Wall clock time and date at job start Tue Mar 31 2020 15:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 C 1.53001 * 109.46767 * 240.00605 * 2 1 3 5 5 O 1.45193 * 109.47355 * 120.00262 * 2 1 3 6 6 C 1.34639 * 116.99983 * 60.00289 * 5 2 1 7 7 O 1.21509 * 120.00249 * 359.97438 * 6 5 2 8 8 N 1.34781 * 120.00014 * 179.97438 * 6 5 2 9 9 C 1.46495 * 120.00052 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47322 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.87278 * 304.90220 * 10 9 8 12 12 O 1.43749 * 110.00159 * 65.98689 * 10 9 8 13 13 C 1.44383 * 106.97514 * 146.00643 * 12 10 9 14 14 C 1.54992 * 103.49234 * 319.94382 * 13 12 10 15 15 C 1.54096 * 109.88121 * 183.89390 * 10 9 8 16 16 H 1.09004 * 110.49090 * 119.58842 * 15 10 9 17 17 C 1.50700 * 110.48705 * 357.07283 * 15 10 9 18 18 O 1.21284 * 119.99915 * 273.87628 * 17 15 10 19 19 N 1.34773 * 119.99935 * 93.88478 * 17 15 10 20 20 C 1.46507 * 120.00014 * 180.02562 * 19 17 15 21 21 C 1.50704 * 109.46928 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00233 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99702 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99997 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00087 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47290 * 59.99835 * 25 23 21 27 27 H 1.48502 * 109.47579 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47107 * 299.99879 * 25 23 21 29 29 H 1.08998 * 109.46991 * 299.99336 * 1 2 3 30 30 H 1.08992 * 109.47637 * 59.99865 * 1 2 3 31 31 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46822 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47545 * 300.00044 * 3 2 1 34 34 H 1.08998 * 109.46776 * 60.00532 * 3 2 1 35 35 H 1.08998 * 109.46997 * 299.99244 * 4 2 1 36 36 H 1.09001 * 109.47546 * 60.00012 * 4 2 1 37 37 H 1.09004 * 109.46844 * 179.97438 * 4 2 1 38 38 H 0.96997 * 119.99644 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47305 * 59.99950 * 9 8 6 40 40 H 1.09010 * 109.47414 * 300.00431 * 9 8 6 41 41 H 1.09001 * 110.61506 * 78.44042 * 13 12 10 42 42 H 1.08999 * 110.62131 * 201.28153 * 13 12 10 43 43 H 1.08999 * 110.90808 * 278.82268 * 14 13 12 44 44 H 1.09001 * 110.91292 * 155.21784 * 14 13 12 45 45 H 0.96998 * 120.00080 * 0.27021 * 19 17 15 46 46 H 1.09000 * 109.47062 * 299.99375 * 20 19 17 47 47 H 1.08996 * 109.46856 * 59.99567 * 20 19 17 48 48 H 0.97001 * 120.00072 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3381 7 8 0.9510 -2.5095 0.5039 8 7 2.0682 -2.6658 2.4164 9 6 1.6742 -4.0670 2.5829 10 6 2.2745 -4.6151 3.8791 11 1 3.3547 -4.4700 3.8775 12 8 1.6932 -3.9466 5.0112 13 6 1.6138 -4.9162 6.0781 14 6 1.1774 -6.2154 5.3543 15 6 1.9474 -6.1148 4.0149 16 1 2.8641 -6.7032 4.0544 17 6 1.0783 -6.5708 2.8714 18 8 -0.1267 -6.4514 2.9404 19 7 1.6400 -7.1113 1.7720 20 6 0.7952 -7.5541 0.6600 21 6 1.6625 -8.1155 -0.4372 22 1 2.7356 -8.1396 -0.3183 23 6 1.0859 -8.5983 -1.5928 24 7 -0.2210 -8.5694 -1.7373 25 14 2.1608 -9.2934 -2.9531 26 1 2.9367 -10.4466 -2.4305 27 1 1.3045 -9.7424 -4.0803 28 1 3.0960 -8.2432 -3.4305 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9562 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2496 38 1 2.6284 -2.2371 3.0822 39 1 2.0399 -4.6501 1.7377 40 1 0.5873 -4.1359 2.6286 41 1 2.5875 -5.0483 6.5500 42 1 0.8690 -4.6159 6.8151 43 1 0.1008 -6.2232 5.1844 44 1 1.4876 -7.0966 5.9159 45 1 2.6035 -7.2105 1.7184 46 1 0.1079 -8.3242 1.0102 47 1 0.2267 -6.7071 0.2760 48 1 -0.6267 -8.9087 -2.5505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:24 Heat of formation + Delta-G solvation = -171.767392 kcal Electronic energy + Delta-G solvation = -29532.806615 eV Core-core repulsion = 25394.789010 eV Total energy + Delta-G solvation = -4138.017606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77354 -40.28175 -38.04930 -37.26094 -34.75892 -34.24170 -33.88359 -32.55094 -32.06048 -30.28589 -27.46855 -27.41684 -27.36114 -25.84371 -23.26048 -22.65123 -21.72263 -21.47442 -20.02955 -19.39476 -18.16589 -17.30224 -16.81435 -16.43207 -16.19366 -15.89011 -15.64445 -15.36728 -15.01005 -14.83668 -14.39379 -14.37182 -14.03643 -13.89047 -13.36797 -13.19337 -12.96430 -12.59265 -12.45444 -12.17250 -12.08592 -11.96032 -11.91317 -11.89626 -11.87418 -11.52823 -11.38377 -11.27890 -11.20649 -10.98609 -10.91290 -10.83017 -10.32115 -10.31152 -9.90973 -9.88412 -9.40295 -9.11896 -9.04342 -8.71333 -7.91717 -6.14100 -4.21302 2.23436 3.03298 3.12706 3.26683 3.31524 3.32801 3.65332 3.88871 4.19807 4.35018 4.40930 4.68739 4.72175 4.74468 4.84549 4.87644 5.02233 5.06627 5.19493 5.22195 5.34631 5.38811 5.47116 5.48485 5.55315 5.64484 5.65070 5.70099 5.70882 5.82801 5.85543 5.92009 6.05694 6.15019 6.25724 6.33518 6.48193 6.61130 6.71406 7.30008 7.36661 7.53414 7.54402 7.64995 7.98375 8.55608 8.56059 8.76096 9.01845 9.44729 10.96028 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.007546 B = 0.004422 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3709.878365 B = 6330.534115 C = 9361.573297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.645 3.355 7 O -0.554 6.554 8 N -0.704 5.704 9 C 0.127 3.873 10 C 0.085 3.915 11 H 0.084 0.916 12 O -0.366 6.366 13 C 0.049 3.951 14 C -0.142 4.142 15 C -0.141 4.141 16 H 0.104 0.896 17 C 0.504 3.496 18 O -0.544 6.544 19 N -0.708 5.708 20 C 0.250 3.750 21 C -0.545 4.545 22 H 0.062 0.938 23 C 0.065 3.935 24 N -0.884 5.884 25 Si 0.903 3.097 26 H -0.276 1.276 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.390 0.610 46 H 0.027 0.973 47 H 0.030 0.970 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 14.873 11.445 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.284 6.284 6 C 0.398 3.602 7 O -0.442 6.442 8 N -0.364 5.364 9 C 0.005 3.995 10 C 0.026 3.974 11 H 0.102 0.898 12 O -0.286 6.286 13 C -0.027 4.027 14 C -0.180 4.180 15 C -0.163 4.163 16 H 0.123 0.877 17 C 0.288 3.712 18 O -0.423 6.423 19 N -0.356 5.356 20 C 0.129 3.871 21 C -0.583 4.583 22 H 0.080 0.920 23 C -0.139 4.139 24 N -0.521 5.521 25 Si 0.730 3.270 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.239 0.761 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.223 0.777 46 H 0.045 0.955 47 H 0.048 0.952 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.064 14.901 10.834 19.731 hybrid contribution 1.333 -0.566 -0.610 1.571 sum 8.396 14.335 10.224 19.507 Atomic orbital electron populations 1.22525 0.94016 1.05429 1.02224 1.22032 0.94406 0.91309 0.82266 1.21847 1.02086 0.92730 1.02935 1.22533 1.01417 1.03981 0.96305 1.86259 1.71823 1.23819 1.46460 1.18073 0.79277 0.80451 0.82444 1.90995 1.40236 1.70076 1.42887 1.44529 1.55744 1.12505 1.23616 1.21863 1.02359 0.79273 0.96000 1.22806 0.97528 0.90118 0.86978 0.89792 1.88917 1.83445 1.34641 1.21548 1.23569 1.00836 0.87760 0.90572 1.23153 1.03201 0.98460 0.93140 1.22750 1.00631 0.96446 0.96501 0.87735 1.19980 0.88743 0.78894 0.83621 1.90687 1.14646 1.56185 1.80733 1.46568 1.11001 1.60222 1.17836 1.19142 0.90386 0.95367 0.82168 1.21152 0.93277 1.42469 1.01388 0.92013 1.24929 0.95087 0.95527 0.98311 1.69963 1.09352 1.45206 1.27556 0.86495 0.80097 0.79325 0.81105 1.20107 1.21056 1.20072 0.92304 0.91229 0.89088 0.91596 0.90253 0.91613 0.88973 0.91230 0.92269 0.76077 0.88890 0.89150 0.92051 0.88637 0.88180 0.89748 0.77720 0.95521 0.95156 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 2 C 0.14 1.69 1.13 -90.62 -0.10 1.59 16 3 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 4 C -0.19 -2.38 8.37 37.16 0.31 -2.07 16 5 O -0.37 -5.24 9.94 -40.32 -0.40 -5.64 16 6 C 0.64 10.67 8.06 54.06 0.44 11.11 16 7 O -0.55 -11.15 11.88 -19.28 -0.23 -11.38 16 8 N -0.70 -10.11 5.53 -65.28 -0.36 -10.47 16 9 C 0.13 2.03 4.19 -4.05 -0.02 2.01 16 10 C 0.08 1.05 3.45 -26.16 -0.09 0.96 16 11 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 12 O -0.37 -4.67 11.16 -35.23 -0.39 -5.06 16 13 C 0.05 0.48 7.72 38.21 0.29 0.78 16 14 C -0.14 -1.66 6.65 -24.72 -0.16 -1.82 16 15 C -0.14 -1.84 3.43 -90.24 -0.31 -2.15 16 16 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 17 C 0.50 9.49 4.77 -10.99 -0.05 9.44 16 18 O -0.54 -12.60 15.06 5.55 0.08 -12.52 16 19 N -0.71 -14.33 5.00 -61.47 -0.31 -14.64 16 20 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 21 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 22 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 23 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 24 N -0.88 -26.33 13.29 55.43 0.74 -25.59 16 25 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 4.67 8.58 -40.82 -0.35 4.32 16 39 H 0.09 1.64 6.98 -51.93 -0.36 1.28 16 40 H 0.09 1.78 7.16 -51.92 -0.37 1.41 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.46 6.90 -51.93 -0.36 1.10 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -34.55 387.48 -7.40 -41.95 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.85 Total: 11.35 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 0.50 Total: 10.13 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.07 Total: -50.70 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.94 Total: -34.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.55 -7.40 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.818 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds