48046 * 103.87470 * 332.41372 * 23 22 21 28 28 H 0.97001 * 120.00235 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47398 * 59.99601 * 9 7 2 30 30 H 1.09002 * 109.46988 * 299.99571 * 9 7 2 31 31 H 1.09001 * 109.46873 * 60.00310 * 10 9 7 32 32 H 1.08996 * 109.47067 * 300.00007 * 10 9 7 33 33 H 1.08994 * 109.46809 * 59.99775 * 11 10 9 34 34 H 1.09006 * 109.46763 * 300.00035 * 11 10 9 35 35 H 1.08996 * 109.47440 * 59.99624 * 12 11 10 36 36 H 1.09002 * 109.46845 * 299.99656 * 12 11 10 37 37 H 0.97001 * 120.00441 * 4.37733 * 15 13 12 38 38 H 1.08003 * 120.03901 * 0.04338 * 17 16 15 39 39 H 1.08006 * 119.95626 * 180.02562 * 18 17 16 40 40 H 1.08009 * 119.90919 * 179.97438 * 19 18 17 41 41 H 1.08994 * 110.21009 * 136.54278 * 22 21 20 42 42 H 1.09002 * 110.21520 * 258.44638 * 22 21 20 43 43 H 1.09001 * 115.55298 * 279.00535 * 24 23 22 44 44 H 1.09001 * 117.49806 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49632 * 145.02053 * 25 24 23 46 46 H 1.08996 * 117.49773 * 214.97578 * 26 24 23 47 47 H 1.08996 * 117.49789 * 0.02562 * 26 24 23 48 48 H 1.08993 * 110.20801 * 268.54073 * 27 23 22 49 49 H 1.09001 * 110.20685 * 146.64304 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 6 2.4746 -6.1500 0.0044 13 6 1.7212 -7.4551 0.0044 14 8 0.5083 -7.4552 0.0035 15 7 2.3951 -8.6222 0.0054 16 6 1.6986 -9.8323 -0.0869 17 6 0.4509 -9.9642 0.5093 18 6 -0.2337 -11.1599 0.4168 19 6 0.3217 -12.2256 -0.2678 20 6 1.5626 -12.0984 -0.8626 21 6 2.2533 -10.9028 -0.7738 22 6 3.5643 -11.0566 -1.5105 23 7 3.3987 -12.2455 -2.3773 24 6 2.9069 -11.8627 -3.7076 25 6 3.6093 -12.4719 -4.9227 26 6 3.8213 -10.9967 -4.5765 27 6 2.4010 -13.0715 -1.6603 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8713 -3.6039 0.8923 32 1 2.8727 -3.6047 -0.8877 33 1 0.8541 -5.0455 -0.8877 34 1 0.8533 -5.0442 0.8923 35 1 3.1006 -6.0914 0.8948 36 1 3.1020 -6.0931 -0.8852 37 1 3.3629 -8.6235 0.0703 38 1 0.0167 -9.1325 1.0442 39 1 -1.2040 -11.2630 0.8798 40 1 -0.2160 -13.1597 -0.3380 41 1 3.7612 -10.1728 -2.1172 42 1 4.3775 -11.2171 -0.8027 43 1 1.8330 -11.6910 -3.7803 44 1 4.4360 -13.1570 -4.7351 45 1 2.9974 -12.7012 -5.7951 46 1 3.3488 -10.2556 -5.2212 47 1 4.7878 -10.7113 -4.1613 48 1 2.9022 -13.7721 -0.9925 49 1 1.7766 -13.6105 -2.3727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153349321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:52 Heat of formation + Delta-G solvation = 12.309660 kcal Electronic energy + Delta-G solvation = -26751.504623 eV Core-core repulsion = 23064.611212 eV Total energy + Delta-G solvation = -3686.893412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25603 -39.88430 -37.95222 -35.63090 -34.98424 -34.77895 -32.67655 -30.84199 -30.12930 -29.52896 -27.72126 -25.75092 -24.53386 -23.02424 -22.76843 -21.77594 -21.53730 -20.68584 -20.03801 -20.02011 -17.83023 -16.94759 -16.75663 -16.18841 -16.14717 -15.96890 -15.55157 -15.07631 -14.85274 -14.47345 -14.25124 -14.00261 -13.78745 -13.53483 -13.29036 -13.00427 -12.66139 -12.52646 -12.39375 -12.05483 -11.87932 -11.85532 -11.69970 -11.64051 -11.50576 -10.99338 -10.89066 -10.61948 -10.57309 -10.55416 -10.46461 -10.44696 -9.85048 -9.63990 -9.25598 -9.18859 -9.01764 -8.83050 -8.31580 -8.31374 -5.96266 -3.98987 1.01106 1.08275 2.53129 2.89410 3.26440 3.34498 3.38978 3.41092 3.42783 3.49932 4.06488 4.29067 4.47691 4.55050 4.60255 4.64010 4.76072 4.83698 4.86740 5.02397 5.08900 5.19691 5.23118 5.27009 5.29331 5.33178 5.38970 5.39715 5.41179 5.48347 5.58997 5.68126 5.77759 5.79767 5.98961 6.02511 6.08009 6.20215 6.24067 6.31311 6.34731 6.49534 6.58968 6.79146 6.79962 6.96902 7.15829 7.22051 7.72123 7.87797 8.03090 8.04943 8.46281 9.08429 9.64634 11.14989 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.001998 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.897160 B =14013.223553 C =15108.380470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.514 6.514 15 N -0.681 5.681 16 C 0.175 3.825 17 C -0.120 4.120 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.157 4.157 22 C 0.083 3.917 23 N -0.472 5.472 24 C -0.012 4.012 25 C -0.159 4.159 26 C -0.172 4.172 27 C 0.083 3.917 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.410 0.590 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.423 -30.816 -3.905 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.388 6.388 15 N -0.326 5.326 16 C 0.080 3.920 17 C -0.140 4.140 18 C -0.118 4.118 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.161 4.161 22 C -0.045 4.045 23 N -0.192 5.192 24 C -0.121 4.121 25 C -0.197 4.197 26 C -0.209 4.209 27 C -0.045 4.045 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.245 0.755 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.939 -30.893 -4.041 31.919 hybrid contribution 0.040 1.411 0.196 1.425 sum 6.979 -29.482 -3.845 30.539 Atomic orbital electron populations 1.69960 1.06051 1.26649 1.50782 1.25045 0.94853 0.99247 0.95440 0.86665 0.79571 0.83227 0.78553 1.20277 1.21317 1.20279 1.21235 0.92937 0.91186 1.50603 0.92800 1.19090 0.94041 0.91254 0.97315 1.21651 0.99100 0.93887 1.00138 1.21474 0.96982 0.92658 1.03070 1.21826 1.00201 0.91311 1.04368 1.21359 0.88621 0.85367 0.74524 1.90705 1.14135 1.87223 1.46736 1.43728 1.10748 1.04312 1.73819 1.17220 0.93455 0.84688 0.96669 1.21354 0.94372 0.98584 0.99730 1.21034 0.99805 0.92360 0.98565 1.20451 0.94512 0.99249 0.99484 1.20908 0.95120 0.95427 0.99867 1.20822 0.98974 0.94730 1.01617 1.21663 0.93927 0.93853 0.95019 1.64986 1.39744 1.14020 1.00499 1.22682 0.96134 1.05735 0.87525 1.23045 1.03117 0.96177 0.97318 1.23055 1.01183 0.94189 1.02471 1.21722 0.91671 0.95015 0.96099 0.92970 0.96600 0.96591 0.93403 0.93420 0.91717 0.91682 0.88712 0.88757 0.75459 0.83791 0.85354 0.86070 0.90003 0.88661 0.89046 0.88058 0.88694 0.88475 0.88170 0.88271 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.71 5.70 -27.89 -0.16 -1.87 16 13 C 0.51 6.86 7.67 -10.99 -0.08 6.77 16 14 O -0.51 -8.89 13.39 5.55 0.07 -8.81 16 15 N -0.68 -7.09 5.31 -9.88 -0.05 -7.15 16 16 C 0.17 2.01 6.30 -83.72 -0.53 1.49 16 17 C -0.12 -1.49 8.70 -39.39 -0.34 -1.83 16 18 C -0.10 -1.02 10.04 -39.61 -0.40 -1.42 16 19 C -0.12 -1.08 10.04 -39.57 -0.40 -1.48 16 20 C -0.11 -1.04 6.20 -104.35 -0.65 -1.68 16 21 C -0.16 -1.57 6.14 -104.15 -0.64 -2.21 16 22 C 0.08 0.67 6.52 -4.11 -0.03 0.65 16 23 N -0.47 -3.81 5.66 -226.93 -1.28 -5.10 16 24 C -0.01 -0.09 4.82 -67.71 -0.33 -0.42 16 25 C -0.16 -1.06 10.46 -26.72 -0.28 -1.34 16 26 C -0.17 -1.23 9.55 -26.72 -0.26 -1.49 16 27 C 0.08 0.62 6.61 -4.10 -0.03 0.59 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.41 2.93 8.82 -40.82 -0.36 2.57 16 38 H 0.14 2.02 6.19 -52.48 -0.33 1.69 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.08 0.66 7.10 -51.93 -0.37 0.29 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 0.56 7.80 -51.93 -0.41 0.15 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -33.69 400.48 -12.61 -46.30 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.18 Total: 0.50 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -4.92 Total: -21.88 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.60 Total: -38.98 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.69 -12.61 -46.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153349321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.609 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds