Wall clock time and date at job start Tue Mar 31 2020 16:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86299 * 109.47561 * 2 1 4 4 C 1.86306 * 109.47055 * 239.99990 * 2 1 3 5 5 C 1.90004 * 109.47274 * 120.00045 * 2 1 3 6 6 C 3.07404 * 109.47177 * 120.00191 * 2 1 3 7 7 C 4.50603 * 109.47153 * 120.00084 * 2 1 3 8 8 C 1.40167 * 120.47638 * 278.34862 * 7 6 5 9 9 C 1.38002 * 118.38393 * 179.97438 * 8 7 6 10 10 C 1.39265 * 119.24656 * 0.02562 * 9 8 7 11 11 N 1.38898 * 119.55365 * 179.97438 * 10 9 8 12 12 C 1.46494 * 119.99949 * 359.97438 * 11 10 9 13 13 H 1.09000 * 109.35816 * 324.81804 * 12 11 10 14 14 C 1.52951 * 109.42604 * 84.64139 * 12 11 10 15 15 C 1.53235 * 109.41904 * 183.69258 * 14 12 11 16 16 C 1.51272 * 108.53109 * 305.37781 * 15 14 12 17 17 C 1.37879 * 120.84971 * 231.32370 * 16 15 14 18 18 N 1.31513 * 120.00315 * 180.02562 * 17 16 15 19 19 Si 1.86801 * 119.99728 * 0.02562 * 17 16 15 20 20 H 1.48503 * 109.47130 * 90.00287 * 19 17 16 21 21 H 1.48500 * 109.47388 * 210.00134 * 19 17 16 22 22 H 1.48500 * 109.47438 * 330.00008 * 19 17 16 23 23 C 1.51265 * 118.30125 * 51.34935 * 16 15 14 24 24 C 1.52965 * 109.41278 * 205.00228 * 12 11 10 25 25 N 1.32460 * 120.89459 * 0.26407 * 10 9 8 26 26 C 1.31787 * 121.76605 * 359.44388 * 25 10 9 27 27 H 1.09003 * 109.47130 * 300.00090 * 1 2 3 28 28 H 1.09000 * 109.46882 * 59.99910 * 1 2 3 29 29 H 1.08996 * 109.47664 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47560 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47096 * 299.99959 * 3 2 1 32 32 H 1.09003 * 109.46972 * 59.99813 * 3 2 1 33 33 H 1.09008 * 109.46767 * 299.99938 * 4 2 1 34 34 H 1.08996 * 109.46849 * 59.99965 * 4 2 1 35 35 H 1.09003 * 109.46995 * 180.02562 * 4 2 1 36 36 H 1.08003 * 120.80772 * 359.95961 * 8 7 6 37 37 H 1.07999 * 120.37906 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99984 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47552 * 63.70848 * 14 12 11 40 40 H 1.09003 * 109.48446 * 303.67487 * 14 12 11 41 41 H 1.08995 * 109.62638 * 185.66368 * 15 14 12 42 42 H 1.09002 * 109.78512 * 65.17863 * 15 14 12 43 43 H 0.96999 * 119.99963 * 180.02562 * 18 17 16 44 44 H 1.09007 * 109.62320 * 188.93382 * 23 16 15 45 45 H 1.09002 * 109.78860 * 68.45837 * 23 16 15 46 46 H 1.09002 * 109.48383 * 56.31406 * 24 12 11 47 47 H 1.08999 * 109.47882 * 296.28769 * 24 12 11 48 48 H 1.07998 * 119.66802 * 180.31057 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4963 -0.8957 1.5514 6 6 2.8876 -1.4492 2.5099 7 6 3.3650 -2.1242 3.6791 8 6 2.8953 -1.7638 4.9496 9 6 3.3840 -2.4432 6.0468 10 6 4.3208 -3.4563 5.8580 11 7 4.8174 -4.1440 6.9579 12 6 4.3559 -3.8014 8.3054 13 1 4.1804 -2.7273 8.3650 14 6 3.0533 -4.5463 8.6016 15 6 2.5221 -4.1179 9.9736 16 6 3.6117 -4.3351 11.0002 17 6 3.3617 -5.0407 12.1581 18 7 4.3212 -5.2191 13.0396 19 14 1.6600 -5.7433 12.4747 20 1 1.5795 -7.1165 11.9152 21 1 1.4076 -5.7891 13.9373 22 1 0.6401 -4.8827 11.8232 23 6 4.9824 -3.7578 10.7243 24 6 5.4243 -4.1993 9.3252 25 7 4.7489 -3.7692 4.6441 26 6 4.3035 -3.1488 3.5701 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1208 2.2703 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9060 -1.5211 34 1 2.1206 -0.3644 -2.4111 35 1 3.5740 -0.8787 -1.5210 36 1 2.1687 -0.9734 5.0670 37 1 3.0446 -2.1917 7.0408 38 1 5.4698 -4.8510 6.8338 39 1 3.2410 -5.6200 8.6036 40 1 2.3156 -4.3075 7.8355 41 1 1.6502 -4.7185 10.2325 42 1 2.2465 -3.0636 9.9498 43 1 4.1454 -5.7158 13.8540 44 1 5.6911 -4.1271 11.4657 45 1 4.9402 -2.6695 10.7685 46 1 6.3671 -3.7145 9.0718 47 1 5.5562 -5.2812 9.3100 48 1 4.6721 -3.4348 2.5961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:27 Heat of formation + Delta-G solvation = 13.169399 kcal Electronic energy + Delta-G solvation = -23906.177861 eV Core-core repulsion = 20582.528178 eV Total energy + Delta-G solvation = -3323.649683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34195 -39.15559 -36.24644 -34.66476 -33.39164 -32.89232 -31.56939 -30.27118 -29.37833 -28.48696 -28.21019 -28.20374 -24.94874 -24.48937 -23.26082 -23.10236 -21.16418 -19.38615 -18.67365 -17.99942 -17.67656 -16.43211 -15.99508 -15.85866 -15.54579 -15.33707 -14.96924 -14.51478 -14.26254 -14.11176 -14.06080 -13.99685 -13.81492 -13.80607 -13.58647 -13.35613 -13.11249 -13.07972 -12.94761 -12.91010 -12.78485 -12.62068 -12.44968 -12.03933 -11.89766 -11.81931 -11.74062 -11.51820 -11.06532 -10.92500 -10.78587 -10.70099 -10.62300 -10.55433 -10.35147 -10.32518 -8.52518 -8.18333 -6.12297 -0.01871 0.29786 1.37076 1.41159 1.48787 1.51996 1.78261 1.82884 2.12769 2.39511 2.51219 2.51414 2.57453 3.10710 3.13280 3.58795 3.84376 3.94405 3.98076 4.12914 4.14241 4.33904 4.46686 4.68596 4.75769 4.86681 4.91264 4.91638 4.94011 4.94502 4.96141 4.97253 4.97469 5.00424 5.04672 5.05692 5.18388 5.23179 5.28031 5.53746 5.56189 5.62968 5.65160 5.74237 5.75019 5.75731 5.81016 6.02739 6.32239 6.58727 6.75028 6.94313 7.11998 7.45836 8.92260 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.001935 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.366345 B =14466.288632 C =15032.904911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.200 2.800 3 C -0.460 4.460 4 C -0.458 4.458 5 C -0.408 4.408 6 C -0.166 4.166 7 C -0.138 4.138 8 C -0.012 4.012 9 C -0.244 4.244 10 C 0.404 3.596 11 N -0.709 5.709 12 C 0.175 3.825 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.016 4.016 16 C -0.498 4.498 17 C 0.022 3.978 18 N -0.929 5.929 19 Si 0.939 3.061 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.253 1.253 23 C 0.010 3.990 24 C -0.103 4.103 25 N -0.565 5.565 26 C 0.170 3.830 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.404 0.596 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.027 0.973 43 H 0.262 0.738 44 H 0.029 0.971 45 H 0.006 0.994 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 11.152 -28.085 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.382 2.618 3 C -0.567 4.567 4 C -0.566 4.566 5 C -0.439 4.439 6 C -0.167 4.167 7 C -0.143 4.143 8 C -0.037 4.037 9 C -0.269 4.269 10 C 0.168 3.832 11 N -0.337 5.337 12 C 0.070 3.930 13 H 0.095 0.905 14 C -0.151 4.151 15 C -0.054 4.054 16 C -0.517 4.517 17 C -0.176 4.176 18 N -0.569 5.569 19 Si 0.765 3.235 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.177 1.177 23 C -0.028 4.028 24 C -0.141 4.141 25 N -0.283 5.283 26 C 0.010 3.990 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.240 0.760 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.046 10.377 -27.610 29.924 hybrid contribution -0.645 -0.621 1.466 1.717 sum -5.691 9.756 -26.144 28.479 Atomic orbital electron populations 1.26209 1.20537 1.04783 1.05295 0.76319 0.64922 0.63441 0.57164 1.26200 1.06516 1.18739 1.05291 1.26170 1.06588 1.08422 1.15402 1.37516 1.00297 1.01216 1.04901 1.21092 1.00464 0.99504 0.95632 1.16987 1.04369 1.01953 0.90997 1.21588 0.95537 0.96407 0.90203 1.21549 1.03501 1.00836 1.01046 1.18721 0.89045 0.88696 0.86783 1.44951 1.46527 1.39085 1.03179 1.20818 0.94279 0.99063 0.78818 0.90493 1.21916 0.96205 0.99543 0.97457 1.19746 0.95430 0.97290 0.92911 1.20617 0.96237 1.32329 1.02562 1.25593 0.99762 0.96525 0.95759 1.69962 1.34088 1.42335 1.10520 0.85839 0.81863 0.79147 0.76630 1.20287 1.22018 1.17668 1.19291 0.96052 0.94903 0.92548 1.21703 0.96264 1.00224 0.95920 1.67206 1.30847 1.32257 0.97959 1.22830 0.90396 0.89185 0.96544 0.91414 0.89030 0.91410 0.91334 0.89026 0.91423 0.91289 0.89030 0.91198 0.83063 0.83889 0.76038 0.93579 0.92824 0.95046 0.95415 0.92852 0.95200 0.97559 0.92712 0.93410 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -3.66 8.65 113.37 0.98 -2.68 16 2 Si 1.20 9.02 14.26 68.60 0.98 10.00 16 3 C -0.46 -3.56 8.65 113.37 0.98 -2.58 16 4 C -0.46 -3.33 8.65 113.37 0.98 -2.35 16 5 C -0.41 -8.03 12.15 74.32 0.90 -7.13 16 6 C -0.17 -4.27 13.27 30.01 0.40 -3.87 16 7 C -0.14 -3.83 5.74 -21.29 -0.12 -3.96 16 8 C -0.01 -0.33 9.89 22.68 0.22 -0.10 16 9 C -0.24 -7.21 8.76 22.46 0.20 -7.01 16 10 C 0.40 12.89 7.62 133.11 1.01 13.91 16 11 N -0.71 -22.66 5.24 -324.62 -1.70 -24.36 16 12 C 0.17 6.13 2.04 44.96 0.09 6.22 16 13 H 0.08 2.68 6.44 -2.39 -0.02 2.66 16 14 C -0.11 -4.21 5.39 30.66 0.17 -4.05 16 15 C -0.02 -0.67 5.59 30.11 0.17 -0.51 16 16 C -0.50 -25.18 5.51 -16.17 -0.09 -25.27 16 17 C 0.02 1.18 5.46 84.66 0.46 1.64 16 18 N -0.93 -53.62 12.73 21.45 0.27 -53.35 16 19 Si 0.94 42.56 27.27 68.60 1.87 44.43 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.25 -10.74 6.46 99.48 0.64 -10.10 16 23 C 0.01 0.48 5.97 30.10 0.18 0.66 16 24 C -0.10 -4.04 5.40 30.66 0.17 -3.87 16 25 N -0.57 -17.80 10.38 -192.26 -1.99 -19.79 16 26 C 0.17 4.72 10.91 84.97 0.93 5.65 16 27 H 0.07 0.62 7.96 -2.39 -0.02 0.60 16 28 H 0.09 0.43 7.96 -2.39 -0.02 0.41 16 29 H 0.07 0.62 7.96 -2.39 -0.02 0.60 16 30 H 0.07 0.60 7.96 -2.39 -0.02 0.58 16 31 H 0.09 0.41 7.96 -2.39 -0.02 0.39 16 32 H 0.07 0.61 7.96 -2.39 -0.02 0.59 16 33 H 0.07 0.57 7.96 -2.38 -0.02 0.55 16 34 H 0.09 0.38 7.96 -2.39 -0.02 0.36 16 35 H 0.07 0.57 7.96 -2.39 -0.02 0.55 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 4.09 6.06 -2.91 -0.02 4.07 16 38 H 0.40 12.35 8.72 -92.71 -0.81 11.54 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.84 7.64 -2.39 -0.02 1.82 16 41 H 0.03 1.35 4.78 -2.39 -0.01 1.33 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.03 1.60 7.07 -2.38 -0.02 1.58 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.17 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -64.36 397.73 7.14 -57.22 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.08 Total: 21.13 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 7.63 Total: -35.28 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.42 Total: -97.50 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.85 Total: 54.43 kcal Total: -64.36 7.14 -57.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.391 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds