Wall clock time and date at job start Tue Mar 31 2020 15:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 H 1.08994 * 109.47205 * 305.00078 * 3 2 1 5 5 C 1.50704 * 109.47095 * 184.99942 * 3 2 1 6 6 H 1.07998 * 120.00205 * 240.00509 * 5 3 2 7 7 C 1.37873 * 119.99592 * 60.00213 * 5 3 2 8 8 N 1.31515 * 120.00361 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99734 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47303 * 90.00179 * 9 7 5 11 11 H 1.48503 * 109.47146 * 209.99782 * 9 7 5 12 12 H 1.48499 * 109.47147 * 329.99810 * 9 7 5 13 13 N 1.46500 * 109.46936 * 65.00463 * 3 2 1 14 14 C 1.34776 * 119.99319 * 275.27270 * 13 3 2 15 15 O 1.21278 * 120.00682 * 354.50996 * 14 13 3 16 16 C 1.50709 * 119.99760 * 174.51033 * 14 13 3 17 17 N 1.46502 * 112.99673 * 326.70332 * 16 14 13 18 18 C 1.34778 * 119.99777 * 299.86262 * 17 16 14 19 19 O 1.21517 * 120.00078 * 355.00704 * 18 17 16 20 20 O 1.34637 * 120.00171 * 175.01643 * 18 17 16 21 21 C 1.45198 * 117.00307 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.46945 * 59.99517 * 21 20 18 23 23 C 1.52999 * 109.47111 * 179.97438 * 21 20 18 24 24 C 1.53003 * 109.47036 * 299.99603 * 21 20 18 25 25 C 1.54033 * 113.81755 * 194.87845 * 16 14 13 26 26 O 1.44455 * 85.42387 * 223.23735 * 25 16 14 27 27 C 1.44177 * 93.37634 * 24.08556 * 26 25 16 28 28 H 1.08997 * 109.47144 * 299.99162 * 1 2 3 29 29 H 1.09000 * 109.47096 * 59.99980 * 1 2 3 30 30 H 1.09005 * 109.46838 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47083 * 240.00064 * 2 1 3 32 32 H 1.09004 * 109.47581 * 120.00002 * 2 1 3 33 33 H 0.97008 * 119.99860 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00626 * 94.99801 * 13 3 2 35 35 H 0.96995 * 120.00372 * 119.86804 * 17 16 14 36 36 H 1.09004 * 109.47642 * 60.00468 * 22 21 20 37 37 H 1.09003 * 109.47003 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.47579 * 299.99925 * 22 21 20 39 39 H 1.08999 * 109.47286 * 59.99722 * 23 21 20 40 40 H 1.08995 * 109.47094 * 179.97438 * 23 21 20 41 41 H 1.09004 * 109.47159 * 299.99911 * 23 21 20 42 42 H 1.08997 * 109.47068 * 59.99775 * 24 21 20 43 43 H 1.08995 * 109.47285 * 180.02562 * 24 21 20 44 44 H 1.08999 * 109.46850 * 299.99965 * 24 21 20 45 45 H 1.09003 * 113.86112 * 337.33810 * 25 16 14 46 46 H 1.08997 * 113.86694 * 109.04977 * 25 16 14 47 47 H 1.09003 * 113.86302 * 221.76834 * 27 26 25 48 48 H 1.09003 * 113.86564 * 90.07144 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5549 -0.3499 -0.7604 11 1 6.3829 0.9226 -2.8174 12 1 6.5569 2.0740 -0.6903 13 7 1.6525 2.0974 1.2519 14 6 0.4331 2.6594 1.3689 15 8 -0.3055 2.7114 0.4083 16 6 -0.0128 3.2234 2.6934 17 7 0.5175 2.4805 3.8394 18 6 0.2255 1.1732 3.9885 19 8 -0.5497 0.6328 3.2245 20 8 0.7926 0.4660 4.9840 21 6 0.4315 -0.9368 5.0848 22 6 0.8228 -1.6581 3.7935 23 6 1.1699 -1.5699 6.2659 24 6 -1.0781 -1.0606 5.3008 25 6 -1.5265 3.4961 2.7755 26 8 -1.1511 4.7371 3.4125 27 6 0.1581 4.7498 2.8088 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0617 -2.9495 34 1 2.2719 2.1231 1.9979 35 1 1.0786 2.9294 4.4909 36 1 1.8983 -1.5699 3.6395 37 1 0.5513 -2.7110 3.8689 38 1 0.2971 -1.2072 2.9518 39 1 0.8915 -1.0560 7.1860 40 1 0.8985 -2.6228 6.3418 41 1 2.2453 -1.4817 6.1115 42 1 -1.6038 -0.6097 4.4592 43 1 -1.3491 -2.1136 5.3769 44 1 -1.3568 -0.5467 6.2208 45 1 -2.0045 3.6259 1.8045 46 1 -2.0638 2.8085 3.4287 47 1 0.9542 5.0544 3.4883 48 1 0.1957 5.2633 1.8480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181520806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:01 Heat of formation + Delta-G solvation = -127.247198 kcal Electronic energy + Delta-G solvation = -31354.325857 eV Core-core repulsion = 27218.238792 eV Total energy + Delta-G solvation = -4136.087065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47524 -40.25125 -38.35623 -37.02149 -35.05596 -34.53053 -33.66379 -32.28867 -30.81074 -28.97330 -27.46703 -27.30928 -26.93276 -26.73256 -23.40892 -23.01039 -21.90299 -20.15838 -19.65212 -19.23371 -18.29534 -17.89312 -16.74846 -16.18253 -16.17184 -15.97421 -15.74149 -15.25365 -14.94484 -14.55305 -14.38567 -14.27665 -13.97938 -13.54048 -13.30656 -12.74814 -12.64976 -12.55210 -12.27620 -12.11221 -11.94723 -11.83801 -11.76364 -11.57837 -11.41007 -11.33563 -11.19803 -11.16394 -10.99019 -10.81927 -10.35408 -10.33643 -10.16906 -10.09794 -9.90940 -9.84812 -9.47882 -9.03095 -8.67628 -8.50298 -7.84412 -6.12957 -4.22753 1.99096 2.87261 3.01171 3.22368 3.29508 3.31116 3.49411 3.95001 4.03106 4.29142 4.34440 4.69944 4.74290 4.89748 4.94883 5.15777 5.18380 5.35356 5.39621 5.40908 5.46551 5.54288 5.63966 5.64875 5.77357 5.83114 5.90699 5.97837 5.98552 6.15218 6.29812 6.47936 6.50049 6.54873 6.61165 6.77308 7.14527 7.27273 7.33603 7.39165 7.47957 7.62846 7.72007 7.90010 8.19073 8.41901 8.61098 8.74364 9.04186 9.44111 10.92012 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.005174 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.524831 B = 5410.819171 C = 6834.668611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.510 3.490 15 O -0.536 6.536 16 C 0.098 3.902 17 N -0.690 5.690 18 C 0.652 3.348 19 O -0.541 6.541 20 O -0.364 6.364 21 C 0.139 3.861 22 C -0.186 4.186 23 C -0.140 4.140 24 C -0.183 4.183 25 C 0.059 3.941 26 O -0.378 6.378 27 C 0.057 3.943 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.019 0.981 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.410 0.590 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 1.033 16.353 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.342 5.342 14 C 0.292 3.708 15 O -0.413 6.413 16 C 0.007 3.993 17 N -0.352 5.352 18 C 0.406 3.594 19 O -0.428 6.428 20 O -0.279 6.279 21 C 0.102 3.898 22 C -0.243 4.243 23 C -0.197 4.197 24 C -0.240 4.240 25 C -0.019 4.019 26 O -0.296 6.296 27 C -0.021 4.021 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.022 0.731 15.259 16.421 hybrid contribution 1.768 -0.190 0.459 1.837 sum -4.254 0.542 15.719 16.293 Atomic orbital electron populations 1.21899 0.98096 0.98355 1.01802 1.21859 0.92887 0.99398 1.01848 1.18828 0.94174 0.89320 0.80802 0.93228 1.21199 0.90693 1.39140 1.06216 0.92284 1.24870 0.98493 0.94821 0.95387 1.69903 1.35066 1.37466 1.09343 0.86482 0.85007 0.78408 0.77395 1.20598 1.21052 1.19891 1.46442 1.14210 1.55031 1.18536 1.20020 0.83123 0.79198 0.88475 1.90691 1.54030 1.57913 1.38703 1.23632 0.96997 0.93370 0.85264 1.44158 1.55849 1.07364 1.27843 1.17969 0.79573 0.81949 0.79920 1.90969 1.37127 1.69323 1.45359 1.86268 1.66678 1.25105 1.49818 1.22070 0.95248 0.75576 0.96881 1.22542 1.02945 1.00657 0.98127 1.21854 1.01118 1.00351 0.96366 1.22511 0.94918 1.02997 1.03549 1.24328 0.93517 0.84396 0.99632 1.89729 1.30031 1.43994 1.65886 1.24201 0.87422 0.90252 1.00223 0.92221 0.93844 0.96151 0.88615 0.95369 0.92572 0.78245 0.75398 0.91837 0.91438 0.88723 0.91732 0.90231 0.91365 0.89251 0.91242 0.92452 0.87202 0.88261 0.87830 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.58 37.16 0.32 -3.05 16 2 C -0.12 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.75 2.25 -69.08 -0.16 6.59 16 4 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 13 N -0.70 -14.21 4.89 -54.93 -0.27 -14.48 16 14 C 0.51 9.80 4.52 -10.98 -0.05 9.75 16 15 O -0.54 -12.13 13.48 5.56 0.07 -12.06 16 16 C 0.10 1.42 1.06 -131.89 -0.14 1.28 16 17 N -0.69 -8.84 4.76 -59.80 -0.28 -9.12 16 18 C 0.65 9.73 7.62 54.06 0.41 10.14 16 19 O -0.54 -9.41 9.28 -19.29 -0.18 -9.59 16 20 O -0.36 -4.92 9.94 -40.32 -0.40 -5.32 16 21 C 0.14 1.68 1.13 -90.62 -0.10 1.58 16 22 C -0.19 -2.57 8.37 37.16 0.31 -2.26 16 23 C -0.14 -1.28 8.85 37.16 0.33 -0.95 16 24 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 25 C 0.06 0.85 8.07 37.64 0.30 1.15 16 26 O -0.38 -5.10 12.46 -35.23 -0.44 -5.54 16 27 C 0.06 0.67 8.51 37.64 0.32 0.99 16 28 H 0.06 1.37 4.14 -51.93 -0.22 1.16 16 29 H 0.04 1.07 7.92 -51.93 -0.41 0.66 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.39 7.14 8.11 -40.82 -0.33 6.81 16 35 H 0.41 4.00 8.75 -40.82 -0.36 3.65 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.63 5.88 -51.93 -0.31 1.32 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.11 1.67 7.33 -51.93 -0.38 1.29 16 46 H 0.10 1.40 7.89 -51.93 -0.41 0.99 16 47 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 48 H 0.11 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -31.13 378.62 -6.47 -37.60 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.60 Total: 13.53 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 1.32 Total: 7.79 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.07 Total: -47.56 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.94 Total: -32.50 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.13 -6.47 -37.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181520806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.647 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds