Wall clock time and date at job start Tue Mar 31 2020 16:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00282 * 2 1 4 4 H 1.48495 * 109.47025 * 240.00521 * 3 2 1 5 5 H 1.48503 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46940 * 120.00200 * 3 2 1 7 7 C 1.37881 * 119.99649 * 180.02562 * 2 1 3 8 8 C 1.51259 * 120.85224 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.53796 * 128.63377 * 8 7 2 10 10 C 1.52956 * 109.39990 * 54.62945 * 9 8 7 11 11 H 1.08992 * 109.41940 * 56.43993 * 10 9 8 12 12 N 1.46507 * 109.40983 * 176.29669 * 10 9 8 13 13 C 1.34770 * 120.00015 * 204.99820 * 12 10 9 14 14 O 1.21589 * 119.99976 * 359.97438 * 13 12 10 15 15 N 1.34780 * 119.99970 * 180.02562 * 13 12 10 16 16 C 1.46503 * 119.99889 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.22010 * 324.45794 * 16 15 13 18 18 C 1.52734 * 109.25558 * 205.00007 * 16 15 13 19 19 C 1.53331 * 108.40682 * 188.57980 * 18 16 15 20 20 C 1.52726 * 108.39535 * 69.84831 * 19 18 16 21 21 C 1.50630 * 110.60077 * 308.94596 * 20 19 18 22 22 C 1.38914 * 117.75792 * 197.67518 * 21 20 19 23 23 C 1.37931 * 120.54811 * 180.24862 * 22 21 20 24 24 C 1.38264 * 119.77011 * 0.03641 * 23 22 21 25 25 C 1.37930 * 119.77237 * 359.86577 * 24 23 22 26 26 C 1.37664 * 122.56486 * 17.72169 * 21 20 19 27 27 C 1.52956 * 109.81828 * 296.39717 * 10 9 8 28 28 C 1.51269 * 120.84571 * 179.97438 * 7 2 1 29 29 H 0.97004 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.62585 * 8.91928 * 8 7 2 31 31 H 1.09000 * 109.78778 * 248.44493 * 8 7 2 32 32 H 1.08996 * 109.47836 * 294.64752 * 9 8 7 33 33 H 1.09004 * 109.49309 * 174.61243 * 9 8 7 34 34 H 0.97005 * 119.99791 * 24.99781 * 12 10 9 35 35 H 0.96995 * 119.99875 * 359.97438 * 15 13 12 36 36 H 1.09002 * 109.68445 * 68.83898 * 18 16 15 37 37 H 1.08999 * 109.68324 * 308.32046 * 18 16 15 38 38 H 1.08997 * 109.67470 * 189.57273 * 19 18 16 39 39 H 1.09000 * 109.67624 * 310.08119 * 19 18 16 40 40 H 1.08999 * 109.25695 * 69.23890 * 20 19 18 41 41 H 1.09005 * 109.24945 * 188.70026 * 20 19 18 42 42 H 1.08002 * 119.72847 * 0.24802 * 22 21 20 43 43 H 1.08003 * 120.11695 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.11290 * 179.88788 * 24 23 22 45 45 H 1.08004 * 119.72747 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.48914 * 183.57836 * 27 10 9 47 47 H 1.09006 * 109.48644 * 303.62711 * 27 10 9 48 48 H 1.08997 * 109.62968 * 351.08429 * 28 7 2 49 49 H 1.09005 * 109.62498 * 111.65212 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8221 -3.3822 -1.1358 10 6 3.3392 -3.5067 -0.9856 11 1 3.5739 -3.9112 -0.0011 12 7 3.8584 -4.4069 -2.0183 13 6 5.0160 -5.0670 -1.8168 14 8 5.6296 -4.9151 -0.7782 15 7 5.4939 -5.8948 -2.7671 16 6 6.7525 -6.6119 -2.5483 17 1 7.4351 -5.9753 -1.9853 18 6 7.3796 -6.9524 -3.8987 19 6 8.5740 -7.8830 -3.6570 20 6 8.0431 -9.2394 -3.1979 21 6 7.0779 -9.0710 -2.0538 22 6 6.7928 -10.1877 -1.2782 23 6 5.9132 -10.0998 -0.2194 24 6 5.3090 -8.8909 0.0728 25 6 5.5923 -7.7805 -0.6949 26 6 6.4801 -7.8663 -1.7598 27 6 3.9899 -2.1307 -1.1368 28 6 3.5170 -1.2165 -0.0011 29 1 -0.4850 0.8401 0.0004 30 1 0.2035 -2.3408 -0.1593 31 1 1.4174 -3.0212 0.9532 32 1 1.5884 -2.9189 -2.0943 33 1 1.3698 -4.3730 -1.0910 34 1 3.3690 -4.5278 -2.8471 35 1 5.0046 -6.0157 -3.5958 36 1 7.7188 -6.0388 -4.3868 37 1 6.6449 -7.4540 -4.5285 38 1 9.1383 -8.0036 -4.5817 39 1 9.2185 -7.4603 -2.8862 40 1 7.5334 -9.7261 -4.0294 41 1 8.8779 -9.8613 -2.8744 42 1 7.2638 -11.1325 -1.5060 43 1 5.6969 -10.9723 0.3793 44 1 4.6180 -8.8163 0.8994 45 1 5.1203 -6.8365 -0.4658 46 1 5.0740 -2.2343 -1.0923 47 1 3.7049 -1.6970 -2.0954 48 1 3.8981 -0.2078 -0.1602 49 1 3.8778 -1.6010 0.9529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186475440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:29 Heat of formation + Delta-G solvation = -29.974744 kcal Electronic energy + Delta-G solvation = -28266.749162 eV Core-core repulsion = 24578.022161 eV Total energy + Delta-G solvation = -3688.727001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72972 -39.30066 -37.05391 -36.30681 -34.22133 -33.69242 -31.80247 -30.83378 -30.34217 -29.63923 -28.51260 -26.90909 -23.81880 -22.94975 -22.46152 -21.77950 -21.45326 -20.42662 -19.68618 -19.50766 -17.97305 -16.98580 -16.27943 -15.95640 -15.53198 -15.45028 -14.99893 -14.48724 -14.42584 -14.29149 -13.92674 -13.74687 -13.33156 -13.14876 -12.96390 -12.77762 -12.65489 -12.31890 -12.19469 -12.04509 -11.85423 -11.60649 -11.48810 -11.27645 -10.98704 -10.82379 -10.79621 -10.67694 -10.57722 -10.19778 -10.03550 -9.83623 -9.68603 -9.11382 -8.99120 -8.79532 -8.73576 -8.64666 -8.47055 -8.25046 -6.10102 -4.00493 1.28696 1.38923 2.93995 3.30629 3.36739 3.39239 3.46954 3.76341 4.34947 4.39861 4.48101 4.50537 4.66553 4.76924 4.91119 5.00679 5.11921 5.18329 5.22449 5.28166 5.37198 5.47928 5.56252 5.66983 5.69260 5.75681 5.81674 5.91304 5.96440 6.02291 6.08227 6.23072 6.44815 6.46530 6.49964 6.50870 6.57990 6.71883 6.73018 6.78210 6.91363 6.96637 7.01900 7.06844 7.16813 7.35000 7.45913 7.65519 7.72621 7.81995 8.30609 8.38928 8.89417 8.96478 9.55236 10.99611 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.002682 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.933123 B =10435.810490 C =11095.741763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.489 4.489 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.172 3.828 11 H 0.078 0.922 12 N -0.739 5.739 13 C 0.700 3.300 14 O -0.587 6.587 15 N -0.747 5.747 16 C 0.206 3.794 17 H 0.098 0.902 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.080 4.080 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.100 4.100 26 C -0.094 4.094 27 C -0.114 4.114 28 C -0.008 4.008 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.006 0.994 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.390 0.610 35 H 0.394 0.606 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.139 0.861 46 H 0.037 0.963 47 H 0.049 0.951 48 H 0.024 0.976 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 -19.067 -9.532 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.508 4.508 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.069 3.931 11 H 0.096 0.904 12 N -0.391 5.391 13 C 0.401 3.599 14 O -0.466 6.466 15 N -0.402 5.402 16 C 0.101 3.899 17 H 0.115 0.885 18 C -0.163 4.163 19 C -0.154 4.154 20 C -0.117 4.117 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.095 4.095 27 C -0.153 4.153 28 C -0.047 4.047 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.222 0.778 35 H 0.228 0.772 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.157 0.843 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.043 0.957 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.820 -18.768 -8.548 24.825 hybrid contribution -0.125 0.739 -0.746 1.057 sum 13.695 -18.029 -9.294 24.474 Atomic orbital electron populations 1.69822 1.06132 1.27051 1.49873 1.24830 0.94722 0.98546 0.94516 0.86651 0.79375 0.82964 0.79065 1.20023 1.21912 1.19965 1.20046 0.89364 0.91486 1.49929 1.19328 0.98681 0.92735 0.91678 1.21937 0.92423 0.98559 1.02309 1.20917 0.94018 0.88403 0.89766 0.90435 1.45671 1.23220 1.48046 1.22186 1.16047 0.81632 0.78589 0.83642 1.90914 1.59882 1.68976 1.26847 1.45278 1.25974 1.48500 1.20460 1.19497 0.85210 0.89942 0.95278 0.88471 1.21809 0.98074 1.00373 0.96030 1.21501 0.97226 0.94834 1.01810 1.20480 0.97364 0.97853 0.96003 1.19575 0.98181 0.92692 0.97081 1.21046 0.99674 0.97879 0.96411 1.21073 0.97296 0.97707 0.97594 1.21156 1.00421 0.93057 1.00059 1.21774 0.96645 0.99732 0.93615 1.20015 0.97999 0.94267 0.97254 1.21920 0.97415 0.95345 1.00596 1.19601 0.96520 0.94527 0.94017 0.92541 0.92113 0.97539 0.92782 0.94641 0.77779 0.77249 0.90632 0.91058 0.90902 0.91166 0.90698 0.90787 0.86509 0.86408 0.86267 0.84304 0.94396 0.93193 0.95709 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.73 55.43 0.71 -24.76 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.45 26.80 -169.99 -4.56 16.90 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.49 -12.87 5.51 -98.93 -0.55 -13.41 16 8 C 0.01 0.34 5.97 -27.49 -0.16 0.17 16 9 C -0.11 -2.30 5.40 -26.63 -0.14 -2.44 16 10 C 0.17 3.36 2.35 -67.97 -0.16 3.20 16 11 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 12 N -0.74 -11.56 5.08 -58.72 -0.30 -11.86 16 13 C 0.70 11.18 7.03 -86.92 -0.61 10.56 16 14 O -0.59 -11.68 13.76 5.29 0.07 -11.61 16 15 N -0.75 -8.84 4.86 -59.97 -0.29 -9.14 16 16 C 0.21 2.34 2.59 -69.24 -0.18 2.16 16 17 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 18 C -0.12 -0.98 5.43 -26.70 -0.14 -1.12 16 19 C -0.12 -0.80 5.98 -26.70 -0.16 -0.96 16 20 C -0.08 -0.59 5.67 -28.06 -0.16 -0.75 16 21 C -0.07 -0.78 5.74 -104.62 -0.60 -1.38 16 22 C -0.13 -1.34 9.61 -39.44 -0.38 -1.72 16 23 C -0.12 -1.29 10.05 -39.68 -0.40 -1.69 16 24 C -0.13 -1.65 10.05 -39.68 -0.40 -2.05 16 25 C -0.10 -1.43 8.99 -39.45 -0.35 -1.79 16 26 C -0.09 -1.16 5.55 -104.61 -0.58 -1.74 16 27 C -0.11 -2.41 5.50 -26.62 -0.15 -2.55 16 28 C -0.01 -0.20 5.59 -27.47 -0.15 -0.36 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.39 4.96 8.61 -40.82 -0.35 4.61 16 35 H 0.39 3.57 8.61 -40.82 -0.35 3.22 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.12 0.91 8.05 -52.49 -0.42 0.48 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.14 2.34 4.37 -52.48 -0.23 2.11 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.02 0.59 5.17 -51.93 -0.27 0.32 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -30.91 376.09 -11.90 -42.82 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.83 Total: 5.87 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.38 Total: -13.88 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.12 Total: -45.76 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.56 Total: 16.90 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.91 -11.90 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186475440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.842 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds