Wall clock time and date at job start Tue Mar 31 2020 14:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31783 * 119.04715 * 2 1 4 4 C 1.33063 * 120.83666 * 180.28504 * 3 2 1 5 5 N 1.38584 * 120.50464 * 179.71261 * 4 3 2 6 6 C 1.46499 * 119.99619 * 10.04414 * 5 4 3 7 7 C 1.50696 * 109.47534 * 270.00008 * 6 5 4 8 8 H 1.08000 * 120.00033 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00366 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00263 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99896 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47118 * 90.00046 * 11 9 7 13 13 H 1.48507 * 109.46952 * 210.00305 * 11 9 7 14 14 H 1.48496 * 109.47028 * 329.99902 * 11 9 7 15 15 C 1.46494 * 120.00554 * 190.04606 * 5 4 3 16 16 C 1.54894 * 110.75965 * 125.85433 * 15 5 4 17 17 C 1.54260 * 104.31500 * 156.32390 * 16 15 5 18 18 C 1.53877 * 106.59930 * 336.32827 * 17 16 15 19 19 C 1.54262 * 106.59609 * 359.97438 * 18 17 16 20 20 C 1.39387 * 118.99606 * 359.44316 * 4 3 2 21 21 C 1.38857 * 118.27859 * 0.27422 * 20 4 3 22 22 N 1.39669 * 120.46856 * 180.02562 * 21 20 4 23 23 C 1.34858 * 126.84642 * 179.71343 * 22 21 20 24 24 N 1.30796 * 108.00814 * 179.83589 * 23 22 21 25 25 C 1.33310 * 109.84892 * 0.43293 * 24 23 22 26 26 N 1.30699 * 109.02774 * 359.73028 * 25 24 23 27 27 N 1.31705 * 119.05163 * 179.72094 * 2 1 3 28 28 H 1.08996 * 109.47168 * 270.27663 * 1 2 3 29 29 H 1.09005 * 109.47007 * 30.28343 * 1 2 3 30 30 H 1.09006 * 109.46508 * 150.27662 * 1 2 3 31 31 H 1.09001 * 109.47222 * 30.00405 * 6 5 4 32 32 H 1.09002 * 109.46964 * 150.00007 * 6 5 4 33 33 H 0.97000 * 120.00084 * 179.97438 * 10 9 7 34 34 H 1.09003 * 110.81790 * 2.52280 * 15 5 4 35 35 H 1.09000 * 110.48489 * 37.58190 * 16 15 5 36 36 H 1.08996 * 110.48464 * 275.07077 * 16 15 5 37 37 H 1.09002 * 110.03498 * 95.60883 * 17 16 15 38 38 H 1.08997 * 110.03677 * 216.98972 * 17 16 15 39 39 H 1.08999 * 110.03475 * 119.28297 * 18 17 16 40 40 H 1.09002 * 110.02987 * 240.71281 * 18 17 16 41 41 H 1.09004 * 110.48297 * 142.29546 * 19 18 17 42 42 H 1.08997 * 110.49188 * 264.79911 * 19 18 17 43 43 H 1.08008 * 120.85897 * 180.24668 * 20 4 3 44 44 H 1.07998 * 125.99510 * 359.97438 * 23 22 21 45 45 H 1.07996 * 125.48915 * 179.75091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1468 1.1521 0.0000 4 6 3.4768 1.1936 -0.0057 5 7 4.1426 2.4090 -0.0116 6 6 3.3998 3.6522 0.2095 7 6 2.9218 4.1939 -1.1130 8 1 3.1483 3.6649 -2.0269 9 6 2.1953 5.3650 -1.1563 10 7 1.7778 5.8375 -2.3105 11 14 1.8028 6.2797 0.4244 12 1 2.8856 7.2536 0.7147 13 1 0.5147 7.0026 0.2712 14 1 1.6960 5.3099 1.5439 15 6 5.5892 2.4508 -0.2391 16 6 5.9338 3.4071 -1.4079 17 6 7.3965 3.8200 -1.1442 18 6 7.6421 3.6299 0.3629 19 6 6.3198 3.1087 0.9625 20 6 4.1903 -0.0038 0.0002 21 6 3.4765 -1.1948 0.0059 22 7 4.1450 -2.4211 0.0124 23 6 3.5846 -3.6477 0.0238 24 7 4.5479 -4.5324 0.0231 25 6 5.7294 -3.9151 0.0209 26 7 5.5349 -2.6227 0.0144 27 7 2.1466 -1.1513 0.0056 28 1 -0.3633 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5183 30 1 -0.3632 -0.8925 -0.5096 31 1 2.5420 3.4535 0.8522 32 1 4.0505 4.3841 0.6882 33 1 1.2663 6.6611 -2.3409 34 1 5.9804 1.4514 -0.4296 35 1 5.2819 4.2805 -1.3911 36 1 5.8501 2.8880 -2.3627 37 1 8.0728 3.1844 -1.7158 38 1 7.5450 4.8644 -1.4187 39 1 8.4376 2.9020 0.5227 40 1 7.9095 4.5823 0.8206 41 1 6.5182 2.3695 1.7386 42 1 5.7316 3.9337 1.3642 43 1 5.2704 -0.0051 -0.0002 44 1 2.5260 -3.8618 0.0300 45 1 6.6923 -4.4041 0.0237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166536802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:03 Heat of formation + Delta-G solvation = 155.600294 kcal Electronic energy + Delta-G solvation = -28285.960001 eV Core-core repulsion = 24534.032545 eV Total energy + Delta-G solvation = -3751.927456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.42179 -40.67675 -38.53571 -35.59444 -34.74718 -32.91604 -31.80202 -31.41211 -31.11039 -29.00168 -28.39980 -27.77076 -26.83974 -24.67211 -22.90319 -22.36100 -21.67125 -21.15952 -20.02416 -19.34248 -18.43310 -17.25378 -16.89110 -16.35051 -16.11285 -15.44526 -15.23518 -15.07809 -14.82133 -14.56037 -14.29101 -14.02692 -13.45050 -13.20581 -13.15982 -12.72378 -12.49299 -12.35856 -12.18679 -12.18565 -11.83227 -11.77962 -11.16668 -11.03539 -10.96628 -10.81375 -10.72575 -10.44675 -10.36070 -10.29863 -10.20710 -10.05002 -10.03434 -9.88866 -9.47008 -8.97602 -8.91089 -8.64907 -7.31638 -6.14814 -4.12499 0.68034 1.47254 1.85848 2.11186 2.75199 3.19467 3.24326 3.30929 3.34679 4.07168 4.12599 4.21663 4.32421 4.43262 4.64254 4.86455 4.90343 5.02243 5.09473 5.13274 5.18663 5.38939 5.47966 5.66150 5.70998 5.74843 5.76202 5.81849 5.84157 5.88580 5.91404 6.04637 6.09680 6.12815 6.18079 6.26527 6.32176 6.46753 6.52449 6.60191 6.75965 6.92149 6.97957 7.13642 7.50762 7.64530 7.80949 7.93842 8.42180 8.63102 8.89817 9.44449 10.98059 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.004434 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.985522 B = 6313.055108 C = 8150.093219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.387 3.613 3 N -0.549 5.549 4 C 0.469 3.531 5 N -0.553 5.553 6 C 0.221 3.779 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.895 5.895 11 Si 0.868 3.132 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.143 3.857 16 C -0.138 4.138 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.136 4.136 20 C -0.297 4.297 21 C 0.423 3.577 22 N -0.325 5.325 23 C 0.293 3.707 24 N -0.546 5.546 25 C 0.206 3.794 26 N -0.305 5.305 27 N -0.597 5.597 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.149 0.851 44 H 0.228 0.772 45 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -11.981 6.105 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.117 3.883 3 N -0.273 5.273 4 C 0.224 3.776 5 N -0.257 5.257 6 C 0.101 3.899 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.127 4.127 10 N -0.533 5.533 11 Si 0.695 3.305 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.039 3.961 16 C -0.176 4.176 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.175 4.175 20 C -0.329 4.329 21 C 0.192 3.808 22 N -0.111 5.111 23 C -0.003 4.003 24 N -0.272 5.272 25 C -0.096 4.096 26 N -0.131 5.131 27 N -0.323 5.323 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.166 0.834 44 H 0.244 0.756 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.050 -11.373 6.024 14.221 hybrid contribution 0.506 0.586 0.624 0.994 sum 6.556 -10.787 6.648 14.267 Atomic orbital electron populations 1.20554 0.85374 1.04330 1.03710 1.22706 0.97315 0.81063 0.87213 1.68058 1.07666 1.29246 1.22366 1.18310 0.87812 0.86031 0.85464 1.46854 1.06216 1.03783 1.68885 1.19760 0.91473 0.80306 0.98343 1.21224 1.34180 1.07693 0.92532 0.90544 1.24804 0.95107 0.97032 0.95754 1.69886 1.37311 1.21703 1.24388 0.86970 0.78395 0.80442 0.84649 1.20224 1.20961 1.18933 1.22202 0.78782 0.99665 0.95497 1.22872 0.96059 1.01659 0.97022 1.22080 0.96958 1.01404 0.95589 1.22032 0.96861 1.00795 0.96001 1.22804 0.96407 1.00775 0.97504 1.21542 1.02351 0.90623 1.18361 1.17365 0.88263 0.82006 0.93212 1.47439 1.04793 1.05297 1.53525 1.26414 1.01174 0.79699 0.92977 1.70709 0.98296 1.33198 1.24990 1.26242 0.98504 0.87880 0.97023 1.78189 0.89702 1.19050 1.26143 1.67381 1.06097 1.32237 1.26631 0.89743 0.88893 0.89869 0.93937 0.95379 0.92569 0.89314 0.87261 0.91984 0.92354 0.91668 0.92083 0.91813 0.91847 0.90469 0.83390 0.75617 0.75958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.32 36.01 0.37 -0.67 16 2 C 0.39 6.60 7.64 -157.28 -1.20 5.40 16 3 N -0.55 -11.04 9.29 -10.01 -0.09 -11.13 16 4 C 0.47 9.17 7.34 -154.76 -1.14 8.03 16 5 N -0.55 -10.81 2.61 -165.00 -0.43 -11.24 16 6 C 0.22 4.93 3.52 -5.20 -0.02 4.92 16 7 C -0.52 -13.52 7.95 -34.44 -0.27 -13.79 16 8 H 0.08 2.25 8.00 -52.49 -0.42 1.83 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 11 Si 0.87 20.21 27.47 -169.99 -4.67 15.55 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 15 C 0.14 2.34 3.22 -65.74 -0.21 2.13 16 16 C -0.14 -2.33 6.07 -25.07 -0.15 -2.48 16 17 C -0.12 -1.64 6.80 -25.62 -0.17 -1.81 16 18 C -0.12 -1.45 6.80 -25.61 -0.17 -1.63 16 19 C -0.14 -1.94 6.39 -24.88 -0.16 -2.10 16 20 C -0.30 -5.17 8.96 -38.92 -0.35 -5.52 16 21 C 0.42 7.03 7.59 -153.90 -1.17 5.87 16 22 N -0.33 -4.85 3.80 -13.23 -0.05 -4.90 16 23 C 0.29 3.71 12.30 -90.30 -1.11 2.60 16 24 N -0.55 -6.93 11.19 -15.73 -0.18 -7.10 16 25 C 0.21 2.40 13.03 -91.76 -1.20 1.21 16 26 N -0.31 -4.35 12.11 29.30 0.35 -4.00 16 27 N -0.60 -9.67 9.92 -9.87 -0.10 -9.77 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 1.01 6.63 -51.93 -0.34 0.67 16 32 H 0.03 0.61 5.76 -51.93 -0.30 0.31 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.09 1.36 5.61 -51.93 -0.29 1.07 16 35 H 0.11 2.23 5.75 -51.93 -0.30 1.93 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 43 H 0.15 2.43 5.80 -52.48 -0.30 2.12 16 44 H 0.23 2.18 8.06 -52.49 -0.42 1.75 16 45 H 0.22 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.23 366.10 -12.03 -43.25 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.10 Total: 5.02 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -7.05 Total: 4.10 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: 0.28 Total: -73.44 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.23 -12.03 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.853 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds