Wall clock time and date at job start Tue Mar 31 2020 16:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86299 * 109.47561 * 2 1 4 4 C 1.86306 * 109.47055 * 239.99990 * 2 1 3 5 5 C 1.90004 * 109.47274 * 120.00045 * 2 1 3 6 6 C 3.07404 * 109.47177 * 120.00191 * 2 1 3 7 7 C 4.50603 * 109.47153 * 120.00084 * 2 1 3 8 8 C 1.40167 * 120.47638 * 278.34862 * 7 6 5 9 9 C 1.38002 * 118.38393 * 179.97438 * 8 7 6 10 10 C 1.39265 * 119.24656 * 0.02562 * 9 8 7 11 11 N 1.38898 * 119.55365 * 179.97438 * 10 9 8 12 12 C 1.46494 * 119.99949 * 359.97438 * 11 10 9 13 13 H 1.09000 * 109.35816 * 324.81804 * 12 11 10 14 14 C 1.52951 * 109.42604 * 84.64139 * 12 11 10 15 15 C 1.53235 * 109.41904 * 183.69258 * 14 12 11 16 16 C 1.51272 * 108.53109 * 305.37781 * 15 14 12 17 17 C 1.37879 * 120.84971 * 231.32370 * 16 15 14 18 18 N 1.31513 * 120.00315 * 180.02562 * 17 16 15 19 19 Si 1.86801 * 119.99728 * 0.02562 * 17 16 15 20 20 H 1.48503 * 109.47130 * 90.00287 * 19 17 16 21 21 H 1.48500 * 109.47388 * 210.00134 * 19 17 16 22 22 H 1.48500 * 109.47438 * 330.00008 * 19 17 16 23 23 C 1.51265 * 118.30125 * 51.34935 * 16 15 14 24 24 C 1.52965 * 109.41278 * 205.00228 * 12 11 10 25 25 N 1.32460 * 120.89459 * 0.26407 * 10 9 8 26 26 C 1.31787 * 121.76605 * 359.44388 * 25 10 9 27 27 H 1.09003 * 109.47130 * 300.00090 * 1 2 3 28 28 H 1.09000 * 109.46882 * 59.99910 * 1 2 3 29 29 H 1.08996 * 109.47664 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47560 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47096 * 299.99959 * 3 2 1 32 32 H 1.09003 * 109.46972 * 59.99813 * 3 2 1 33 33 H 1.09008 * 109.46767 * 299.99938 * 4 2 1 34 34 H 1.08996 * 109.46849 * 59.99965 * 4 2 1 35 35 H 1.09003 * 109.46995 * 180.02562 * 4 2 1 36 36 H 1.08003 * 120.80772 * 359.95961 * 8 7 6 37 37 H 1.07999 * 120.37906 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99984 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47552 * 63.70848 * 14 12 11 40 40 H 1.09003 * 109.48446 * 303.67487 * 14 12 11 41 41 H 1.08995 * 109.62638 * 185.66368 * 15 14 12 42 42 H 1.09002 * 109.78512 * 65.17863 * 15 14 12 43 43 H 0.96999 * 119.99963 * 180.02562 * 18 17 16 44 44 H 1.09007 * 109.62320 * 188.93382 * 23 16 15 45 45 H 1.09002 * 109.78860 * 68.45837 * 23 16 15 46 46 H 1.09002 * 109.48383 * 56.31406 * 24 12 11 47 47 H 1.08999 * 109.47882 * 296.28769 * 24 12 11 48 48 H 1.07998 * 119.66802 * 180.31057 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4963 -0.8957 1.5514 6 6 2.8876 -1.4492 2.5099 7 6 3.3650 -2.1242 3.6791 8 6 2.8953 -1.7638 4.9496 9 6 3.3840 -2.4432 6.0468 10 6 4.3208 -3.4563 5.8580 11 7 4.8174 -4.1440 6.9579 12 6 4.3559 -3.8014 8.3054 13 1 4.1804 -2.7273 8.3650 14 6 3.0533 -4.5463 8.6016 15 6 2.5221 -4.1179 9.9736 16 6 3.6117 -4.3351 11.0002 17 6 3.3617 -5.0407 12.1581 18 7 4.3212 -5.2191 13.0396 19 14 1.6600 -5.7433 12.4747 20 1 1.5795 -7.1165 11.9152 21 1 1.4076 -5.7891 13.9373 22 1 0.6401 -4.8827 11.8232 23 6 4.9824 -3.7578 10.7243 24 6 5.4243 -4.1993 9.3252 25 7 4.7489 -3.7692 4.6441 26 6 4.3035 -3.1488 3.5701 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1208 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9060 -1.5211 34 1 2.1206 -0.3644 -2.4111 35 1 3.5740 -0.8787 -1.5210 36 1 2.1687 -0.9734 5.0670 37 1 3.0446 -2.1917 7.0408 38 1 5.4698 -4.8510 6.8338 39 1 3.2410 -5.6200 8.6036 40 1 2.3156 -4.3075 7.8355 41 1 1.6502 -4.7185 10.2325 42 1 2.2465 -3.0636 9.9498 43 1 4.1454 -5.7158 13.8540 44 1 5.6911 -4.1271 11.4657 45 1 4.9402 -2.6695 10.7685 46 1 6.3671 -3.7145 9.0718 47 1 5.5562 -5.2812 9.3100 48 1 4.6721 -3.4348 2.5961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:27 Heat of formation + Delta-G solvation = 24.548841 kcal Electronic energy + Delta-G solvation = -23905.684411 eV Core-core repulsion = 20582.528178 eV Total energy + Delta-G solvation = -3323.156233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15682 -37.63795 -34.81890 -33.35163 -31.87381 -31.64090 -29.88933 -29.07181 -28.84219 -27.83460 -27.82739 -26.93011 -23.69370 -23.15436 -21.65133 -21.46567 -19.54468 -18.33868 -17.38580 -16.60783 -16.08332 -14.97024 -14.63462 -14.51777 -14.26894 -14.15926 -13.66270 -13.42350 -13.40317 -13.32553 -13.04354 -12.91154 -12.74441 -12.74207 -12.57603 -12.51165 -12.39007 -12.12439 -11.88305 -11.60111 -11.41371 -11.12807 -10.94126 -10.93014 -10.76698 -10.39459 -10.24770 -10.09056 -10.08357 -9.83836 -9.59946 -9.40676 -9.28489 -9.06660 -8.72816 -8.54939 -7.31450 -6.18416 -4.10112 1.07543 1.43397 2.17223 2.38665 2.39075 3.04422 3.18788 3.21373 3.31107 3.31917 3.38694 3.42814 4.20925 4.31431 4.70518 4.90001 5.01723 5.08719 5.24464 5.28270 5.28666 5.33145 5.33694 5.34298 5.36142 5.46745 5.52908 5.73247 5.84820 5.99219 6.01223 6.08090 6.11429 6.12189 6.28748 6.35502 6.47319 6.54922 6.61473 6.74345 6.80248 6.91181 6.98995 7.29640 7.32292 7.56164 7.61297 7.67109 7.71605 7.87183 8.28069 8.31864 8.87512 9.46058 10.90917 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.001935 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.366345 B =14466.288632 C =15032.904911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.145 2.855 3 C -0.452 4.452 4 C -0.451 4.451 5 C -0.434 4.434 6 C -0.100 4.100 7 C -0.141 4.141 8 C -0.009 4.009 9 C -0.238 4.238 10 C 0.421 3.579 11 N -0.708 5.708 12 C 0.159 3.841 13 H 0.073 0.927 14 C -0.120 4.120 15 C -0.013 4.013 16 C -0.492 4.492 17 C 0.077 3.923 18 N -0.887 5.887 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.014 3.986 24 C -0.114 4.114 25 N -0.553 5.553 26 C 0.180 3.820 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.401 0.599 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.062 0.938 45 H 0.006 0.994 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 9.745 -24.669 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.331 2.669 3 C -0.559 4.559 4 C -0.559 4.559 5 C -0.470 4.470 6 C -0.101 4.101 7 C -0.147 4.147 8 C -0.034 4.034 9 C -0.263 4.263 10 C 0.184 3.816 11 N -0.335 5.335 12 C 0.055 3.945 13 H 0.091 0.909 14 C -0.159 4.159 15 C -0.052 4.052 16 C -0.511 4.511 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.024 4.024 24 C -0.152 4.152 25 N -0.270 5.270 26 C 0.020 3.980 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.236 0.764 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.454 8.975 -24.183 26.025 hybrid contribution -1.127 -0.329 0.610 1.323 sum -4.581 8.646 -23.573 25.523 Atomic orbital electron populations 1.26120 1.20424 1.04824 1.04595 0.76843 0.65734 0.64547 0.59787 1.26120 1.06660 1.18568 1.04591 1.26107 1.06652 1.08408 1.14704 1.35616 1.03012 1.03408 1.04984 1.20784 0.97820 0.97135 0.94367 1.16766 1.05146 1.02472 0.90284 1.21318 0.95393 0.96176 0.90537 1.21478 1.03480 1.00823 1.00567 1.18617 0.88246 0.88039 0.86735 1.45274 1.45904 1.38483 1.03844 1.21183 0.95725 0.99198 0.78354 0.90869 1.22048 0.95115 1.00111 0.98648 1.19726 0.96386 0.96720 0.92320 1.20003 0.94917 1.33805 1.02371 1.24851 0.96851 0.95418 0.95499 1.69825 1.32272 1.40516 1.09845 0.86657 0.85004 0.79631 0.77051 1.20409 1.21575 1.19185 1.19337 0.96970 0.95133 0.90978 1.21929 0.94875 1.00774 0.97652 1.67225 1.30414 1.31711 0.97680 1.22449 0.90235 0.89120 0.96161 0.90977 0.90791 0.90968 0.90976 0.90795 0.90980 0.90959 0.90778 0.90961 0.85034 0.84097 0.76366 0.92556 0.94538 0.94929 0.96336 0.92487 0.91985 0.97556 0.94384 0.92505 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -2.45 8.65 101.05 0.87 -1.58 16 2 Si 1.15 5.96 14.26 -169.99 -2.42 3.53 16 3 C -0.45 -2.41 8.65 101.05 0.87 -1.53 16 4 C -0.45 -2.32 8.65 101.05 0.87 -1.44 16 5 C -0.43 -4.68 12.15 29.55 0.36 -4.33 16 6 C -0.10 -1.35 13.27 -38.84 -0.52 -1.86 16 7 C -0.14 -2.03 5.74 -106.83 -0.61 -2.64 16 8 C -0.01 -0.13 9.89 -38.94 -0.39 -0.51 16 9 C -0.24 -3.66 8.76 -39.29 -0.34 -4.00 16 10 C 0.42 6.92 7.62 -155.02 -1.18 5.73 16 11 N -0.71 -11.63 5.24 -53.96 -0.28 -11.92 16 12 C 0.16 2.87 2.04 -67.98 -0.14 2.73 16 13 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 14 C -0.12 -2.33 5.39 -26.64 -0.14 -2.48 16 15 C -0.01 -0.30 5.59 -27.48 -0.15 -0.45 16 16 C -0.49 -12.36 5.51 -98.92 -0.55 -12.90 16 17 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -24.78 12.73 55.43 0.71 -24.07 16 19 Si 0.89 20.62 27.27 -169.99 -4.64 15.98 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.00 6.46 56.52 0.37 -5.64 16 23 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 24 C -0.11 -2.24 5.40 -26.63 -0.14 -2.39 16 25 N -0.55 -8.92 10.38 -12.12 -0.13 -9.04 16 26 C 0.18 2.59 10.91 -17.15 -0.19 2.40 16 27 H 0.07 0.42 7.96 -51.93 -0.41 0.01 16 28 H 0.07 0.30 7.96 -51.93 -0.41 -0.11 16 29 H 0.07 0.42 7.96 -51.93 -0.41 0.01 16 30 H 0.07 0.41 7.96 -51.93 -0.41 -0.01 16 31 H 0.07 0.30 7.96 -51.93 -0.41 -0.12 16 32 H 0.07 0.41 7.96 -51.93 -0.41 0.00 16 33 H 0.07 0.40 7.96 -51.92 -0.41 -0.02 16 34 H 0.07 0.29 7.96 -51.93 -0.41 -0.13 16 35 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 36 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.14 2.12 6.06 -52.49 -0.32 1.80 16 38 H 0.40 6.26 8.72 -40.82 -0.36 5.91 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.66 7.64 -51.93 -0.40 0.26 16 41 H 0.03 0.72 4.78 -51.93 -0.25 0.48 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 1.61 7.07 -51.93 -0.37 1.25 16 45 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -29.50 397.73 -10.27 -39.78 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.87 Total: 2.90 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.63 Total: -23.15 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.30 Total: -45.03 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -7.06 Total: 19.51 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.50 -10.27 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.325 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds