Wall clock time and date at job start Tue Mar 31 2020 16:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48503 * 109.47510 * 264.70736 * 3 2 1 5 5 H 1.48503 * 109.46980 * 24.70667 * 3 2 1 6 6 H 1.48504 * 109.47319 * 144.70481 * 3 2 1 7 7 C 1.38806 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99992 * 356.56672 * 7 2 1 9 9 N 1.36935 * 120.00547 * 176.57158 * 7 2 1 10 10 C 1.46493 * 120.00620 * 183.99133 * 9 7 2 11 11 C 1.52999 * 109.47487 * 185.11160 * 10 9 7 12 12 C 1.52997 * 115.54988 * 65.45720 * 11 10 9 13 13 C 1.53005 * 109.47232 * 39.92335 * 12 11 10 14 14 N 1.46501 * 109.46713 * 174.48455 * 13 12 11 15 15 C 1.34785 * 119.99521 * 184.42916 * 14 13 12 16 16 O 1.21556 * 119.99808 * 354.47771 * 15 14 13 17 17 C 1.47846 * 119.99939 * 174.47400 * 15 14 13 18 18 C 1.39589 * 120.18748 * 0.02562 * 17 15 14 19 19 C 1.37801 * 119.78706 * 179.97438 * 18 17 15 20 20 C 1.38662 * 120.41047 * 0.02562 * 19 18 17 21 21 C 1.38370 * 120.07981 * 359.74154 * 20 19 18 22 22 C 1.38235 * 119.99735 * 0.51360 * 21 20 19 23 23 C 1.51395 * 109.74664 * 179.84392 * 21 20 19 24 24 C 1.54338 * 105.23146 * 343.13396 * 23 21 20 25 25 C 1.51428 * 130.21871 * 179.97438 * 20 19 18 26 26 C 1.53003 * 117.51703 * 211.15649 * 11 10 9 27 27 C 1.52997 * 117.49837 * 279.78839 * 11 10 9 28 28 H 0.96999 * 120.00101 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99674 * 3.99587 * 9 7 2 30 30 H 1.09000 * 109.47318 * 65.10414 * 10 9 7 31 31 H 1.09003 * 109.47251 * 305.11027 * 10 9 7 32 32 H 1.09004 * 109.47443 * 279.92219 * 12 11 10 33 33 H 1.09002 * 109.47189 * 159.92627 * 12 11 10 34 34 H 1.08998 * 109.47019 * 54.48144 * 13 12 11 35 35 H 1.08998 * 109.46868 * 294.47575 * 13 12 11 36 36 H 0.96995 * 120.00855 * 4.42705 * 14 13 12 37 37 H 1.08004 * 120.10686 * 0.02562 * 18 17 15 38 38 H 1.08007 * 119.79210 * 179.97438 * 19 18 17 39 39 H 1.07992 * 119.95607 * 179.76218 * 22 21 20 40 40 H 1.09002 * 110.44473 * 224.10801 * 23 21 20 41 41 H 1.09003 * 110.19353 * 102.03193 * 23 21 20 42 42 H 1.09003 * 110.81778 * 267.98239 * 24 23 21 43 43 H 1.08995 * 110.98793 * 144.52040 * 24 23 21 44 44 H 1.09001 * 110.29827 * 316.14467 * 25 20 19 45 45 H 1.09002 * 110.30068 * 78.28307 * 25 20 19 46 46 H 1.08997 * 117.49573 * 214.97022 * 26 11 10 47 47 H 1.08994 * 117.49790 * 359.97438 * 26 11 10 48 48 H 1.09002 * 117.49843 * 359.96837 * 27 11 10 49 49 H 1.08999 * 117.50204 * 144.99589 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6095 1.9819 -1.3941 5 1 1.3960 2.6824 0.5852 6 1 3.4873 1.4751 0.8090 7 6 2.0103 -1.2021 -0.0005 8 1 1.4717 -2.1367 0.0551 9 7 3.3778 -1.2031 -0.0715 10 6 4.1058 -2.4713 -0.1603 11 6 5.6104 -2.2011 -0.0986 12 6 6.1243 -1.6283 1.2238 13 6 5.4085 -2.3143 2.3892 14 7 5.9921 -1.8624 3.6547 15 6 5.5786 -2.4025 4.8183 16 8 4.6531 -3.1904 4.8277 17 6 6.2509 -2.0366 6.0833 18 6 7.3138 -1.1318 6.0770 19 6 7.9341 -0.7962 7.2609 20 6 7.5092 -1.3522 8.4581 21 6 6.4530 -2.2460 8.4715 22 6 5.8269 -2.5938 7.2891 23 6 6.1905 -2.7064 9.8896 24 6 7.4637 -2.3347 10.6788 25 6 8.0214 -1.1460 9.8681 26 6 6.5319 -3.1556 -0.8606 27 6 6.2981 -1.7370 -1.3841 28 1 -0.4850 0.8400 -0.0004 29 1 3.8645 -0.3641 -0.0628 30 1 3.8634 -2.9642 -1.1017 31 1 3.8178 -3.1146 0.6713 32 1 5.9275 -0.5567 1.2567 33 1 7.1973 -1.8031 1.3029 34 1 5.5238 -3.3946 2.3011 35 1 4.3492 -2.0588 2.3659 36 1 6.6759 -1.1745 3.6553 37 1 7.6484 -0.6955 5.1474 38 1 8.7568 -0.0965 7.2562 39 1 5.0052 -3.2944 7.2999 40 1 6.0302 -3.7842 9.9165 41 1 5.3255 -2.1856 10.3003 42 1 8.1710 -3.1640 10.6861 43 1 7.2174 -2.0289 11.6956 44 1 9.1113 -1.1581 9.8801 45 1 7.6485 -0.2047 10.2721 46 1 7.5042 -3.3755 -0.4198 47 1 6.0662 -3.9766 -1.4057 48 1 5.6787 -1.6248 -2.2739 49 1 7.1167 -1.0238 -1.2878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168077012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:56 Heat of formation + Delta-G solvation = 16.307341 kcal Electronic energy + Delta-G solvation = -27043.191567 eV Core-core repulsion = 23356.471508 eV Total energy + Delta-G solvation = -3686.720059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64978 -39.32951 -38.34275 -35.77394 -34.86003 -34.03867 -31.74281 -31.15287 -30.62878 -29.00717 -27.72439 -26.23043 -24.25967 -22.68816 -22.45276 -22.14164 -21.80415 -21.16883 -20.11946 -18.81782 -17.72971 -17.23145 -16.39786 -15.99218 -15.71787 -15.43902 -15.22204 -15.01129 -14.66538 -14.51921 -13.96985 -13.83284 -13.63662 -13.35505 -13.25068 -13.20305 -12.76751 -12.58530 -12.33774 -12.17956 -12.00449 -11.81133 -11.60171 -11.57222 -11.45164 -11.24414 -11.12445 -11.07776 -10.88443 -10.71194 -10.23246 -9.92849 -9.82712 -9.56051 -9.45747 -9.12613 -8.98440 -8.83354 -8.75514 -7.17762 -5.72015 -3.06959 0.64767 1.09899 2.78945 3.15741 3.39604 3.41935 3.47133 3.68195 3.94038 4.01621 4.17176 4.57910 4.60280 4.63159 4.65451 4.78958 4.86642 4.90169 4.94716 5.02890 5.06871 5.22088 5.26134 5.30863 5.36741 5.42292 5.43409 5.52523 5.57519 5.65412 5.68285 5.71710 5.75208 5.79206 5.82797 5.88988 6.03274 6.08613 6.10995 6.21905 6.28224 6.29579 6.34034 6.40185 6.50685 6.62789 6.69842 6.75615 7.53686 8.05197 8.26912 8.47361 9.26470 9.98522 10.19157 11.46606 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.002619 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.893653 B =10688.223257 C =11666.303508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.189 3.811 11 C -0.127 4.127 12 C -0.086 4.086 13 C 0.118 3.882 14 N -0.724 5.724 15 C 0.555 3.445 16 O -0.530 6.530 17 C -0.128 4.128 18 C -0.087 4.087 19 C -0.115 4.115 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.048 4.048 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.085 4.085 26 C -0.171 4.171 27 C -0.170 4.170 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.896 -3.172 17.168 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.394 5.394 10 C 0.062 3.938 11 C -0.128 4.128 12 C -0.123 4.123 13 C -0.004 4.004 14 N -0.376 5.376 15 C 0.341 3.659 16 O -0.407 6.407 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.133 4.133 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.066 4.066 23 C -0.120 4.120 24 C -0.158 4.158 25 C -0.122 4.122 26 C -0.209 4.209 27 C -0.207 4.207 28 H 0.069 0.931 29 H 0.192 0.808 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.230 0.770 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.974 -3.852 17.145 28.136 hybrid contribution 0.874 1.729 -0.193 1.947 sum 22.848 -2.122 16.952 28.529 Atomic orbital electron populations 1.69702 1.05089 1.25745 1.57680 1.24652 0.95188 0.97110 1.02159 0.86591 0.79233 0.85133 0.77783 1.21070 1.21861 1.20475 1.19057 0.80720 0.94780 1.42512 0.89225 1.42553 1.04043 1.02173 1.90645 1.20223 0.85328 0.89407 0.98811 1.21652 0.95540 1.03773 0.91882 1.21196 0.98601 1.00391 0.92157 1.21536 0.99524 0.98966 0.80396 1.45930 1.42988 1.42172 1.06512 1.18200 0.83062 0.81150 0.83446 1.90808 1.27993 1.35110 1.86835 1.19868 0.98643 1.00813 0.93795 1.21184 0.94794 0.96293 0.98286 1.20530 1.00848 1.00879 0.91088 1.20834 0.95924 0.96008 0.95016 1.20550 0.96700 0.98447 0.94964 1.20731 0.98398 0.97719 0.89792 1.21063 0.98675 1.01778 0.90451 1.22295 0.96855 0.97904 0.98746 1.21115 1.00946 0.99416 0.90714 1.23026 1.00132 0.93691 1.04022 1.22967 1.02700 0.97049 0.97995 0.93118 0.80814 0.95647 0.94371 0.91018 0.91861 0.91266 0.89181 0.76986 0.85434 0.85647 0.84705 0.90383 0.89953 0.90862 0.90363 0.90483 0.89881 0.89174 0.88722 0.88401 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.00 13.97 55.49 0.78 -29.22 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.48 27.55 -169.99 -4.68 17.80 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.67 6.79 56.52 0.38 -6.29 16 7 C -0.24 -6.94 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 9 N -0.75 -17.80 5.32 -59.91 -0.32 -18.12 16 10 C 0.19 3.69 5.35 -4.05 -0.02 3.67 16 11 C -0.13 -1.91 1.83 -154.51 -0.28 -2.19 16 12 C -0.09 -1.16 5.38 -26.73 -0.14 -1.30 16 13 C 0.12 1.83 4.62 -4.04 -0.02 1.81 16 14 N -0.72 -9.79 5.50 -61.25 -0.34 -10.13 16 15 C 0.55 8.64 7.77 -12.33 -0.10 8.54 16 16 O -0.53 -10.46 16.36 5.32 0.09 -10.38 16 17 C -0.13 -1.63 5.87 -105.01 -0.62 -2.25 16 18 C -0.09 -0.86 9.54 -39.24 -0.37 -1.23 16 19 C -0.12 -1.01 10.02 -39.58 -0.40 -1.41 16 20 C -0.08 -0.70 6.14 -104.06 -0.64 -1.34 16 21 C -0.11 -1.08 6.13 -104.23 -0.64 -1.72 16 22 C -0.05 -0.59 9.59 -39.14 -0.38 -0.96 16 23 C -0.08 -0.61 6.77 -26.84 -0.18 -0.79 16 24 C -0.12 -0.68 7.08 -25.34 -0.18 -0.86 16 25 C -0.09 -0.53 6.77 -26.84 -0.18 -0.71 16 26 C -0.17 -2.10 9.87 -26.73 -0.26 -2.37 16 27 C -0.17 -2.28 9.97 -26.73 -0.27 -2.55 16 28 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 29 H 0.36 8.35 5.70 -40.82 -0.23 8.11 16 30 H 0.03 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.04 0.78 6.77 -51.93 -0.35 0.43 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.76 7.14 -51.93 -0.37 1.39 16 36 H 0.40 4.04 6.54 -40.82 -0.27 3.77 16 37 H 0.13 0.95 6.43 -52.48 -0.34 0.61 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 47 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -35.11 396.69 -11.29 -46.40 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.86 Total: 10.38 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -4.93 Total: -12.71 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.12 Total: -57.47 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.68 Total: 17.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.11 -11.29 -46.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168077012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.704 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds