Wall clock time and date at job start Tue Mar 31 2020 15:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47423 * 2 1 4 4 C 1.53006 * 109.46951 * 239.99518 * 2 1 3 5 5 O 1.45207 * 109.46757 * 120.00098 * 2 1 3 6 6 C 1.34628 * 117.00210 * 59.99617 * 5 2 1 7 7 O 1.21517 * 120.00030 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00035 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00139 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.33196 * 52.28236 * 10 9 8 12 12 O 1.44423 * 110.46898 * 289.96512 * 10 9 8 13 13 C 1.44647 * 105.37073 * 200.68993 * 12 10 9 14 14 C 1.54480 * 104.69660 * 40.34481 * 13 12 10 15 15 C 1.54486 * 110.37046 * 174.53094 * 10 9 8 16 16 H 1.09003 * 110.50609 * 261.56510 * 15 10 9 17 17 C 1.50689 * 110.51194 * 24.27441 * 15 10 9 18 18 O 1.21285 * 119.99960 * 79.82729 * 17 15 10 19 19 N 1.34778 * 120.00199 * 259.82614 * 17 15 10 20 20 C 1.46505 * 120.00307 * 180.02562 * 19 17 15 21 21 C 1.50692 * 109.47157 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00130 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99911 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00086 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99925 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46940 * 89.99830 * 25 23 21 27 27 H 1.48503 * 109.47089 * 209.99616 * 25 23 21 28 28 H 1.48499 * 109.47010 * 329.99891 * 25 23 21 29 29 H 1.08996 * 109.46756 * 300.00518 * 1 2 3 30 30 H 1.09003 * 109.46817 * 59.99977 * 1 2 3 31 31 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47180 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47143 * 299.99823 * 3 2 1 34 34 H 1.08995 * 109.47285 * 59.99525 * 3 2 1 35 35 H 1.09001 * 109.46886 * 300.00148 * 4 2 1 36 36 H 1.08995 * 109.46765 * 60.00361 * 4 2 1 37 37 H 1.08999 * 109.46743 * 180.02562 * 4 2 1 38 38 H 0.97005 * 120.00194 * 359.97438 * 8 6 5 39 39 H 1.09001 * 109.47280 * 60.00307 * 9 8 6 40 40 H 1.09003 * 109.47324 * 299.99795 * 9 8 6 41 41 H 1.09000 * 110.33738 * 281.58781 * 13 12 10 42 42 H 1.08999 * 110.50522 * 159.18264 * 13 12 10 43 43 H 1.08996 * 110.51067 * 217.47382 * 14 13 12 44 44 H 1.09002 * 110.50973 * 94.90059 * 14 13 12 45 45 H 0.97002 * 120.00177 * 359.97438 * 19 17 15 46 46 H 1.09005 * 109.47074 * 300.00000 * 20 19 17 47 47 H 1.08995 * 109.47079 * 59.99688 * 20 19 17 48 48 H 0.96996 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0679 -2.6656 2.4168 9 6 1.6746 -4.0671 2.5828 10 6 2.2746 -4.6149 3.8792 11 1 2.0275 -3.9621 4.7164 12 8 3.7068 -4.7523 3.7544 13 6 4.0916 -5.7010 4.7763 14 6 2.9835 -6.7770 4.7493 15 6 1.7624 -6.0479 4.1453 16 1 0.9366 -6.0324 4.8566 17 6 1.3391 -6.7051 2.8570 18 8 2.1732 -7.1824 2.1171 19 7 0.0336 -6.7625 2.5270 20 6 -0.3780 -7.4019 1.2747 21 6 -1.8777 -7.3325 1.1446 22 1 -2.4656 -6.8597 1.9175 23 6 -2.4995 -7.8734 0.0392 24 7 -1.7838 -8.4494 -0.9018 25 14 -4.3586 -7.7879 -0.1218 26 1 -4.7373 -6.5382 -0.8290 27 1 -4.8430 -8.9600 -0.8944 28 1 -4.9735 -7.7975 1.2298 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2490 38 1 2.6281 -2.2370 3.0826 39 1 2.0411 -4.6499 1.7377 40 1 0.5877 -4.1366 2.6281 41 1 4.1248 -5.2148 5.7513 42 1 5.0582 -6.1457 4.5399 43 1 2.7614 -7.1219 5.7591 44 1 3.2795 -7.6142 4.1172 45 1 -0.6336 -6.3812 3.1189 46 1 0.0837 -6.8845 0.4337 47 1 -0.0611 -8.4448 1.2780 48 1 -2.2212 -8.8296 -1.6795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:30 Heat of formation + Delta-G solvation = -172.007384 kcal Electronic energy + Delta-G solvation = -29476.483462 eV Core-core repulsion = 25338.455449 eV Total energy + Delta-G solvation = -4138.028013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76860 -40.25367 -37.93827 -37.29640 -34.81330 -34.19481 -33.91594 -32.51743 -32.02135 -30.29660 -27.49442 -27.41651 -27.38955 -25.88450 -23.25782 -22.64601 -21.67860 -21.41259 -20.06524 -19.42265 -18.18798 -17.40475 -16.71559 -16.43440 -16.16072 -15.85344 -15.63269 -15.44415 -14.96708 -14.80716 -14.41924 -14.39817 -14.01594 -13.91292 -13.39263 -13.16817 -12.99178 -12.61225 -12.44592 -12.20315 -12.02897 -11.94370 -11.93422 -11.87289 -11.79682 -11.54181 -11.42029 -11.30669 -11.19894 -11.00189 -10.92660 -10.84822 -10.35159 -10.28837 -9.94923 -9.88612 -9.37066 -9.11215 -9.04055 -8.70445 -7.89186 -6.12694 -4.19382 2.18943 2.98864 3.16090 3.27562 3.33164 3.35014 3.71176 3.93767 4.14883 4.37051 4.41431 4.65951 4.69446 4.77034 4.84800 4.89979 4.99466 5.03445 5.21301 5.23893 5.33607 5.36419 5.46053 5.49978 5.52060 5.61159 5.62113 5.67926 5.74274 5.77975 5.82696 5.89470 5.99707 6.12046 6.21704 6.30584 6.44658 6.57478 6.69528 7.32295 7.40436 7.49106 7.55193 7.67796 8.00174 8.50821 8.59844 8.79186 9.05997 9.46673 10.97593 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.007524 B = 0.004389 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.702042 B = 6377.359075 C = 9469.451107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.645 3.355 7 O -0.554 6.554 8 N -0.706 5.706 9 C 0.136 3.864 10 C 0.082 3.918 11 H 0.085 0.915 12 O -0.360 6.360 13 C 0.050 3.950 14 C -0.140 4.140 15 C -0.139 4.139 16 H 0.103 0.897 17 C 0.503 3.497 18 O -0.543 6.543 19 N -0.708 5.708 20 C 0.250 3.750 21 C -0.542 4.542 22 H 0.062 0.938 23 C 0.065 3.935 24 N -0.885 5.885 25 Si 0.902 3.098 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.390 0.610 46 H 0.029 0.971 47 H 0.026 0.974 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.721 16.146 11.266 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.243 4.243 5 O -0.283 6.283 6 C 0.398 3.602 7 O -0.442 6.442 8 N -0.365 5.365 9 C 0.014 3.986 10 C 0.023 3.977 11 H 0.103 0.897 12 O -0.279 6.279 13 C -0.027 4.027 14 C -0.178 4.178 15 C -0.162 4.162 16 H 0.122 0.878 17 C 0.287 3.713 18 O -0.421 6.421 19 N -0.356 5.356 20 C 0.130 3.870 21 C -0.580 4.580 22 H 0.080 0.920 23 C -0.139 4.139 24 N -0.522 5.522 25 Si 0.730 3.270 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.222 0.778 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.049 15.578 9.872 20.543 hybrid contribution -1.299 0.218 0.526 1.418 sum 7.750 15.797 10.397 20.438 Atomic orbital electron populations 1.22529 0.93936 1.05465 1.02255 1.22043 0.94421 0.91307 0.82237 1.21847 1.02125 0.92697 1.02943 1.22532 1.01458 1.03928 0.96340 1.86260 1.71786 1.23819 1.46475 1.18067 0.79286 0.80476 0.82378 1.91002 1.40434 1.70092 1.42623 1.44540 1.55729 1.12308 1.23940 1.21620 1.00166 0.79158 0.97705 1.23057 0.82586 0.94723 0.97296 0.89724 1.89233 1.19993 1.63242 1.55451 1.23426 0.98939 0.89083 0.91267 1.22913 0.93239 0.99972 1.01673 1.22727 1.00325 0.95384 0.97761 0.87836 1.20017 0.83614 0.80678 0.87018 1.90690 1.51382 1.47785 1.52290 1.46560 1.05842 1.58009 1.25222 1.19123 0.94840 0.93099 0.79954 1.21189 0.91131 1.39266 1.06463 0.91963 1.24930 0.98846 0.94761 0.95349 1.69970 1.35725 1.37021 1.09477 0.86437 0.84644 0.77740 0.78218 1.20429 1.21042 1.19787 0.92316 0.91203 0.89025 0.91576 0.90233 0.91612 0.89038 0.91199 0.92248 0.76060 0.89101 0.89138 0.92240 0.88758 0.90069 0.88771 0.77778 0.95304 0.95566 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 2 C 0.14 1.64 1.13 -90.62 -0.10 1.54 16 3 C -0.14 -1.19 8.85 37.15 0.33 -0.86 16 4 C -0.19 -2.34 8.37 37.16 0.31 -2.03 16 5 O -0.37 -5.08 9.94 -40.29 -0.40 -5.48 16 6 C 0.65 10.33 8.06 54.05 0.44 10.77 16 7 O -0.55 -10.81 11.88 -19.29 -0.23 -11.04 16 8 N -0.71 -9.75 5.56 -65.28 -0.36 -10.11 16 9 C 0.14 2.09 4.32 -4.04 -0.02 2.07 16 10 C 0.08 1.02 3.23 -25.95 -0.08 0.94 16 11 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 12 O -0.36 -4.94 11.35 -35.23 -0.40 -5.34 16 13 C 0.05 0.52 7.65 37.93 0.29 0.81 16 14 C -0.14 -1.63 6.58 -25.16 -0.17 -1.79 16 15 C -0.14 -1.83 3.42 -90.21 -0.31 -2.14 16 16 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 17 C 0.50 9.63 4.77 -10.99 -0.05 9.58 16 18 O -0.54 -12.84 15.75 5.55 0.09 -12.75 16 19 N -0.71 -14.53 5.35 -61.48 -0.33 -14.85 16 20 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 21 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 22 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 23 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 24 N -0.88 -26.48 13.29 55.43 0.74 -25.75 16 25 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.41 5.88 -51.93 -0.31 1.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.47 5.88 -51.93 -0.31 1.17 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 4.45 8.58 -40.82 -0.35 4.10 16 39 H 0.09 1.81 7.16 -51.93 -0.37 1.43 16 40 H 0.09 1.43 7.86 -51.93 -0.41 1.03 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.35 7.05 -51.93 -0.37 0.98 16 45 H 0.39 6.79 8.30 -40.82 -0.34 6.45 16 46 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -35.20 389.48 -7.44 -42.64 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.90 Total: 10.46 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 0.50 Total: 10.17 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.04 Total: -50.71 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.94 Total: -34.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.20 -7.44 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.365 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds