Wall clock time and date at job start Tue Mar 31 2020 16:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86795 * 120.00043 * 2 1 4 4 H 1.48504 * 109.47245 * 239.99937 * 3 2 1 5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99856 * 3 2 1 7 7 C 1.39672 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.40912 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.38961 * 126.93650 * 21.73892 * 9 7 2 11 11 N 1.35655 * 109.23939 * 180.02562 * 10 9 7 12 12 H 0.97008 * 124.69591 * 179.97438 * 11 10 9 13 13 C 1.38134 * 110.60814 * 0.05824 * 11 10 9 14 14 C 1.39196 * 132.74748 * 179.97438 * 13 11 10 15 15 C 1.37942 * 120.13850 * 180.02562 * 14 13 11 16 16 C 1.38501 * 120.70245 * 359.97438 * 15 14 13 17 17 C 1.38688 * 120.15313 * 0.02562 * 16 15 14 18 18 N 1.39406 * 120.22448 * 179.72792 * 17 16 15 19 19 C 1.46505 * 120.00399 * 5.70836 * 18 17 16 20 20 C 1.52997 * 109.47304 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47447 * 64.99822 * 20 19 18 22 22 C 1.42893 * 113.99905 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47076 * 270.00102 * 22 21 20 24 24 C 1.53002 * 109.47127 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47210 * 59.99725 * 24 23 22 26 26 C 1.53001 * 109.47300 * 300.00168 * 25 24 23 27 27 C 1.52999 * 109.46816 * 150.00339 * 22 21 20 28 28 C 1.39806 * 119.54484 * 359.97438 * 17 16 15 29 29 H 0.97007 * 120.00261 * 0.02562 * 1 2 3 30 30 H 1.08004 * 125.37766 * 0.08002 * 10 9 7 31 31 H 1.08008 * 119.93339 * 0.02562 * 14 13 11 32 32 H 1.07994 * 119.65444 * 180.02562 * 15 14 13 33 33 H 1.08000 * 119.92043 * 179.97438 * 16 15 14 34 34 H 0.96998 * 119.99888 * 185.71137 * 18 17 16 35 35 H 1.09000 * 109.46918 * 300.00291 * 19 18 17 36 36 H 1.09000 * 109.46799 * 59.99780 * 19 18 17 37 37 H 1.09001 * 109.47089 * 185.00054 * 20 19 18 38 38 H 1.09000 * 109.46747 * 304.99636 * 20 19 18 39 39 H 1.08996 * 109.47596 * 29.99869 * 22 21 20 40 40 H 1.09004 * 109.47195 * 299.99898 * 23 22 21 41 41 H 1.09001 * 109.47124 * 59.99841 * 23 22 21 42 42 H 1.09004 * 109.46662 * 299.99811 * 24 23 22 43 43 H 1.09001 * 109.47180 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47227 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.47238 * 60.00439 * 25 24 23 46 46 H 1.08996 * 109.46717 * 299.99889 * 26 25 24 47 47 H 1.09007 * 109.46849 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47287 * 299.99367 * 27 22 21 49 49 H 1.08994 * 109.47325 * 59.99967 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 3.0986 1.6964 -1.2125 5 1 1.2798 2.7464 -0.0006 6 1 3.0985 1.6964 1.2125 7 6 2.0092 -1.2096 0.0005 8 1 3.0891 -1.2097 0.0001 9 6 1.3045 -2.4299 0.0005 10 6 -0.0063 -2.6373 -0.4113 11 7 -0.3211 -3.9479 -0.2579 12 1 -1.1816 -4.3384 -0.4769 13 6 0.7528 -4.6489 0.2552 14 6 0.9350 -5.9884 0.5874 15 6 2.1441 -6.4182 1.0935 16 6 3.1900 -5.5290 1.2775 17 6 3.0310 -4.1899 0.9535 18 7 4.0808 -3.2925 1.1435 19 6 5.3950 -3.7817 1.5679 20 6 6.3595 -2.6016 1.7019 21 8 5.9178 -1.7425 2.7550 22 6 6.7534 -0.6024 2.9640 23 6 7.8412 -0.9473 3.9832 24 6 8.7355 0.2737 4.2075 25 6 7.8907 1.4344 4.7363 26 6 6.8029 1.7794 3.7171 27 6 5.9089 0.5588 3.4927 28 6 1.8091 -3.7452 0.4400 29 1 -0.4851 0.8401 -0.0004 30 1 -0.6695 -1.8755 -0.7940 31 1 0.1280 -6.6926 0.4485 32 1 2.2771 -7.4592 1.3481 33 1 4.1311 -5.8791 1.6750 34 1 3.9412 -2.3443 0.9947 35 1 5.3018 -4.2854 2.5300 36 1 5.7785 -4.4826 0.8264 37 1 7.3584 -2.9730 1.9309 38 1 6.3848 -2.0449 0.7652 39 1 7.2175 -0.3141 2.0208 40 1 7.3771 -1.2354 4.9264 41 1 8.4427 -1.7745 3.6066 42 1 9.1996 0.5622 3.2643 43 1 9.5102 0.0281 4.9339 44 1 8.5279 2.3042 4.8966 45 1 7.4266 1.1459 5.6795 46 1 7.2671 2.0679 2.7741 47 1 6.2013 2.6067 4.0938 48 1 5.1339 0.8046 2.7666 49 1 5.4448 0.2706 4.4359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171479955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:49 Heat of formation + Delta-G solvation = -18.766906 kcal Electronic energy + Delta-G solvation = -28201.031723 eV Core-core repulsion = 24512.790730 eV Total energy + Delta-G solvation = -3688.240993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.60913 -39.21075 -37.08051 -36.05111 -34.28934 -33.16587 -30.94720 -30.78578 -29.60195 -28.41405 -27.77492 -26.61271 -24.44373 -22.96987 -22.53792 -22.15557 -20.97081 -20.16516 -19.79570 -19.35233 -17.46641 -16.86312 -15.83184 -15.68755 -15.43017 -15.25017 -14.77069 -14.61018 -14.34664 -14.14659 -14.12600 -13.56448 -13.40761 -13.15510 -12.91758 -12.78415 -12.45765 -12.33750 -12.30983 -12.08652 -11.43411 -11.34204 -11.23505 -11.16906 -11.09939 -11.06250 -10.73895 -10.67117 -10.60099 -10.51305 -10.38158 -10.32606 -9.76957 -9.69791 -9.34372 -9.21701 -8.96706 -7.32800 -6.90583 -6.42112 -5.93227 -3.92508 2.56318 2.85122 3.14211 3.17980 3.20194 3.66476 4.12344 4.24395 4.32936 4.59009 4.62363 4.70890 4.81279 5.01642 5.02190 5.08441 5.21943 5.27064 5.34401 5.38092 5.41145 5.42410 5.51393 5.61877 5.65096 5.81359 5.87761 5.88947 5.91811 6.02828 6.05004 6.07444 6.10863 6.17644 6.25018 6.29955 6.33002 6.59028 6.74692 6.94173 7.20871 7.28594 7.33136 7.36200 7.60023 7.61355 7.90344 8.01545 8.33314 8.49731 8.73404 8.81478 9.10952 9.21531 9.31792 10.59991 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.004222 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.393262 B = 6631.111355 C = 9012.595773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.429 4.429 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.090 4.090 11 N -0.589 5.589 12 H 0.393 0.607 13 C 0.119 3.881 14 C -0.210 4.210 15 C -0.067 4.067 16 C -0.278 4.278 17 C 0.278 3.722 18 N -0.739 5.739 19 C 0.132 3.868 20 C 0.051 3.949 21 O -0.371 6.371 22 C 0.091 3.909 23 C -0.140 4.140 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.186 4.186 29 H 0.271 0.729 30 H 0.172 0.828 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.422 -0.341 5.389 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.031 3.969 10 C -0.214 4.214 11 N -0.189 5.189 12 H 0.226 0.774 13 C 0.006 3.994 14 C -0.233 4.233 15 C -0.087 4.087 16 C -0.304 4.304 17 C 0.173 3.827 18 N -0.373 5.373 19 C 0.006 3.994 20 C -0.026 4.026 21 O -0.290 6.290 22 C 0.033 3.967 23 C -0.178 4.178 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.158 4.158 28 C -0.196 4.196 29 H 0.082 0.918 30 H 0.189 0.811 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.251 0.749 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.143 -0.189 5.503 14.250 hybrid contribution 0.126 0.969 -0.208 0.999 sum 13.269 0.780 5.295 14.308 Atomic orbital electron populations 1.69699 1.06893 1.27795 1.42085 1.25556 0.94831 1.00130 0.94149 0.86437 0.79856 0.81364 0.79349 1.19598 1.20790 1.19280 1.18453 0.92950 0.89213 1.45645 0.91719 1.17860 0.92000 0.89401 0.97595 1.22527 1.00314 0.82588 1.15975 1.41440 1.11551 1.08665 1.57234 0.77427 1.17904 0.88325 0.92350 1.00845 1.19526 0.98484 0.92366 1.12961 1.20097 0.92433 0.97391 0.98819 1.19941 1.00283 0.92186 1.17979 1.17185 0.85909 0.88810 0.90754 1.44757 1.07596 1.09677 1.75223 1.21199 0.84009 0.94534 0.99615 1.22786 0.97078 0.92141 0.90576 1.88038 1.51096 1.35940 1.53931 1.22067 0.90877 0.86469 0.97264 1.22043 0.97276 0.97836 1.00651 1.21490 0.97712 0.95090 1.01099 1.21575 0.97376 0.97972 0.98982 1.21501 0.97065 0.97523 0.99362 1.21605 0.98246 0.93348 1.02640 1.18988 0.92993 0.96137 1.11492 0.91839 0.81141 0.88701 0.87962 0.88049 0.74950 0.92139 0.91592 0.92514 0.92750 0.92458 0.91093 0.92039 0.92066 0.91901 0.92072 0.91810 0.91966 0.91449 0.90705 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.20 10.80 55.54 0.60 -21.60 16 2 C 0.06 1.66 5.47 -17.34 -0.09 1.56 16 3 Si 0.90 19.59 29.56 -169.99 -5.02 14.56 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.43 -11.53 8.73 -38.04 -0.33 -11.86 16 8 H 0.06 1.66 5.82 -52.49 -0.31 1.36 16 9 C 0.04 1.00 5.98 -104.81 -0.63 0.37 16 10 C -0.09 -2.34 10.77 -15.59 -0.17 -2.50 16 11 N -0.59 -13.30 5.99 -9.80 -0.06 -13.36 16 12 H 0.39 7.32 8.96 -40.82 -0.37 6.96 16 13 C 0.12 2.78 7.23 -83.92 -0.61 2.18 16 14 C -0.21 -4.31 10.07 -39.33 -0.40 -4.70 16 15 C -0.07 -1.30 10.00 -39.59 -0.40 -1.69 16 16 C -0.28 -5.58 9.32 -39.32 -0.37 -5.95 16 17 C 0.28 6.25 6.67 -83.66 -0.56 5.69 16 18 N -0.74 -14.91 5.67 -58.52 -0.33 -15.24 16 19 C 0.13 2.03 5.34 -4.04 -0.02 2.01 16 20 C 0.05 0.69 5.88 37.16 0.22 0.91 16 21 O -0.37 -5.76 9.93 -35.23 -0.35 -6.11 16 22 C 0.09 1.16 2.61 -26.73 -0.07 1.09 16 23 C -0.14 -1.47 5.54 -26.73 -0.15 -1.62 16 24 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 25 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 26 C -0.12 -1.23 5.92 -26.75 -0.16 -1.38 16 27 C -0.12 -1.60 5.57 -26.75 -0.15 -1.74 16 28 C -0.19 -4.70 6.27 -104.76 -0.66 -5.36 16 29 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 30 H 0.17 4.52 6.37 -52.48 -0.33 4.19 16 31 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.10 1.78 6.73 -52.49 -0.35 1.42 16 34 H 0.41 8.95 5.55 -40.82 -0.23 8.73 16 35 H 0.06 0.93 7.74 -51.93 -0.40 0.53 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 37 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 38 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.06 0.69 7.79 -51.93 -0.40 0.29 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -29.62 385.10 -12.04 -41.67 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -7.84 Total: 19.69 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -4.85 Total: -25.42 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.21 Total: -50.20 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.35 Total: -6.11 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.62 -12.04 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171479955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.901 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds