Wall clock time and date at job start Tue Mar 31 2020 14:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39894 * 109.47300 * 2 1 4 4 F 1.39894 * 109.46926 * 239.99435 * 2 1 3 5 5 C 1.52997 * 109.46757 * 120.00100 * 2 1 3 6 6 C 1.50708 * 115.54922 * 304.46588 * 5 2 1 7 7 O 1.21279 * 119.99731 * 123.69197 * 6 5 2 8 8 N 1.34776 * 119.99505 * 303.69020 * 6 5 2 9 9 C 1.46502 * 119.99650 * 174.64650 * 8 6 5 10 10 C 1.52993 * 109.47279 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47386 * 179.97438 * 10 9 8 12 12 C 1.29454 * 117.69057 * 94.99861 * 11 10 9 13 13 C 1.50326 * 123.64824 * 180.85715 * 12 11 10 14 14 N 1.47007 * 109.16850 * 349.02969 * 13 12 11 15 15 C 1.36938 * 121.37292 * 222.97021 * 14 13 12 16 16 H 1.08004 * 119.99550 * 147.64435 * 15 14 13 17 17 C 1.38806 * 120.00184 * 327.63843 * 15 14 13 18 18 N 1.31625 * 119.99778 * 359.74236 * 17 15 14 19 19 Si 1.86793 * 120.00105 * 179.74032 * 17 15 14 20 20 H 1.48504 * 109.47192 * 60.00429 * 19 17 15 21 21 H 1.48500 * 109.47151 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47231 * 299.99928 * 19 17 15 23 23 C 1.47342 * 117.25168 * 42.94080 * 14 13 12 24 24 C 1.49963 * 117.69367 * 274.74213 * 11 10 9 25 25 C 1.53000 * 117.50230 * 90.13530 * 5 2 1 26 26 C 1.53001 * 117.49898 * 158.79417 * 5 2 1 27 27 H 1.09005 * 109.47167 * 295.32212 * 1 2 3 28 28 H 1.09008 * 109.46916 * 55.30906 * 1 2 3 29 29 H 1.08991 * 109.47805 * 175.31263 * 1 2 3 30 30 H 0.96992 * 120.00505 * 354.92058 * 8 6 5 31 31 H 1.09005 * 109.46815 * 300.00235 * 9 8 6 32 32 H 1.09001 * 109.47011 * 59.99540 * 9 8 6 33 33 H 1.09001 * 109.46976 * 300.00038 * 10 9 8 34 34 H 1.09000 * 109.46898 * 59.99836 * 10 9 8 35 35 H 1.07993 * 118.17787 * 0.88541 * 12 11 10 36 36 H 1.09004 * 109.52032 * 108.93107 * 13 12 11 37 37 H 1.08997 * 109.52415 * 229.11867 * 13 12 11 38 38 H 0.97002 * 119.99680 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.77614 * 57.80889 * 23 14 13 40 40 H 1.08998 * 109.78230 * 178.62432 * 23 14 13 41 41 H 1.08999 * 109.31262 * 281.28695 * 24 11 10 42 42 H 1.09001 * 109.31739 * 40.71353 * 24 11 10 43 43 H 1.09003 * 117.50268 * 215.00486 * 25 5 2 44 44 H 1.09004 * 117.49756 * 0.02562 * 25 5 2 45 45 H 1.09001 * 117.49991 * 359.97438 * 26 5 2 46 46 H 1.09001 * 117.49911 * 144.97345 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2492 6 6 1.5311 -0.1851 2.5626 7 8 0.9563 -0.9213 3.3362 8 7 1.7148 1.1125 2.8772 9 6 1.1195 1.6616 4.0980 10 6 1.4782 3.1440 4.2183 11 6 0.8652 3.7089 5.4737 12 6 1.6017 3.7486 6.5376 13 6 1.1213 4.2666 7.8644 14 7 -0.1733 4.9384 7.6803 15 6 -0.4520 6.1300 8.2948 16 1 -1.0946 6.8501 7.8102 17 6 0.0914 6.4122 9.5405 18 7 0.8704 5.5324 10.1333 19 14 -0.2829 8.0407 10.3755 20 1 -1.7477 8.1634 10.5869 21 1 0.4132 8.0965 11.6860 22 1 0.1887 9.1570 9.5172 23 6 -1.1583 4.2770 6.8067 24 6 -0.5529 4.1910 5.4010 25 6 2.2784 -2.2291 1.1466 26 6 3.4683 -1.2686 1.2154 27 1 -0.3634 0.4396 0.9290 28 1 -0.3633 0.5849 -0.8451 29 1 -0.3634 -1.0241 -0.0840 30 1 2.2379 1.6837 2.2934 31 1 0.0358 1.5519 4.0548 32 1 1.5048 1.1234 4.9640 33 1 2.5619 3.2531 4.2616 34 1 1.0931 3.6823 3.3523 35 1 2.6180 3.3899 6.4679 36 1 1.0045 3.4351 8.5595 37 1 1.8465 4.9762 8.2627 38 1 1.2498 5.7295 11.0041 39 1 -1.3712 3.2761 7.1824 40 1 -2.0766 4.8633 6.7760 41 1 -0.5755 5.1757 4.9340 42 1 -1.1395 3.4964 4.7996 43 1 2.0673 -2.8333 2.0290 44 1 2.0725 -2.7072 0.1889 45 1 4.0446 -1.1152 0.3030 46 1 4.0401 -1.2405 2.1430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161239769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:56 Heat of formation + Delta-G solvation = -81.513048 kcal Electronic energy + Delta-G solvation = -28237.424955 eV Core-core repulsion = 23992.233556 eV Total energy + Delta-G solvation = -4245.191399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.47688 -47.47135 -40.36027 -37.99608 -36.98332 -35.43871 -33.57697 -31.83266 -31.35140 -29.84108 -28.81331 -25.99268 -24.90462 -23.46548 -23.02889 -22.68304 -22.10927 -20.96915 -20.07690 -18.40805 -17.83940 -17.59309 -16.77294 -16.34257 -16.21340 -15.67887 -15.40085 -15.00233 -14.85432 -14.36549 -14.21808 -14.03214 -13.90783 -13.69777 -13.53297 -13.45258 -13.24028 -12.97458 -12.67932 -12.61417 -12.22939 -12.17852 -12.01692 -11.97754 -11.58790 -11.43785 -11.16507 -10.99732 -10.86343 -10.81385 -10.78095 -10.36627 -10.28938 -10.08449 -9.86223 -9.53753 -9.23752 -8.63519 -7.90725 -6.58719 -5.79082 -3.26686 2.09184 2.67505 2.94140 3.04008 3.23324 3.38618 3.43491 3.44341 3.62345 3.77842 4.04646 4.26651 4.41642 4.48805 4.50995 4.95305 5.07284 5.09519 5.10222 5.16664 5.22681 5.28290 5.36679 5.42965 5.43650 5.56337 5.59118 5.64881 5.78465 6.00572 6.03197 6.15390 6.22201 6.28039 6.41205 6.58995 6.82416 6.93636 7.23084 7.28256 7.38227 7.44420 7.77539 7.91252 7.92203 8.46484 9.23974 9.83044 10.46056 11.30909 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002175 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.527080 B =12869.988346 C =13141.688308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.334 3.666 3 F -0.193 7.193 4 F -0.193 7.193 5 C -0.227 4.227 6 C 0.554 3.446 7 O -0.525 6.525 8 N -0.721 5.721 9 C 0.123 3.877 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.146 4.146 13 C 0.197 3.803 14 N -0.596 5.596 15 C -0.249 4.249 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.910 5.910 19 Si 0.906 3.094 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.143 3.857 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.404 0.596 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.255 0.745 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -13.414 -22.026 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.297 3.703 3 F -0.174 7.174 4 F -0.173 7.173 5 C -0.231 4.231 6 C 0.338 3.662 7 O -0.401 6.401 8 N -0.372 5.372 9 C 0.001 3.999 10 C -0.129 4.129 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.072 3.928 14 N -0.319 5.319 15 C -0.379 4.379 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.555 5.555 19 Si 0.736 3.264 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.017 3.983 24 C -0.130 4.130 25 C -0.159 4.159 26 C -0.178 4.178 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.239 0.761 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.528 -13.868 -21.290 25.652 hybrid contribution 0.317 1.269 0.021 1.308 sum 3.845 -12.599 -21.269 25.018 Atomic orbital electron populations 1.22753 0.90541 1.05984 1.05686 1.20068 0.93840 0.74964 0.81413 1.93015 1.90618 1.37187 1.96581 1.93009 1.90622 1.80941 1.52773 1.22499 1.05355 1.01049 0.94188 1.18873 0.79357 0.82305 0.85661 1.90746 1.41686 1.57254 1.50391 1.46141 1.54355 1.10257 1.26493 1.21519 0.98523 0.93987 0.85891 1.20909 1.00536 0.93267 0.98236 1.20209 0.96868 1.03732 0.93738 1.23198 0.97914 0.97799 0.97611 1.19748 0.88309 0.96038 0.88657 1.44043 1.10351 1.22717 1.54828 1.19085 1.28583 0.92811 0.97428 0.91790 1.25265 0.99837 0.98092 0.96094 1.69928 1.34939 1.34547 1.16037 0.86317 0.78086 0.83261 0.78748 1.20857 1.21583 1.20988 1.21008 0.92506 0.95877 0.88933 1.20793 0.92879 0.99481 0.99855 1.23108 0.99350 0.88083 1.05344 1.23162 0.88604 1.00921 1.05129 0.89199 0.89423 0.88777 0.76104 0.91122 0.90984 0.91482 0.91391 0.89179 0.94462 0.89045 0.93481 0.95839 0.92579 0.91986 0.93026 0.86383 0.86901 0.86957 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 9.23 37.16 0.34 -1.06 16 2 C 0.33 2.83 2.09 -26.73 -0.06 2.77 16 3 F -0.19 -1.81 15.65 2.25 0.04 -1.77 16 4 F -0.19 -1.67 15.64 2.25 0.04 -1.64 16 5 C -0.23 -2.01 1.80 -155.66 -0.28 -2.29 16 6 C 0.55 6.47 6.02 -10.98 -0.07 6.41 16 7 O -0.52 -8.00 16.50 5.56 0.09 -7.91 16 8 N -0.72 -7.83 5.43 -60.29 -0.33 -8.16 16 9 C 0.12 1.57 5.66 -4.04 -0.02 1.55 16 10 C -0.09 -1.19 5.32 -27.89 -0.15 -1.34 16 11 C -0.14 -2.49 5.11 -100.99 -0.52 -3.01 16 12 C -0.15 -2.83 9.47 -35.78 -0.34 -3.16 16 13 C 0.20 4.78 5.14 -5.10 -0.03 4.75 16 14 N -0.60 -15.17 3.00 -173.55 -0.52 -15.69 16 15 C -0.25 -6.89 9.66 -15.06 -0.15 -7.04 16 16 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 17 C 0.01 0.15 5.28 -17.43 -0.09 0.06 16 18 N -0.91 -26.33 10.87 55.49 0.60 -25.73 16 19 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.14 3.04 6.59 -3.43 -0.02 3.02 16 24 C -0.09 -1.61 5.95 -28.09 -0.17 -1.77 16 25 C -0.12 -0.90 9.47 -26.69 -0.25 -1.15 16 26 C -0.14 -1.01 9.69 -26.69 -0.26 -1.27 16 27 H 0.09 0.74 7.27 -51.93 -0.38 0.36 16 28 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.40 3.73 7.17 -40.82 -0.29 3.44 16 31 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 34 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.09 1.55 7.73 -52.49 -0.41 1.15 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 2.45 6.56 -51.93 -0.34 2.11 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.12 0.96 7.84 -51.93 -0.41 0.55 16 44 H 0.11 0.67 7.65 -51.93 -0.40 0.27 16 45 H 0.11 0.68 7.91 -51.93 -0.41 0.27 16 46 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -31.27 379.81 -8.65 -39.92 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.22 Total: 2.09 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.05 Total: -3.53 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.24 Total: -49.57 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.27 -8.65 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161239769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.593 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds