Wall clock time and date at job start Tue Mar 31 2020 16:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47429 * 2 1 4 4 C 1.86299 * 109.47357 * 240.00178 * 2 1 3 5 5 C 1.90001 * 109.47218 * 119.99934 * 2 1 3 6 6 C 3.07405 * 109.47221 * 120.00073 * 2 1 3 7 7 C 4.50596 * 109.47216 * 120.00057 * 2 1 3 8 8 C 1.40170 * 120.88501 * 265.32682 * 7 6 5 9 9 C 1.37752 * 119.16515 * 180.02562 * 8 7 6 10 10 N 1.32039 * 121.00077 * 0.02562 * 9 8 7 11 11 C 1.32447 * 121.95144 * 359.97438 * 10 9 8 12 12 N 1.39047 * 119.63740 * 179.97438 * 11 10 9 13 13 C 1.46499 * 119.99911 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.41278 * 324.99982 * 13 12 11 15 15 C 1.52965 * 109.41221 * 84.85931 * 13 12 11 16 16 C 1.53088 * 109.47453 * 183.71053 * 15 13 12 17 17 C 1.51273 * 108.49534 * 305.31351 * 16 15 13 18 18 C 1.37879 * 120.85198 * 231.33385 * 17 16 15 19 19 N 1.31512 * 120.00179 * 180.02562 * 18 17 16 20 20 Si 1.86804 * 119.99810 * 0.02692 * 18 17 16 21 21 H 1.48499 * 109.47008 * 89.99758 * 20 18 17 22 22 H 1.48502 * 109.46908 * 209.99973 * 20 18 17 23 23 H 1.48501 * 109.46953 * 329.99674 * 20 18 17 24 24 C 1.51272 * 118.29866 * 51.36007 * 17 16 15 25 25 C 1.52957 * 109.41505 * 205.13959 * 13 12 11 26 26 C 1.38878 * 120.72106 * 0.27010 * 11 10 9 27 27 H 1.09003 * 109.47117 * 299.99802 * 1 2 3 28 28 H 1.09004 * 109.47330 * 59.99726 * 1 2 3 29 29 H 1.09000 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47510 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47088 * 300.00421 * 3 2 1 32 32 H 1.09004 * 109.47203 * 59.99646 * 3 2 1 33 33 H 1.09008 * 109.47057 * 300.00070 * 4 2 1 34 34 H 1.09000 * 109.47494 * 59.99503 * 4 2 1 35 35 H 1.08998 * 109.47319 * 179.97438 * 4 2 1 36 36 H 1.07991 * 120.41424 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.50036 * 179.97438 * 9 8 7 38 38 H 0.96998 * 119.99980 * 359.97438 * 12 11 10 39 39 H 1.09004 * 109.47923 * 303.61303 * 15 13 12 40 40 H 1.08994 * 109.48022 * 63.65533 * 15 13 12 41 41 H 1.09007 * 109.64052 * 185.61992 * 16 15 13 42 42 H 1.08994 * 109.81604 * 65.11712 * 16 15 13 43 43 H 0.97000 * 120.00271 * 180.02562 * 19 18 17 44 44 H 1.09000 * 109.62600 * 188.93231 * 24 17 16 45 45 H 1.09004 * 109.78185 * 68.45957 * 24 17 16 46 46 H 1.09005 * 109.48472 * 296.35156 * 25 13 12 47 47 H 1.09002 * 109.48201 * 56.38570 * 25 13 12 48 48 H 1.08007 * 120.53514 * 179.70625 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4963 -0.8957 1.5514 6 6 2.8877 -1.4491 2.5099 7 6 3.3650 -2.1242 3.6791 8 6 3.1197 -1.6075 4.9588 9 6 3.5958 -2.2857 6.0592 10 7 4.2764 -3.4090 5.9237 11 6 4.5323 -3.9345 4.7351 12 7 5.2542 -5.1197 4.6483 13 6 5.5412 -5.7083 3.3378 14 1 4.7004 -5.5282 2.6678 15 6 6.8014 -5.0650 2.7566 16 6 7.0505 -5.6116 1.3485 17 6 7.1004 -7.1218 1.4219 18 6 8.1542 -7.8219 0.8737 19 7 8.1804 -9.1347 0.9467 20 14 9.5448 -6.9055 0.0275 21 1 10.6004 -6.5813 1.0204 22 1 10.1186 -7.7577 -1.0448 23 1 9.0207 -5.6492 -0.5659 24 6 5.9643 -7.8442 2.1116 25 6 5.7541 -7.2150 3.4927 26 6 4.0926 -3.3115 3.5744 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5212 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8778 -1.5214 36 1 2.5644 -0.6893 5.0804 37 1 3.4102 -1.8922 7.0477 38 1 5.5678 -5.5568 5.4555 39 1 6.6679 -3.9843 2.7067 40 1 7.6548 -5.2971 3.3935 41 1 7.9999 -5.2319 0.9707 42 1 6.2429 -5.3039 0.6844 43 1 8.9219 -9.6272 0.5614 44 1 6.2157 -8.8988 2.2240 45 1 5.0528 -7.7460 1.5219 46 1 6.6325 -7.3962 4.1123 47 1 4.8780 -7.6593 3.9651 48 1 4.3070 -3.7402 2.6065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:24 Heat of formation + Delta-G solvation = 26.666887 kcal Electronic energy + Delta-G solvation = -24504.732340 eV Core-core repulsion = 21181.667952 eV Total energy + Delta-G solvation = -3323.064388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.09917 -37.56029 -34.70394 -33.88884 -31.84705 -30.70722 -29.96888 -29.20623 -28.93085 -27.79919 -27.73044 -26.89105 -23.99856 -23.02783 -21.64164 -21.34711 -19.51196 -18.65866 -16.76203 -16.16229 -15.84336 -15.52415 -14.59649 -14.48542 -14.23641 -14.17202 -13.63567 -13.51724 -13.36629 -13.34105 -13.27269 -12.86001 -12.70681 -12.63796 -12.46491 -12.43797 -12.24040 -11.92152 -11.82236 -11.64182 -11.46075 -11.11949 -10.94373 -10.82345 -10.74155 -10.34893 -10.25165 -10.09746 -9.95771 -9.90524 -9.50512 -9.36169 -9.05884 -8.99241 -8.72615 -8.52576 -7.39405 -6.16066 -4.07512 0.95460 1.52013 2.16874 2.36063 2.42537 3.05041 3.15322 3.23272 3.32599 3.33935 3.40616 3.51176 4.21926 4.33683 4.71302 4.83878 5.11313 5.24423 5.30664 5.32287 5.35126 5.37171 5.37380 5.44971 5.47168 5.48176 5.57385 5.77364 5.88017 5.98674 6.05451 6.06642 6.15250 6.25648 6.37648 6.40084 6.51355 6.59915 6.65954 6.78564 6.84674 6.94884 7.02325 7.33562 7.39125 7.57094 7.59186 7.64553 7.73671 7.94316 8.31015 8.39740 8.90014 9.48589 10.93397 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.003167 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.139717 B = 8840.399373 C =10926.553738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.143 2.857 3 C -0.450 4.450 4 C -0.453 4.453 5 C -0.394 4.394 6 C -0.129 4.129 7 C 0.083 3.917 8 C -0.230 4.230 9 C 0.150 3.850 10 N -0.550 5.550 11 C 0.415 3.585 12 N -0.713 5.713 13 C 0.160 3.840 14 H 0.071 0.929 15 C -0.120 4.120 16 C -0.013 4.013 17 C -0.491 4.491 18 C 0.077 3.923 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.014 3.986 25 C -0.113 4.113 26 C -0.217 4.217 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.401 0.599 39 H 0.034 0.966 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.062 0.938 45 H 0.006 0.994 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 18.470 0.756 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.329 2.671 3 C -0.558 4.558 4 C -0.561 4.561 5 C -0.429 4.429 6 C -0.129 4.129 7 C 0.075 3.925 8 C -0.253 4.253 9 C -0.007 4.007 10 N -0.269 5.269 11 C 0.178 3.822 12 N -0.342 5.342 13 C 0.057 3.943 14 H 0.089 0.911 15 C -0.159 4.159 16 C -0.052 4.052 17 C -0.510 4.510 18 C -0.126 4.126 19 N -0.526 5.526 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.024 4.024 25 C -0.152 4.152 26 C -0.242 4.242 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.236 0.764 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.024 0.976 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.424 17.685 1.349 21.655 hybrid contribution 0.843 0.499 -0.464 1.084 sum -11.581 18.184 0.884 21.577 Atomic orbital electron populations 1.26096 1.20099 1.04976 1.04646 0.76997 0.65881 0.64605 0.59633 1.26099 1.06814 1.18277 1.04644 1.26120 1.06977 1.08584 1.14438 1.35974 1.00447 1.01888 1.04637 1.20906 0.99181 0.97996 0.94836 1.16171 0.94163 0.92430 0.89746 1.21718 1.08167 1.03541 0.91903 1.22209 0.91050 0.89122 0.98356 1.67171 1.19947 1.14449 1.25329 1.18308 0.88343 0.87011 0.88504 1.45182 1.56898 1.22118 1.10018 1.21133 0.97458 0.94266 0.81473 0.91105 1.22020 0.96932 0.97000 0.99939 1.19701 0.97170 0.96534 0.91759 1.20015 1.05733 0.89461 1.35812 1.24840 0.97587 0.94710 0.95428 1.69826 1.31935 1.06003 1.44811 0.86664 0.82274 0.79812 0.79657 1.20398 1.21566 1.19174 1.19337 0.95061 0.98477 0.89547 1.21920 0.99294 0.92056 1.01908 1.21575 1.05489 0.97683 0.99447 0.90992 0.90593 0.90823 0.90835 0.90596 0.90992 0.90710 0.90659 0.90725 0.85371 0.82801 0.76383 0.94691 0.92537 0.94962 0.96383 0.92505 0.91992 0.97590 0.92510 0.94406 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -2.71 8.65 101.05 0.87 -1.83 16 2 Si 1.14 7.31 14.26 -169.99 -2.42 4.89 16 3 C -0.45 -2.73 8.65 101.05 0.87 -1.85 16 4 C -0.45 -3.32 8.65 101.05 0.87 -2.45 16 5 C -0.39 -4.78 12.15 29.55 0.36 -4.43 16 6 C -0.13 -1.93 13.31 -38.84 -0.52 -2.45 16 7 C 0.08 1.30 5.75 -106.72 -0.61 0.69 16 8 C -0.23 -3.12 9.85 -39.03 -0.38 -3.51 16 9 C 0.15 2.02 11.16 -17.64 -0.20 1.83 16 10 N -0.55 -8.94 10.38 -12.53 -0.13 -9.07 16 11 C 0.42 7.14 7.63 -155.03 -1.18 5.96 16 12 N -0.71 -12.23 5.24 -54.02 -0.28 -12.52 16 13 C 0.16 3.03 2.04 -67.97 -0.14 2.89 16 14 H 0.07 1.37 6.46 -51.93 -0.34 1.03 16 15 C -0.12 -2.42 5.38 -26.70 -0.14 -2.57 16 16 C -0.01 -0.31 5.59 -27.56 -0.15 -0.46 16 17 C -0.49 -12.58 5.51 -98.92 -0.55 -13.12 16 18 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 19 N -0.89 -25.08 12.73 55.43 0.71 -24.37 16 20 Si 0.89 20.85 27.27 -169.99 -4.64 16.22 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.09 6.46 56.52 0.37 -5.72 16 24 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 25 C -0.11 -2.30 5.40 -26.64 -0.14 -2.44 16 26 C -0.22 -3.69 8.53 -38.82 -0.33 -4.02 16 27 H 0.07 0.43 7.96 -51.93 -0.41 0.01 16 28 H 0.07 0.35 7.96 -51.93 -0.41 -0.06 16 29 H 0.07 0.48 7.96 -51.93 -0.41 0.07 16 30 H 0.07 0.49 7.96 -51.93 -0.41 0.07 16 31 H 0.07 0.36 7.96 -51.93 -0.41 -0.06 16 32 H 0.07 0.43 7.96 -51.93 -0.41 0.02 16 33 H 0.07 0.60 7.96 -51.92 -0.41 0.18 16 34 H 0.07 0.43 7.96 -51.93 -0.41 0.02 16 35 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.40 6.47 8.72 -40.82 -0.36 6.12 16 39 H 0.03 0.67 7.65 -51.93 -0.40 0.27 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 1.63 7.07 -51.93 -0.37 1.27 16 45 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.14 2.42 6.09 -52.48 -0.32 2.10 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -30.39 397.83 -10.28 -40.66 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.88 Total: 3.83 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -1.63 Total: -25.63 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.29 Total: -45.97 kcal Atomic # 14 Polarization: 28.16 SS G_CDS: -7.06 Total: 21.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.39 -10.28 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.331 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds