Wall clock time and date at job start Tue Mar 31 2020 14:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32158 * 119.90856 * 2 1 4 4 C 1.33098 * 120.08596 * 179.97438 * 3 2 1 5 5 N 1.38000 * 120.04413 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99943 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00095 * 359.97438 * 5 4 3 8 8 N 1.32864 * 119.91492 * 359.97438 * 4 3 2 9 9 C 1.32843 * 119.82225 * 0.02562 * 8 4 3 10 10 N 1.37996 * 120.04339 * 180.02562 * 9 8 4 11 11 C 1.46497 * 120.00036 * 359.97277 * 10 9 8 12 12 C 1.50704 * 109.46951 * 90.00238 * 11 10 9 13 13 H 1.08005 * 119.99765 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99741 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99767 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00209 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47298 * 89.99908 * 16 14 12 18 18 H 1.48500 * 109.47145 * 209.99771 * 16 14 12 19 19 H 1.48501 * 109.47259 * 329.99786 * 16 14 12 20 20 C 1.46508 * 119.99946 * 179.97438 * 10 9 8 21 21 C 1.50693 * 109.47087 * 89.99655 * 20 10 9 22 22 C 1.38674 * 120.42125 * 269.72103 * 21 20 10 23 23 C 1.38635 * 118.42294 * 179.78847 * 22 21 20 24 24 C 1.38227 * 119.15744 * 0.50702 * 23 22 21 25 25 N 1.31861 * 120.76375 * 359.73308 * 24 23 22 26 26 C 1.31881 * 121.72665 * 359.97438 * 25 24 23 27 27 N 1.32137 * 119.91280 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47611 * 270.00069 * 1 2 3 29 29 H 1.08995 * 109.47392 * 30.00815 * 1 2 3 30 30 H 1.09004 * 109.46765 * 150.00467 * 1 2 3 31 31 H 1.09003 * 109.46820 * 60.00255 * 6 5 4 32 32 H 1.09000 * 109.47209 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47327 * 300.00178 * 6 5 4 34 34 H 1.08994 * 109.46971 * 89.99651 * 7 5 4 35 35 H 1.08995 * 109.47379 * 209.99968 * 7 5 4 36 36 H 1.09003 * 109.47231 * 329.99969 * 7 5 4 37 37 H 1.09002 * 109.46920 * 209.99846 * 11 10 9 38 38 H 1.08992 * 109.47178 * 330.00412 * 11 10 9 39 39 H 0.97000 * 120.00078 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.47035 * 210.00106 * 20 10 9 41 41 H 1.09001 * 109.46836 * 329.99555 * 20 10 9 42 42 H 1.08001 * 120.79056 * 0.02562 * 22 21 20 43 43 H 1.07994 * 120.41941 * 180.22232 * 23 22 21 44 44 H 1.07997 * 119.61616 * 179.74829 * 24 23 22 45 45 H 1.07992 * 119.61670 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1660 1.1456 0.0000 4 6 3.4970 1.1497 0.0005 5 7 4.1842 2.3464 0.0010 6 6 5.6492 2.3498 0.0022 7 6 3.4488 3.6134 0.0005 8 7 4.1631 0.0001 0.0015 9 6 3.4972 -1.1493 0.0015 10 7 4.1845 -2.3460 0.0031 11 6 5.6495 -2.3493 0.0042 12 6 6.1507 -2.3492 1.4255 13 1 5.4482 -2.3464 2.2458 14 6 7.5060 -2.3525 1.6784 15 7 7.9435 -2.3519 2.9188 16 14 8.7210 -2.3565 0.2596 17 1 9.0466 -0.9575 -0.1173 18 1 9.9621 -3.0595 0.6726 19 1 8.1202 -3.0557 -0.9047 20 6 3.4491 -3.6131 0.0037 21 6 3.1980 -4.0487 -1.4169 22 6 2.0440 -3.6563 -2.0781 23 6 1.8571 -4.0772 -3.3857 24 6 2.8155 -4.8773 -3.9791 25 7 3.8988 -5.2353 -3.3180 26 6 4.1122 -4.8489 -2.0753 27 7 2.1660 -1.1453 0.0005 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8898 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 6.0143 1.8368 -0.8876 32 1 6.0101 3.3783 0.0029 33 1 6.0130 1.8368 0.8924 34 1 3.2655 3.9276 1.0280 35 1 4.0364 4.3745 -0.5129 36 1 2.4970 3.4809 -0.5141 37 1 6.0111 -3.2406 -0.5085 38 1 6.0152 -1.4606 -0.5100 39 1 8.8970 -2.3547 3.0968 40 1 4.0361 -4.3736 0.5187 41 1 2.4966 -3.4801 0.5168 42 1 1.3100 -3.0342 -1.5874 43 1 0.9719 -3.7875 -3.9322 44 1 2.6755 -5.2128 -4.9960 45 1 5.0112 -5.1626 -1.5658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:09 Heat of formation + Delta-G solvation = 132.167525 kcal Electronic energy + Delta-G solvation = -28415.710777 eV Core-core repulsion = 24662.767200 eV Total energy + Delta-G solvation = -3752.943577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93333 -39.96529 -37.30236 -36.39690 -33.58678 -32.91441 -32.32162 -31.89449 -31.08803 -29.29717 -28.01208 -27.76019 -26.25304 -25.35539 -23.49181 -22.93393 -22.17560 -21.22774 -20.21242 -18.12416 -17.27165 -17.03615 -16.75799 -16.18880 -15.67828 -15.47073 -15.11535 -14.72373 -14.32711 -14.25046 -14.02681 -13.55057 -13.41060 -13.32113 -13.23739 -12.82708 -12.78159 -12.46950 -12.39842 -12.33526 -12.18228 -12.04477 -11.79532 -11.74242 -11.29063 -11.17149 -10.75835 -10.58130 -10.31945 -9.98805 -9.65586 -9.53905 -9.31728 -9.04585 -8.84618 -8.70745 -8.60426 -7.92605 -7.46196 -6.12943 -4.11854 1.21092 1.45089 1.74333 1.99121 2.87067 3.24546 3.30538 3.33471 3.44215 4.02469 4.30512 4.34694 4.51425 4.61152 4.73384 4.95326 5.07162 5.08259 5.18594 5.19943 5.24534 5.32226 5.45252 5.53899 5.54718 5.64402 5.67442 5.76509 5.81087 5.88639 5.91418 5.96785 6.10593 6.17645 6.27913 6.36307 6.52546 6.62362 6.77632 6.81850 6.85939 7.16127 7.34527 7.53861 7.70470 7.94470 8.07183 8.10985 8.45437 8.90508 9.17707 9.46639 11.00226 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.007123 B = 0.006653 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.019627 B = 4207.754875 C = 7065.869188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.412 3.588 3 N -0.651 5.651 4 C 0.620 3.380 5 N -0.588 5.588 6 C 0.108 3.892 7 C 0.108 3.892 8 N -0.627 5.627 9 C 0.634 3.366 10 N -0.542 5.542 11 C 0.229 3.771 12 C -0.524 4.524 13 H 0.074 0.926 14 C 0.076 3.924 15 N -0.896 5.896 16 Si 0.871 3.129 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.174 3.826 21 C -0.147 4.147 22 C -0.051 4.051 23 C -0.183 4.183 24 C 0.090 3.910 25 N -0.490 5.490 26 C 0.113 3.887 27 N -0.645 5.645 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.042 0.958 39 H 0.264 0.736 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 4.620 -9.724 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.133 3.867 3 N -0.389 5.389 4 C 0.256 3.744 5 N -0.306 5.306 6 C -0.035 4.035 7 C -0.036 4.036 8 N -0.365 5.365 9 C 0.271 3.729 10 N -0.253 5.253 11 C 0.108 3.892 12 C -0.563 4.563 13 H 0.092 0.908 14 C -0.126 4.126 15 N -0.534 5.534 16 Si 0.698 3.302 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.190 1.190 20 C 0.049 3.951 21 C -0.150 4.150 22 C -0.078 4.078 23 C -0.203 4.203 24 C -0.067 4.067 25 N -0.199 5.199 26 C -0.045 4.045 27 N -0.381 5.381 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.159 0.841 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.106 4.049 -10.011 16.222 hybrid contribution 0.354 0.684 -0.134 0.782 sum -11.752 4.733 -10.145 16.231 Atomic orbital electron populations 1.20475 0.85988 1.03531 1.03619 1.22808 0.97124 0.82514 0.84208 1.68256 1.07556 1.31408 1.31633 1.18945 0.84907 0.85952 0.84608 1.45745 1.05972 1.01844 1.77079 1.21590 0.77208 1.01336 1.03350 1.21577 0.97375 0.83181 1.01439 1.68112 1.40176 0.96812 1.31448 1.18953 0.84341 0.86164 0.83430 1.46393 1.07115 0.99911 1.71931 1.19763 0.73296 0.97600 0.98539 1.21260 0.92662 1.51371 0.90975 0.90815 1.24789 0.97968 0.94492 0.95383 1.69895 1.14548 1.50419 1.18558 0.86929 0.81279 0.78865 0.83093 1.19945 1.21055 1.19007 1.20228 0.98473 0.85455 0.90913 1.21471 0.95541 0.98771 0.99256 1.21689 0.96753 0.95543 0.93814 1.22117 1.01152 1.00687 0.96302 1.22699 0.89755 0.94677 0.99549 1.67700 1.21029 1.22400 1.08756 1.22810 0.98068 0.93360 0.90225 1.68323 1.07869 1.30988 1.30949 0.89713 0.89971 0.89913 0.92255 0.91181 0.91264 0.93297 0.91703 0.90269 0.95168 0.94054 0.92554 0.88609 0.88838 0.84122 0.85278 0.83321 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.37 36.01 0.37 -0.47 16 2 C 0.41 6.79 7.69 -156.59 -1.20 5.58 16 3 N -0.65 -11.53 9.18 -11.52 -0.11 -11.64 16 4 C 0.62 12.03 8.19 -322.13 -2.64 9.39 16 5 N -0.59 -9.55 3.36 -191.75 -0.64 -10.19 16 6 C 0.11 1.64 10.17 59.85 0.61 2.25 16 7 C 0.11 1.28 10.42 59.85 0.62 1.90 16 8 N -0.63 -13.76 8.47 -14.75 -0.12 -13.89 16 9 C 0.63 13.37 8.19 -322.13 -2.64 10.73 16 10 N -0.54 -11.30 2.53 -178.64 -0.45 -11.75 16 11 C 0.23 5.37 4.24 -5.19 -0.02 5.35 16 12 C -0.52 -14.38 9.94 -34.44 -0.34 -14.72 16 13 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 16 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 20 C 0.17 2.97 5.57 -5.19 -0.03 2.94 16 21 C -0.15 -2.30 5.48 -104.48 -0.57 -2.87 16 22 C -0.05 -0.72 9.86 -39.27 -0.39 -1.11 16 23 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 24 C 0.09 1.18 11.18 -17.54 -0.20 0.99 16 25 N -0.49 -7.74 10.36 -13.25 -0.14 -7.88 16 26 C 0.11 1.80 10.86 -17.55 -0.19 1.61 16 27 N -0.64 -11.75 8.60 -11.52 -0.10 -11.85 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 36 H 0.08 0.96 7.37 -51.93 -0.38 0.57 16 37 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 38 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 41 H 0.09 1.52 7.32 -51.93 -0.38 1.15 16 42 H 0.14 1.89 7.47 -52.49 -0.39 1.50 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -33.83 381.64 -13.32 -47.16 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.50 Total: 3.13 kcal Atomic # 6 Polarization: 28.09 SS G_CDS: -7.11 Total: 20.98 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -0.79 Total: -93.21 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.83 -13.32 -47.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.325 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds