Wall clock time and date at job start Tue Mar 31 2020 16:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99747 * 2 1 4 4 H 1.48503 * 109.46683 * 174.65843 * 3 2 1 5 5 H 1.48496 * 109.47033 * 294.65691 * 3 2 1 6 6 H 1.48496 * 109.47167 * 54.66269 * 3 2 1 7 7 C 1.37876 * 119.99499 * 179.97438 * 2 1 3 8 8 C 1.51264 * 120.85394 * 348.87919 * 7 2 1 9 9 C 1.53225 * 108.53887 * 231.32767 * 8 7 2 10 10 C 1.52960 * 109.40403 * 305.37722 * 9 8 7 11 11 H 1.09001 * 109.41043 * 303.48448 * 10 9 8 12 12 N 1.46499 * 109.35832 * 183.67029 * 10 9 8 13 13 C 1.34779 * 120.00368 * 84.81413 * 12 10 9 14 14 O 1.21591 * 119.99825 * 0.02562 * 13 12 10 15 15 N 1.34774 * 120.00015 * 180.02562 * 13 12 10 16 16 C 1.46503 * 120.00050 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.24595 * 34.46315 * 16 15 13 18 18 C 1.52733 * 109.25380 * 153.89167 * 16 15 13 19 19 C 1.53337 * 108.38570 * 171.31430 * 18 16 15 20 20 C 1.52735 * 108.36958 * 290.09372 * 19 18 16 21 21 C 1.50626 * 110.57772 * 51.11357 * 20 19 18 22 22 C 1.38916 * 117.74217 * 162.47385 * 21 20 19 23 23 C 1.37941 * 120.54368 * 179.66568 * 22 21 20 24 24 C 1.38257 * 119.76948 * 0.03081 * 23 22 21 25 25 C 1.37931 * 119.77686 * 0.10313 * 24 23 22 26 26 C 1.37663 * 122.57238 * 342.36264 * 21 20 19 27 27 C 1.52959 * 109.82059 * 63.59473 * 10 9 8 28 28 C 1.51266 * 120.84479 * 168.86245 * 7 2 1 29 29 H 0.97007 * 119.99734 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.62409 * 351.04064 * 8 7 2 31 31 H 1.08996 * 109.62687 * 111.61147 * 8 7 2 32 32 H 1.09003 * 109.48617 * 185.39404 * 9 8 7 33 33 H 1.09001 * 109.48293 * 65.35130 * 9 8 7 34 34 H 0.97001 * 119.99932 * 264.82390 * 12 10 9 35 35 H 0.96994 * 120.00414 * 0.02562 * 15 13 12 36 36 H 1.08996 * 109.68421 * 291.04151 * 18 16 15 37 37 H 1.09001 * 109.67976 * 51.59429 * 18 16 15 38 38 H 1.09001 * 109.68119 * 170.36878 * 19 18 16 39 39 H 1.09003 * 109.68324 * 49.80889 * 19 18 16 40 40 H 1.08999 * 109.25211 * 290.83333 * 20 19 18 41 41 H 1.08997 * 109.25801 * 171.40104 * 20 19 18 42 42 H 1.07995 * 119.72901 * 359.69581 * 22 21 20 43 43 H 1.07994 * 120.11300 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.11617 * 180.12454 * 24 23 22 45 45 H 1.07997 * 119.73438 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47924 * 56.38697 * 27 10 9 47 47 H 1.09005 * 109.47962 * 176.42605 * 27 10 9 48 48 H 1.08998 * 109.63091 * 8.95284 * 28 7 2 49 49 H 1.09002 * 109.62573 * 248.38893 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3494 0.1303 5 1 1.9907 2.3385 -1.2724 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1941 0.0005 8 6 1.2887 -2.5028 0.2516 9 6 2.0329 -3.2611 1.3557 10 6 3.5042 -3.4120 0.9657 11 1 3.5735 -3.9125 -0.0002 12 7 4.1957 -4.2123 1.9793 13 6 4.1681 -5.5580 1.9098 14 8 3.5696 -6.1078 1.0054 15 7 4.8038 -6.2941 2.8427 16 6 4.7743 -7.7569 2.7668 17 1 4.7787 -8.0626 1.7205 18 6 6.0116 -8.3224 3.4611 19 6 5.8555 -9.8443 3.5637 20 6 4.7527 -10.1480 4.5759 21 6 3.5078 -9.3636 4.2538 22 6 2.3133 -9.7828 4.8259 23 6 1.1396 -9.1027 4.5757 24 6 1.1510 -7.9951 3.7483 25 6 2.3355 -7.5789 3.1770 26 6 3.5184 -8.2632 3.4267 27 6 4.1600 -2.0332 0.8720 28 6 3.4958 -1.2289 -0.2503 29 1 -0.4850 0.8401 -0.0004 30 1 0.2650 -2.3051 0.5693 31 1 1.2832 -3.0981 -0.6615 32 1 1.5875 -4.2478 1.4829 33 1 1.9599 -2.7058 2.2908 34 1 4.6734 -3.7736 2.7007 35 1 5.2810 -5.8556 3.5643 36 1 6.9011 -8.0830 2.8785 37 1 6.1000 -7.8943 4.4597 38 1 6.7933 -10.2878 3.8982 39 1 5.5826 -10.2518 2.5902 40 1 5.0979 -9.8802 5.5745 41 1 4.5235 -11.2132 4.5491 42 1 2.3036 -10.6479 5.4723 43 1 0.2150 -9.4344 5.0244 44 1 0.2356 -7.4572 3.5501 45 1 2.3435 -6.7139 2.5305 46 1 4.0366 -1.5070 1.8186 47 1 5.2221 -2.1498 0.6563 48 1 3.8901 -0.2127 -0.2552 49 1 3.6946 -1.7061 -1.2099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186475439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:26 Heat of formation + Delta-G solvation = -26.507731 kcal Electronic energy + Delta-G solvation = -28375.541304 eV Core-core repulsion = 24686.964644 eV Total energy + Delta-G solvation = -3688.576660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69545 -39.27515 -37.04255 -36.27441 -34.20440 -33.67643 -31.79873 -30.81803 -30.30495 -29.59353 -28.49399 -26.93444 -23.78664 -22.91644 -22.34157 -21.72778 -21.57764 -20.37743 -19.64769 -19.54760 -17.94758 -16.91647 -16.27943 -16.01921 -15.53384 -15.40636 -14.83237 -14.54797 -14.44696 -14.27229 -13.90695 -13.72536 -13.29698 -13.13808 -12.92291 -12.82246 -12.64164 -12.29300 -12.23024 -12.07409 -11.82306 -11.56216 -11.48180 -11.27176 -11.02376 -10.86391 -10.77476 -10.72739 -10.55914 -10.24026 -9.92683 -9.79605 -9.37228 -9.12762 -9.00211 -8.79745 -8.68878 -8.60194 -8.39530 -8.18067 -6.09486 -3.98401 1.33069 1.43549 2.95501 3.26002 3.34473 3.36152 3.49721 3.80630 4.36801 4.38667 4.50269 4.51931 4.68617 4.79236 4.94201 5.04582 5.16357 5.17474 5.25394 5.30342 5.40216 5.51130 5.57432 5.68008 5.70369 5.75306 5.84509 5.91936 5.97789 6.06311 6.12671 6.20543 6.48845 6.49854 6.50549 6.55793 6.63711 6.72012 6.75971 6.81545 6.82342 7.06498 7.08980 7.13339 7.14362 7.38943 7.44679 7.66571 7.81652 7.88173 8.31463 8.42196 8.91610 8.98913 9.55902 11.00063 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.002817 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.931810 B = 9937.696683 C =10874.709279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.489 4.489 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.171 3.829 11 H 0.078 0.922 12 N -0.740 5.740 13 C 0.700 3.300 14 O -0.587 6.587 15 N -0.747 5.747 16 C 0.206 3.794 17 H 0.098 0.902 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.080 4.080 21 C -0.076 4.076 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.098 4.098 26 C -0.095 4.095 27 C -0.113 4.113 28 C -0.021 4.021 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.006 0.994 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.388 0.612 35 H 0.393 0.607 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.139 0.861 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.043 0.957 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -17.828 11.884 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.508 4.508 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.068 3.932 11 H 0.096 0.904 12 N -0.392 5.392 13 C 0.401 3.599 14 O -0.465 6.465 15 N -0.402 5.402 16 C 0.101 3.899 17 H 0.116 0.884 18 C -0.163 4.163 19 C -0.154 4.154 20 C -0.117 4.117 21 C -0.076 4.076 22 C -0.150 4.150 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.116 4.116 26 C -0.096 4.096 27 C -0.151 4.151 28 C -0.059 4.059 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.221 0.779 35 H 0.227 0.773 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.156 0.844 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 10.933 -18.188 11.005 23.905 hybrid contribution 0.581 1.374 0.867 1.725 sum 11.514 -16.814 11.873 23.585 Atomic orbital electron populations 1.69915 1.06249 1.26784 1.49320 1.24858 0.94613 0.98536 0.94658 0.86764 0.81023 0.83826 0.77785 1.18114 1.20948 1.21291 1.20047 0.90898 0.92057 1.47757 1.19317 0.97203 0.93287 0.92586 1.21988 0.94170 0.98356 1.00825 1.20934 0.92162 0.90091 0.89983 0.90398 1.45665 1.57570 1.04068 1.31909 1.16041 0.79638 0.81993 0.82244 1.90925 1.48254 1.71155 1.36169 1.45275 1.58588 1.05905 1.30466 1.19492 0.91399 0.78683 1.00352 0.88433 1.21810 0.97060 0.96148 1.01232 1.21506 0.98622 0.95188 1.00052 1.20475 0.92568 0.99242 0.99386 1.19561 0.95015 0.95825 0.97211 1.21043 0.92393 1.00479 1.01129 1.21078 0.97901 0.95977 0.98664 1.21176 0.98385 0.97160 0.97832 1.21731 0.91706 1.00198 0.97940 1.20003 0.95702 0.95768 0.98166 1.21874 0.96876 0.94814 1.01566 1.19912 0.96090 0.96356 0.93577 0.92698 0.92795 0.97523 0.94712 0.93496 0.77907 0.77302 0.90693 0.91087 0.90935 0.91166 0.90740 0.90802 0.86531 0.86390 0.86157 0.84381 0.92741 0.94533 0.93835 0.96211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.82 55.43 0.71 -24.89 16 2 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 3 Si 0.88 20.48 27.95 -169.99 -4.75 15.73 16 4 H -0.26 -5.63 5.58 56.52 0.32 -5.31 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.49 -12.82 5.48 -98.93 -0.54 -13.36 16 8 C 0.01 0.36 5.93 -27.49 -0.16 0.20 16 9 C -0.11 -2.51 5.50 -26.64 -0.15 -2.66 16 10 C 0.17 3.35 2.35 -67.97 -0.16 3.19 16 11 H 0.08 1.71 7.57 -51.93 -0.39 1.32 16 12 N -0.74 -11.61 5.07 -58.72 -0.30 -11.91 16 13 C 0.70 11.31 7.03 -86.92 -0.61 10.70 16 14 O -0.59 -11.88 13.85 5.29 0.07 -11.81 16 15 N -0.75 -8.95 4.83 -59.98 -0.29 -9.23 16 16 C 0.21 2.37 2.59 -69.25 -0.18 2.20 16 17 H 0.10 1.33 7.55 -51.93 -0.39 0.94 16 18 C -0.12 -0.98 5.43 -26.69 -0.15 -1.12 16 19 C -0.12 -0.81 5.98 -26.69 -0.16 -0.97 16 20 C -0.08 -0.61 5.67 -28.06 -0.16 -0.77 16 21 C -0.08 -0.82 5.74 -104.62 -0.60 -1.42 16 22 C -0.13 -1.41 9.61 -39.44 -0.38 -1.79 16 23 C -0.12 -1.36 10.05 -39.68 -0.40 -1.76 16 24 C -0.13 -1.74 10.05 -39.69 -0.40 -2.14 16 25 C -0.10 -1.48 9.02 -39.44 -0.36 -1.83 16 26 C -0.09 -1.22 5.55 -104.61 -0.58 -1.80 16 27 C -0.11 -2.18 5.40 -26.64 -0.14 -2.32 16 28 C -0.02 -0.49 5.65 -27.49 -0.16 -0.64 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.51 7.19 -51.93 -0.37 1.13 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.39 4.90 8.62 -40.82 -0.35 4.55 16 35 H 0.39 3.59 8.62 -40.82 -0.35 3.24 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 42 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.14 2.46 4.49 -52.49 -0.24 2.23 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.04 0.98 4.36 -51.93 -0.23 0.75 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -31.24 375.27 -12.16 -43.39 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.88 Total: 7.39 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -5.37 Total: -14.33 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.12 Total: -46.03 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.75 Total: 15.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.24 -12.16 -43.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186475439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.884 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds