Wall clock time and date at job start Tue Mar 31 2020 16:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47451 * 2 1 4 4 C 1.86300 * 109.46879 * 240.00286 * 2 1 3 5 5 C 1.90002 * 109.47391 * 120.00385 * 2 1 3 6 6 C 3.07394 * 109.47482 * 120.00378 * 2 1 3 7 7 C 4.50604 * 109.47362 * 120.00286 * 2 1 3 8 8 C 1.40162 * 120.88503 * 26.56190 * 7 6 5 9 9 C 1.37750 * 119.16798 * 180.02562 * 8 7 6 10 10 N 1.32037 * 120.99677 * 359.97438 * 9 8 7 11 11 C 1.32448 * 121.95657 * 359.70524 * 10 9 8 12 12 N 1.39040 * 119.64628 * 180.29322 * 11 10 9 13 13 C 1.46846 * 111.00293 * 236.33690 * 12 11 10 14 14 C 1.53031 * 109.52362 * 174.15809 * 13 12 11 15 15 C 1.53121 * 109.27734 * 59.18546 * 14 13 12 16 16 C 1.53115 * 109.15645 * 302.34140 * 15 14 13 17 17 H 1.09008 * 109.50577 * 297.71249 * 16 15 14 18 18 C 1.50700 * 109.50269 * 177.63797 * 16 15 14 19 19 H 1.07997 * 120.00135 * 245.43947 * 18 16 15 20 20 C 1.37886 * 120.00013 * 65.43439 * 18 16 15 21 21 N 1.31513 * 119.99666 * 9.56375 * 20 18 16 22 22 Si 1.86800 * 119.99947 * 189.56872 * 20 18 16 23 23 H 1.48501 * 109.47306 * 94.99101 * 22 20 18 24 24 H 1.48494 * 109.46849 * 214.99010 * 22 20 18 25 25 H 1.48500 * 109.46964 * 334.99121 * 22 20 18 26 26 C 1.46844 * 110.99963 * 112.12907 * 12 11 10 27 27 C 1.38890 * 120.71354 * 0.58621 * 11 10 9 28 28 H 1.09000 * 109.46804 * 299.99482 * 1 2 3 29 29 H 1.08995 * 109.47445 * 60.00014 * 1 2 3 30 30 H 1.09003 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47376 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46768 * 300.00581 * 3 2 1 33 33 H 1.09000 * 109.46862 * 59.99923 * 3 2 1 34 34 H 1.09003 * 109.47211 * 299.99499 * 4 2 1 35 35 H 1.08998 * 109.47538 * 60.00109 * 4 2 1 36 36 H 1.09005 * 109.47234 * 179.97438 * 4 2 1 37 37 H 1.08004 * 120.42026 * 0.04107 * 8 7 6 38 38 H 1.08004 * 119.50497 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.46254 * 294.17844 * 13 12 11 40 40 H 1.09002 * 109.46067 * 54.15212 * 13 12 11 41 41 H 1.09003 * 109.49766 * 179.12129 * 14 13 12 42 42 H 1.08997 * 109.50523 * 299.24028 * 14 13 12 43 43 H 1.08994 * 109.52603 * 62.24754 * 15 14 13 44 44 H 1.08997 * 109.51963 * 182.44054 * 15 14 13 45 45 H 0.97003 * 119.99966 * 179.97438 * 21 20 18 46 46 H 1.09008 * 109.46344 * 305.85477 * 26 12 11 47 47 H 1.08997 * 109.46919 * 65.82648 * 26 12 11 48 48 H 1.08005 * 120.53225 * 179.69973 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4964 -0.8958 1.5513 6 6 2.8878 -1.4492 2.5097 7 6 3.3652 -2.1243 3.6790 8 6 2.9801 -3.4432 3.9559 9 6 3.4600 -4.0585 5.0910 10 7 4.2736 -3.4249 5.9156 11 6 4.6693 -2.1809 5.6918 12 7 5.5320 -1.5616 6.5892 13 6 4.9567 -0.3077 7.0924 14 6 5.8632 0.2700 8.1817 15 6 7.2560 0.5238 7.5983 16 6 7.8125 -0.7879 7.0377 17 1 7.9178 -1.5130 7.8448 18 6 9.1589 -0.5355 6.4096 19 1 9.2907 -0.6629 5.3453 20 6 10.2226 -0.1416 7.1937 21 7 10.1181 -0.1671 8.5044 22 14 11.8117 0.4282 6.3941 23 1 11.8053 1.9088 6.2799 24 1 12.9652 0.0010 7.2259 25 1 11.9279 -0.1721 5.0408 26 6 6.8495 -1.3350 5.9816 27 6 4.2270 -1.4862 4.5734 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7564 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1207 2.2702 0.8900 34 1 2.1206 -1.9059 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5740 -0.8778 -1.5215 37 1 2.3155 -3.9707 3.2876 38 1 3.1665 -5.0746 5.3099 39 1 4.8716 0.4071 6.2738 40 1 3.9683 -0.5028 7.5084 41 1 5.4438 1.2087 8.5439 42 1 5.9377 -0.4384 9.0067 43 1 7.1872 1.2614 6.7988 44 1 7.9169 0.8947 8.3816 45 1 10.8665 0.1096 9.0560 46 1 7.2360 -2.2764 5.5907 47 1 6.7557 -0.6155 5.1683 48 1 4.5478 -0.4702 4.3962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:42 Heat of formation + Delta-G solvation = 43.637052 kcal Electronic energy + Delta-G solvation = -24455.043221 eV Core-core repulsion = 21132.714714 eV Total energy + Delta-G solvation = -3322.328506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46093 -37.95896 -34.49275 -33.76782 -32.02378 -30.85856 -29.99593 -29.25047 -29.03454 -27.88972 -27.85277 -24.97618 -24.23322 -23.92604 -21.98925 -21.41945 -18.78628 -18.43843 -16.57243 -16.30695 -15.95710 -15.61904 -14.82691 -14.55307 -14.30207 -13.82386 -13.69714 -13.63973 -13.46043 -13.44784 -13.32106 -12.79459 -12.75793 -12.68719 -12.59046 -12.54640 -12.45834 -12.11886 -11.82545 -11.69826 -11.58002 -10.96793 -10.95746 -10.79852 -10.74366 -10.41272 -10.21657 -10.09216 -9.97781 -9.70425 -9.46887 -9.21565 -9.14468 -8.90701 -8.70495 -8.31413 -7.87280 -6.01286 -4.03205 0.77641 1.11672 2.03586 2.23654 2.29473 2.94341 3.01713 3.22817 3.30882 3.38360 3.41160 3.83965 3.97772 4.45576 4.58153 4.82562 4.97319 5.09459 5.23369 5.24416 5.25157 5.28328 5.29471 5.31257 5.33133 5.34137 5.57566 5.64782 5.67828 5.89181 5.95176 5.97561 6.07009 6.07760 6.11493 6.13545 6.28373 6.39074 6.51451 6.61561 6.64003 6.86219 7.11451 7.27337 7.41463 7.45800 7.61951 7.73223 7.98401 8.08213 8.29793 8.43535 9.00448 9.59716 11.07914 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.002672 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.755162 B =10474.967458 C =11717.679079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.144 2.856 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.391 4.391 6 C -0.134 4.134 7 C 0.052 3.948 8 C -0.171 4.171 9 C 0.113 3.887 10 N -0.464 5.464 11 C 0.330 3.670 12 N -0.501 5.501 13 C 0.072 3.928 14 C -0.116 4.116 15 C -0.107 4.107 16 C 0.054 3.946 17 H 0.046 0.954 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.079 3.921 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.076 0.924 45 H 0.260 0.740 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.140 0.056 -16.280 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.329 2.671 3 C -0.561 4.561 4 C -0.559 4.559 5 C -0.426 4.426 6 C -0.134 4.134 7 C 0.043 3.957 8 C -0.191 4.191 9 C -0.044 4.044 10 N -0.174 5.174 11 C 0.101 3.899 12 N -0.224 5.224 13 C -0.055 4.055 14 C -0.154 4.154 15 C -0.145 4.145 16 C 0.036 3.964 17 H 0.064 0.936 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.715 3.285 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.046 4.046 27 C -0.203 4.203 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.179 0.821 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.594 -0.718 -14.819 24.578 hybrid contribution 0.622 1.083 -1.485 1.940 sum -18.972 0.365 -16.304 25.018 Atomic orbital electron populations 1.26096 1.20033 1.04879 1.04821 0.77006 0.65895 0.64761 0.59407 1.26114 1.06942 1.18214 1.04803 1.26104 1.06874 1.08339 1.14603 1.36038 1.00490 1.01485 1.04548 1.20886 0.99254 0.98339 0.94919 1.16367 0.95574 0.92992 0.90742 1.22131 1.02716 0.94364 0.99870 1.22607 0.92519 0.99628 0.89687 1.67372 1.10577 1.09154 1.30287 1.19757 0.91795 0.89575 0.88811 1.58873 1.02791 1.24857 1.35846 1.22099 0.97582 0.88194 0.97615 1.21676 0.97204 0.99082 0.97459 1.21630 0.93020 0.99823 1.00040 1.18703 0.91050 0.93161 0.93528 0.93618 1.21062 0.94087 1.46504 0.94038 0.92779 1.24916 0.98301 0.95602 0.94724 1.69979 1.31826 1.46995 1.03405 0.86655 0.83323 0.79034 0.79458 1.20736 1.21262 1.19924 1.22430 0.85253 0.99533 0.97344 1.22809 0.99419 1.02340 0.95744 0.90879 0.90520 0.90930 0.90742 0.90550 0.90850 0.90929 0.90532 0.90789 0.84700 0.82139 0.95076 0.92009 0.92879 0.91467 0.94673 0.90518 0.92990 0.91806 0.95625 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -2.26 8.65 101.05 0.87 -1.39 16 2 Si 1.14 6.14 14.26 -169.99 -2.42 3.71 16 3 C -0.45 -2.71 8.65 101.05 0.87 -1.84 16 4 C -0.45 -2.44 8.65 101.05 0.87 -1.57 16 5 C -0.39 -4.32 12.14 29.55 0.36 -3.96 16 6 C -0.13 -1.87 13.31 -38.83 -0.52 -2.38 16 7 C 0.05 0.78 5.75 -106.72 -0.61 0.16 16 8 C -0.17 -2.21 9.85 -39.04 -0.38 -2.60 16 9 C 0.11 1.55 11.16 -17.64 -0.20 1.36 16 10 N -0.46 -8.28 10.38 -12.53 -0.13 -8.41 16 11 C 0.33 6.11 5.68 -155.03 -0.88 5.23 16 12 N -0.50 -10.14 4.70 -173.29 -0.82 -10.95 16 13 C 0.07 1.31 5.04 -3.84 -0.02 1.29 16 14 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 15 C -0.11 -2.47 5.09 -26.61 -0.14 -2.61 16 16 C 0.05 1.38 2.13 -91.69 -0.19 1.18 16 17 H 0.05 1.30 8.09 -51.92 -0.42 0.88 16 18 C -0.52 -14.26 8.48 -34.44 -0.29 -14.55 16 19 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 20 C 0.07 1.85 5.22 -17.82 -0.09 1.76 16 21 N -0.88 -25.43 12.18 55.43 0.68 -24.76 16 22 Si 0.89 21.30 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 26 C 0.08 1.77 4.43 -3.84 -0.02 1.75 16 27 C -0.18 -3.00 8.47 -38.82 -0.33 -3.33 16 28 H 0.07 0.40 7.96 -51.93 -0.41 -0.02 16 29 H 0.08 0.29 7.96 -51.93 -0.41 -0.13 16 30 H 0.07 0.37 7.96 -51.93 -0.41 -0.05 16 31 H 0.07 0.50 7.96 -51.93 -0.41 0.09 16 32 H 0.08 0.35 7.96 -51.93 -0.41 -0.07 16 33 H 0.07 0.47 7.96 -51.93 -0.41 0.06 16 34 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 35 H 0.08 0.31 7.96 -51.93 -0.41 -0.10 16 36 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 37 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.03 0.54 7.11 -51.93 -0.37 0.17 16 40 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.96 6.97 -51.93 -0.36 1.60 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.06 1.47 8.11 -51.92 -0.42 1.05 16 47 H 0.03 0.55 7.75 -51.93 -0.40 0.15 16 48 H 0.14 2.20 7.09 -52.48 -0.37 1.83 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -32.34 402.72 -10.65 -42.99 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.15 Total: -1.01 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.85 Total: -23.91 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.27 Total: -44.12 kcal Atomic # 14 Polarization: 27.43 SS G_CDS: -7.45 Total: 19.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.34 -10.65 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.626 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds