Wall clock time and date at job start Tue Mar 31 2020 14:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39894 * 109.47300 * 2 1 4 4 F 1.39894 * 109.46926 * 239.99435 * 2 1 3 5 5 C 1.52997 * 109.46757 * 120.00100 * 2 1 3 6 6 C 1.50708 * 115.54922 * 304.46588 * 5 2 1 7 7 O 1.21279 * 119.99731 * 123.69197 * 6 5 2 8 8 N 1.34776 * 119.99505 * 303.69020 * 6 5 2 9 9 C 1.46502 * 119.99650 * 174.64650 * 8 6 5 10 10 C 1.52993 * 109.47279 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47386 * 179.97438 * 10 9 8 12 12 C 1.29454 * 117.69057 * 94.99861 * 11 10 9 13 13 C 1.50326 * 123.64824 * 180.85715 * 12 11 10 14 14 N 1.47007 * 109.16850 * 349.02969 * 13 12 11 15 15 C 1.36938 * 121.37292 * 222.97021 * 14 13 12 16 16 H 1.08004 * 119.99550 * 147.64435 * 15 14 13 17 17 C 1.38806 * 120.00184 * 327.63843 * 15 14 13 18 18 N 1.31625 * 119.99778 * 359.74236 * 17 15 14 19 19 Si 1.86793 * 120.00105 * 179.74032 * 17 15 14 20 20 H 1.48504 * 109.47192 * 60.00429 * 19 17 15 21 21 H 1.48500 * 109.47151 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47231 * 299.99928 * 19 17 15 23 23 C 1.47342 * 117.25168 * 42.94080 * 14 13 12 24 24 C 1.49963 * 117.69367 * 274.74213 * 11 10 9 25 25 C 1.53000 * 117.50230 * 90.13530 * 5 2 1 26 26 C 1.53001 * 117.49898 * 158.79417 * 5 2 1 27 27 H 1.09005 * 109.47167 * 295.32212 * 1 2 3 28 28 H 1.09008 * 109.46916 * 55.30906 * 1 2 3 29 29 H 1.08991 * 109.47805 * 175.31263 * 1 2 3 30 30 H 0.96992 * 120.00505 * 354.92058 * 8 6 5 31 31 H 1.09005 * 109.46815 * 300.00235 * 9 8 6 32 32 H 1.09001 * 109.47011 * 59.99540 * 9 8 6 33 33 H 1.09001 * 109.46976 * 300.00038 * 10 9 8 34 34 H 1.09000 * 109.46898 * 59.99836 * 10 9 8 35 35 H 1.07993 * 118.17787 * 0.88541 * 12 11 10 36 36 H 1.09004 * 109.52032 * 108.93107 * 13 12 11 37 37 H 1.08997 * 109.52415 * 229.11867 * 13 12 11 38 38 H 0.97002 * 119.99680 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.77614 * 57.80889 * 23 14 13 40 40 H 1.08998 * 109.78230 * 178.62432 * 23 14 13 41 41 H 1.08999 * 109.31262 * 281.28695 * 24 11 10 42 42 H 1.09001 * 109.31739 * 40.71353 * 24 11 10 43 43 H 1.09003 * 117.50268 * 215.00486 * 25 5 2 44 44 H 1.09004 * 117.49756 * 0.02562 * 25 5 2 45 45 H 1.09001 * 117.49991 * 359.97438 * 26 5 2 46 46 H 1.09001 * 117.49911 * 144.97345 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2492 6 6 1.5311 -0.1851 2.5626 7 8 0.9563 -0.9213 3.3362 8 7 1.7148 1.1125 2.8772 9 6 1.1195 1.6616 4.0980 10 6 1.4782 3.1440 4.2183 11 6 0.8652 3.7089 5.4737 12 6 1.6017 3.7486 6.5376 13 6 1.1213 4.2666 7.8644 14 7 -0.1733 4.9384 7.6803 15 6 -0.4520 6.1300 8.2948 16 1 -1.0946 6.8501 7.8102 17 6 0.0914 6.4122 9.5405 18 7 0.8704 5.5324 10.1333 19 14 -0.2829 8.0407 10.3755 20 1 -1.7477 8.1634 10.5869 21 1 0.4132 8.0965 11.6860 22 1 0.1887 9.1570 9.5172 23 6 -1.1583 4.2770 6.8067 24 6 -0.5529 4.1910 5.4010 25 6 2.2784 -2.2291 1.1466 26 6 3.4683 -1.2686 1.2154 27 1 -0.3634 0.4396 0.9290 28 1 -0.3633 0.5849 -0.8451 29 1 -0.3634 -1.0241 -0.0840 30 1 2.2379 1.6837 2.2934 31 1 0.0358 1.5519 4.0548 32 1 1.5048 1.1234 4.9640 33 1 2.5619 3.2531 4.2616 34 1 1.0931 3.6823 3.3523 35 1 2.6180 3.3899 6.4679 36 1 1.0045 3.4351 8.5595 37 1 1.8465 4.9762 8.2627 38 1 1.2498 5.7295 11.0041 39 1 -1.3712 3.2761 7.1824 40 1 -2.0766 4.8633 6.7760 41 1 -0.5755 5.1757 4.9340 42 1 -1.1395 3.4964 4.7996 43 1 2.0673 -2.8333 2.0290 44 1 2.0725 -2.7072 0.1889 45 1 4.0446 -1.1152 0.3030 46 1 4.0401 -1.2405 2.1430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161239769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:55 Heat of formation + Delta-G solvation = -99.320000 kcal Electronic energy + Delta-G solvation = -28238.197123 eV Core-core repulsion = 23992.233556 eV Total energy + Delta-G solvation = -4245.963567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.12820 -48.12696 -41.24552 -39.50737 -37.79826 -36.69703 -35.14484 -33.18005 -32.35689 -31.48767 -30.28615 -27.42803 -25.99034 -24.73105 -24.19031 -23.62528 -23.19598 -22.47228 -20.95538 -19.47773 -19.14065 -18.49999 -17.64393 -17.40421 -17.12691 -16.91509 -16.89307 -16.39861 -15.79495 -15.58134 -15.44390 -15.18351 -15.01063 -14.90737 -14.68793 -14.38405 -14.25871 -14.05866 -13.83249 -13.54183 -13.39229 -13.27372 -13.23494 -12.89410 -12.83801 -12.69217 -12.64112 -12.56445 -12.37106 -12.23116 -11.91050 -11.74064 -11.70967 -11.49996 -11.27441 -11.03083 -10.68348 -10.22070 -9.49158 -8.62208 -7.89044 -5.40481 1.23962 1.40642 1.46159 1.48841 1.55280 1.95800 2.33483 2.49486 2.56065 3.01172 3.11603 3.29399 3.45249 3.53078 3.69980 3.82118 3.87384 3.95154 4.08211 4.09835 4.28216 4.42893 4.53377 4.56188 4.57189 4.58163 4.63898 4.67845 4.82550 4.86501 4.90349 4.91746 4.97191 5.04055 5.06285 5.18618 5.25237 5.30935 5.42724 5.54314 5.61165 5.88034 6.28628 6.37594 6.38658 7.03504 7.15369 7.82122 8.40609 9.18861 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.002175 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.527080 B =12869.988346 C =13141.688308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.335 3.665 3 F -0.198 7.198 4 F -0.192 7.192 5 C -0.237 4.237 6 C 0.555 3.445 7 O -0.565 6.565 8 N -0.711 5.711 9 C 0.132 3.868 10 C -0.080 4.080 11 C -0.121 4.121 12 C -0.174 4.174 13 C 0.208 3.792 14 N -0.617 5.617 15 C -0.263 4.263 16 H 0.068 0.932 17 C -0.050 4.050 18 N -0.940 5.940 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.136 3.864 24 C -0.087 4.087 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.414 0.586 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.002 0.998 37 H 0.055 0.945 38 H 0.250 0.750 39 H 0.018 0.982 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -13.334 -24.955 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.299 3.701 3 F -0.179 7.179 4 F -0.173 7.173 5 C -0.241 4.241 6 C 0.341 3.659 7 O -0.444 6.444 8 N -0.363 5.363 9 C 0.008 3.992 10 C -0.117 4.117 11 C -0.122 4.122 12 C -0.193 4.193 13 C 0.083 3.917 14 N -0.341 5.341 15 C -0.393 4.393 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.586 5.586 19 Si 0.801 3.199 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.201 1.201 23 C 0.011 3.989 24 C -0.126 4.126 25 C -0.154 4.154 26 C -0.168 4.168 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.252 0.748 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.527 -13.779 -24.269 28.130 hybrid contribution 0.263 1.197 0.879 1.508 sum 3.789 -12.582 -23.390 26.828 Atomic orbital electron populations 1.22782 0.89733 1.06804 1.05683 1.20095 0.94357 0.74577 0.81075 1.93003 1.90749 1.37588 1.96588 1.93009 1.90688 1.80930 1.52668 1.22400 1.06842 1.01998 0.92855 1.19267 0.78445 0.81993 0.86193 1.90731 1.43525 1.58206 1.51938 1.46000 1.54062 1.10317 1.25894 1.21259 0.98234 0.93544 0.86122 1.20804 1.01232 0.93190 0.96505 1.20545 0.96305 1.00655 0.94686 1.22886 0.99646 1.00773 0.96044 1.19356 0.87479 0.93966 0.90852 1.44332 1.11684 1.22618 1.55466 1.19443 1.28214 0.93878 0.97814 0.91455 1.26066 0.99978 1.01634 0.96852 1.70133 1.35997 1.36445 1.16033 0.85262 0.77974 0.79363 0.77338 1.20074 1.21962 1.20093 1.21191 0.92235 0.95157 0.90312 1.20754 0.93357 1.00824 0.97648 1.23186 0.99204 0.87224 1.05827 1.23282 0.87936 0.99660 1.05899 0.90199 0.88153 0.87886 0.74841 0.91596 0.92817 0.90061 0.89028 0.87106 0.98031 0.92685 0.94045 0.96377 0.92279 0.91418 0.89544 0.87355 0.85178 0.85471 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 9.23 71.98 0.66 -1.71 16 2 C 0.34 4.86 2.09 30.60 0.06 4.92 16 3 F -0.20 -3.18 15.65 44.97 0.70 -2.48 16 4 F -0.19 -2.81 15.64 44.97 0.70 -2.11 16 5 C -0.24 -3.72 1.80 -52.93 -0.10 -3.82 16 6 C 0.56 12.16 6.02 87.66 0.53 12.69 16 7 O -0.57 -16.92 16.50 -3.03 -0.05 -16.97 16 8 N -0.71 -13.89 5.43 -463.05 -2.52 -16.41 16 9 C 0.13 3.08 5.66 86.38 0.49 3.57 16 10 C -0.08 -1.82 5.32 29.85 0.16 -1.66 16 11 C -0.12 -3.94 5.11 -15.14 -0.08 -4.02 16 12 C -0.17 -6.76 9.47 27.11 0.26 -6.50 16 13 C 0.21 10.56 5.14 85.42 0.44 11.00 16 14 N -0.62 -32.11 3.00 -703.00 -2.11 -34.22 16 15 C -0.26 -14.81 9.66 84.03 0.81 -14.00 16 16 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 17 C -0.05 -2.86 5.28 84.86 0.45 -2.41 16 18 N -0.94 -56.62 10.87 21.65 0.24 -56.39 16 19 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.14 5.76 6.59 86.32 0.57 6.33 16 24 C -0.09 -2.88 5.95 29.72 0.18 -2.71 16 25 C -0.12 -1.51 9.47 30.62 0.29 -1.22 16 26 C -0.13 -1.56 9.69 30.62 0.30 -1.27 16 27 H 0.08 1.16 7.27 -2.38 -0.02 1.14 16 28 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.41 6.44 7.17 -92.71 -0.67 5.78 16 31 H 0.07 1.63 8.11 -2.38 -0.02 1.61 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.71 7.78 -2.39 -0.02 1.69 16 34 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.11 3.77 7.73 -2.91 -0.02 3.75 16 36 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 37 H 0.05 3.13 6.56 -2.39 -0.02 3.11 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 2.40 7.96 -2.39 -0.02 2.39 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.09 2.31 8.10 -2.39 -0.02 2.29 16 43 H 0.11 1.64 7.84 -2.39 -0.02 1.63 16 44 H 0.13 1.21 7.65 -2.38 -0.02 1.19 16 45 H 0.13 1.17 7.91 -2.39 -0.02 1.15 16 46 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -69.91 379.81 4.34 -65.57 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.32 Total: 16.43 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.02 Total: -0.80 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -4.39 Total: -107.01 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.05 Total: -16.97 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.41 Total: -4.59 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.91 4.34 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161239769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.748 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds