Wall clock time and date at job start Tue Mar 31 2020 14:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34644 * 125.89847 * 2 1 4 4 N 1.37140 * 106.83033 * 180.02562 * 3 2 1 5 5 C 1.40021 * 126.47539 * 179.97438 * 4 3 2 6 6 C 1.39448 * 120.05428 * 179.97438 * 5 4 3 7 7 C 1.38405 * 117.98474 * 180.02562 * 6 5 4 8 8 C 1.39556 * 117.95519 * 359.97438 * 7 6 5 9 9 N 1.39195 * 120.08919 * 180.02562 * 8 7 6 10 10 C 1.46961 * 110.99520 * 179.97438 * 9 8 7 11 11 C 1.53059 * 109.36302 * 183.18866 * 10 9 8 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47066 * 59.99502 * 18 16 14 20 20 H 1.48496 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46833 * 299.99859 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00478 * 303.80117 * 9 8 7 24 24 N 1.32378 * 119.81216 * 0.27697 * 8 7 6 25 25 N 1.28346 * 122.16218 * 359.42247 * 24 8 7 26 26 C 1.35875 * 107.03730 * 0.23849 * 4 3 2 27 27 N 1.30501 * 108.56485 * 359.60176 * 26 4 3 28 28 H 1.08998 * 109.47545 * 89.99843 * 1 2 3 29 29 H 1.09008 * 109.47134 * 209.99777 * 1 2 3 30 30 H 1.09004 * 109.46920 * 329.99984 * 1 2 3 31 31 H 1.07990 * 126.58479 * 359.97438 * 3 2 1 32 32 H 1.08003 * 121.00977 * 359.97438 * 6 5 4 33 33 H 1.08004 * 121.02253 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.48904 * 63.22498 * 10 9 8 35 35 H 1.08997 * 109.51213 * 303.16784 * 10 9 8 36 36 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 37 37 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 38 38 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 39 39 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 40 40 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 42 42 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 43 43 H 1.09008 * 109.48713 * 296.78266 * 23 9 8 44 44 H 1.09002 * 109.48661 * 56.82228 * 23 9 8 45 45 H 1.08002 * 125.71284 * 179.74346 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2965 1.0907 0.0000 4 7 3.5926 0.6427 -0.0006 5 6 4.7472 1.4349 -0.0013 6 6 6.0059 0.8348 -0.0013 7 6 7.1181 1.6585 -0.0015 8 6 6.9101 3.0385 -0.0022 9 7 7.9971 3.9081 -0.0029 10 6 7.5511 5.3084 -0.0042 11 6 8.7709 6.2293 -0.0853 12 7 9.6589 5.9634 1.0550 13 6 10.8060 6.8812 1.0542 14 6 11.5564 6.7484 2.3543 15 1 11.2151 6.0522 3.1062 16 6 12.6781 7.5164 2.5843 17 7 13.0934 8.3645 1.6689 18 14 13.6088 7.3514 4.1956 19 1 14.0924 5.9556 4.3472 20 1 14.7682 8.2792 4.1947 21 1 12.7057 7.6878 5.3254 22 6 10.1049 4.5631 1.0563 23 6 8.8854 3.6418 1.1370 24 7 5.6763 3.5181 0.0029 25 7 4.6458 2.7530 -0.0024 26 6 3.5445 -0.7152 -0.0063 27 7 2.2934 -1.0866 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9714 2.1205 -0.0004 32 1 6.1098 -0.2402 -0.0003 33 1 8.1163 1.2461 -0.0019 34 1 6.9996 5.5152 0.9130 35 1 6.9051 5.4839 -0.8644 36 1 8.4442 7.2688 -0.0572 37 1 9.3072 6.0414 -1.0154 38 1 11.4688 6.6335 0.2252 39 1 10.4514 7.9057 0.9423 40 1 13.8828 8.9046 1.8307 41 1 10.6563 4.3562 0.1391 42 1 10.7507 4.3879 1.9166 43 1 8.3493 3.8294 2.0674 44 1 9.2118 2.6021 1.1086 45 1 4.3985 -1.3763 -0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165054968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:10 Heat of formation + Delta-G solvation = 153.339379 kcal Electronic energy + Delta-G solvation = -26772.689512 eV Core-core repulsion = 23020.664016 eV Total energy + Delta-G solvation = -3752.025496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.78826 -41.42451 -39.02068 -35.98026 -34.85691 -33.40520 -32.55224 -31.66704 -30.82490 -30.44488 -27.97378 -27.42756 -25.68095 -24.87396 -23.88925 -22.99976 -21.85610 -21.57333 -20.44401 -19.57402 -19.01154 -17.68742 -17.53832 -16.43104 -16.36284 -15.52925 -15.28665 -14.95800 -14.74157 -14.47988 -14.43021 -14.28325 -14.18841 -14.05801 -13.66840 -13.40622 -13.18829 -13.10017 -12.56729 -12.31666 -12.07485 -11.85461 -11.50094 -11.25651 -11.12934 -10.94278 -10.89107 -10.87509 -10.65191 -10.52085 -10.47885 -10.11023 -9.88815 -9.77214 -9.29352 -8.82800 -8.51663 -8.38211 -7.41428 -6.10527 -4.12909 0.21059 0.31807 1.78844 1.96111 2.66465 3.04518 3.27323 3.30535 3.32492 3.34529 3.75526 3.89240 4.06173 4.14008 4.34166 4.35693 4.55738 4.72075 4.81978 4.87959 5.00987 5.11533 5.16296 5.23805 5.25980 5.38489 5.41093 5.45678 5.52177 5.52889 5.65550 5.66874 5.74995 5.87325 6.00529 6.26017 6.33667 6.35348 6.42161 6.61662 6.70734 6.78980 7.16721 7.22451 7.57946 7.68180 7.95159 8.05738 8.29440 8.41397 8.93639 9.51736 11.00105 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.002015 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.221358 B =13892.580426 C =14142.409814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.004 4.004 3 C -0.025 4.025 4 N -0.401 5.401 5 C 0.251 3.749 6 C -0.107 4.107 7 C -0.103 4.103 8 C 0.260 3.740 9 N -0.465 5.465 10 C 0.066 3.934 11 C 0.052 3.948 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.512 4.512 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.066 3.934 23 C 0.060 3.940 24 N -0.251 5.251 25 N -0.225 5.225 26 C 0.193 3.807 27 N -0.474 5.474 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.033 0.967 38 H -0.006 1.006 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 -17.212 -4.830 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.130 4.130 3 C -0.154 4.154 4 N -0.084 5.084 5 C 0.013 3.987 6 C -0.137 4.137 7 C -0.134 4.134 8 C 0.020 3.980 9 N -0.183 5.183 10 C -0.060 4.060 11 C -0.077 4.077 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.063 4.063 23 C -0.066 4.066 24 N -0.099 5.099 25 N -0.070 5.070 26 C -0.089 4.089 27 N -0.192 5.192 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.200 0.800 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.011 0.989 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.018 -16.397 -4.840 24.838 hybrid contribution 2.049 -0.413 0.545 2.160 sum -15.969 -16.810 -4.295 23.580 Atomic orbital electron populations 1.20055 0.87084 1.02921 1.02439 1.20818 0.96855 0.88105 1.07234 1.22716 0.81633 1.01228 1.09859 1.42819 1.04454 1.06937 1.54153 1.19780 0.85696 0.91093 1.02150 1.21802 0.90118 1.02412 0.99356 1.21970 1.00881 0.91941 0.98652 1.21737 0.91213 0.92069 0.93004 1.59314 1.12329 1.05676 1.41005 1.22254 0.97439 0.83545 1.02789 1.22170 0.93335 0.98709 0.93455 1.62332 1.21126 1.03290 1.39670 1.19718 0.85537 0.91049 0.96771 1.21084 1.09678 1.22747 1.01527 0.91955 1.24991 0.97325 0.95218 0.96987 1.69947 1.24928 1.24692 1.34000 0.86552 0.79190 0.77869 0.83738 1.20282 1.21320 1.20157 1.22042 0.93688 0.88500 1.02088 1.22574 0.94097 1.00474 0.89419 1.73298 0.95141 1.27403 1.14042 1.72723 1.23489 1.00872 1.09875 1.25281 0.97469 0.80463 1.05710 1.70223 1.00126 1.30194 1.18680 0.91203 0.91017 0.91034 0.79972 0.82438 0.81838 0.91897 0.89663 0.90003 0.94834 0.98855 0.94947 0.92775 0.94717 0.88483 0.92381 0.90012 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.00 0.38 -0.11 16 2 C 0.00 -0.04 7.08 -82.86 -0.59 -0.63 16 3 C -0.02 -0.25 11.10 -16.45 -0.18 -0.44 16 4 N -0.40 -4.11 2.99 -63.66 -0.19 -4.30 16 5 C 0.25 2.69 7.59 -154.07 -1.17 1.53 16 6 C -0.11 -0.84 9.58 -39.07 -0.37 -1.21 16 7 C -0.10 -0.91 9.31 -39.03 -0.36 -1.28 16 8 C 0.26 3.21 6.48 -154.69 -1.00 2.21 16 9 N -0.47 -6.31 4.74 -172.84 -0.82 -7.13 16 10 C 0.07 0.98 4.80 -3.76 -0.02 0.96 16 11 C 0.05 0.89 5.61 -3.77 -0.02 0.87 16 12 N -0.54 -10.82 4.70 -235.91 -1.11 -11.93 16 13 C 0.19 4.80 4.72 -4.97 -0.02 4.78 16 14 C -0.51 -13.68 8.47 -34.44 -0.29 -13.98 16 15 H 0.06 1.63 7.13 -52.48 -0.37 1.26 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.07 1.13 5.43 -3.77 -0.02 1.11 16 23 C 0.06 0.80 5.38 -3.77 -0.02 0.78 16 24 N -0.25 -3.50 9.89 31.26 0.31 -3.19 16 25 N -0.23 -2.97 11.05 31.38 0.35 -2.63 16 26 C 0.19 1.73 11.92 -89.61 -1.07 0.66 16 27 N -0.47 -5.28 11.24 -10.68 -0.12 -5.40 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.16 0.61 6.86 -52.48 -0.36 0.25 16 33 H 0.16 1.02 7.25 -52.48 -0.38 0.64 16 34 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 36 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 39 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 1.78 6.79 -51.93 -0.35 1.43 16 43 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.08 0.83 6.84 -51.93 -0.36 0.48 16 45 H 0.21 0.97 7.10 -52.49 -0.37 0.60 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -32.36 369.42 -11.54 -43.90 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.37 Total: -2.35 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.86 Total: -3.30 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.85 Total: -59.68 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.36 -11.54 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165054968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.234 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds