Wall clock time and date at job start Tue Mar 31 2020 16:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00282 * 2 1 4 4 H 1.48495 * 109.47025 * 240.00521 * 3 2 1 5 5 H 1.48503 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46940 * 120.00200 * 3 2 1 7 7 C 1.37881 * 119.99649 * 180.02562 * 2 1 3 8 8 C 1.51259 * 120.85224 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.53796 * 128.63377 * 8 7 2 10 10 C 1.52956 * 109.39990 * 54.62945 * 9 8 7 11 11 H 1.08992 * 109.41940 * 56.43993 * 10 9 8 12 12 N 1.46507 * 109.40983 * 176.29669 * 10 9 8 13 13 C 1.34770 * 120.00015 * 204.99820 * 12 10 9 14 14 O 1.21589 * 119.99976 * 359.97438 * 13 12 10 15 15 N 1.34780 * 119.99970 * 180.02562 * 13 12 10 16 16 C 1.46503 * 119.99889 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.22010 * 324.45794 * 16 15 13 18 18 C 1.52734 * 109.25558 * 205.00007 * 16 15 13 19 19 C 1.53331 * 108.40682 * 188.57980 * 18 16 15 20 20 C 1.52726 * 108.39535 * 69.84831 * 19 18 16 21 21 C 1.50630 * 110.60077 * 308.94596 * 20 19 18 22 22 C 1.38914 * 117.75792 * 197.67518 * 21 20 19 23 23 C 1.37931 * 120.54811 * 180.24862 * 22 21 20 24 24 C 1.38264 * 119.77011 * 0.03641 * 23 22 21 25 25 C 1.37930 * 119.77237 * 359.86577 * 24 23 22 26 26 C 1.37664 * 122.56486 * 17.72169 * 21 20 19 27 27 C 1.52956 * 109.81828 * 296.39717 * 10 9 8 28 28 C 1.51269 * 120.84571 * 179.97438 * 7 2 1 29 29 H 0.97004 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.62585 * 8.91928 * 8 7 2 31 31 H 1.09000 * 109.78778 * 248.44493 * 8 7 2 32 32 H 1.08996 * 109.47836 * 294.64752 * 9 8 7 33 33 H 1.09004 * 109.49309 * 174.61243 * 9 8 7 34 34 H 0.97005 * 119.99791 * 24.99781 * 12 10 9 35 35 H 0.96995 * 119.99875 * 359.97438 * 15 13 12 36 36 H 1.09002 * 109.68445 * 68.83898 * 18 16 15 37 37 H 1.08999 * 109.68324 * 308.32046 * 18 16 15 38 38 H 1.08997 * 109.67470 * 189.57273 * 19 18 16 39 39 H 1.09000 * 109.67624 * 310.08119 * 19 18 16 40 40 H 1.08999 * 109.25695 * 69.23890 * 20 19 18 41 41 H 1.09005 * 109.24945 * 188.70026 * 20 19 18 42 42 H 1.08002 * 119.72847 * 0.24802 * 22 21 20 43 43 H 1.08003 * 120.11695 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.11290 * 179.88788 * 24 23 22 45 45 H 1.08004 * 119.72747 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.48914 * 183.57836 * 27 10 9 47 47 H 1.09006 * 109.48644 * 303.62711 * 27 10 9 48 48 H 1.08997 * 109.62968 * 351.08429 * 28 7 2 49 49 H 1.09005 * 109.62498 * 111.65212 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8221 -3.3822 -1.1358 10 6 3.3392 -3.5067 -0.9856 11 1 3.5739 -3.9112 -0.0011 12 7 3.8584 -4.4069 -2.0183 13 6 5.0160 -5.0670 -1.8168 14 8 5.6296 -4.9151 -0.7782 15 7 5.4939 -5.8948 -2.7671 16 6 6.7525 -6.6119 -2.5483 17 1 7.4351 -5.9753 -1.9853 18 6 7.3796 -6.9524 -3.8987 19 6 8.5740 -7.8830 -3.6570 20 6 8.0431 -9.2394 -3.1979 21 6 7.0779 -9.0710 -2.0538 22 6 6.7928 -10.1877 -1.2782 23 6 5.9132 -10.0998 -0.2194 24 6 5.3090 -8.8909 0.0728 25 6 5.5923 -7.7805 -0.6949 26 6 6.4801 -7.8663 -1.7598 27 6 3.9899 -2.1307 -1.1368 28 6 3.5170 -1.2165 -0.0011 29 1 -0.4850 0.8401 0.0004 30 1 0.2035 -2.3408 -0.1593 31 1 1.4174 -3.0212 0.9532 32 1 1.5884 -2.9189 -2.0943 33 1 1.3698 -4.3730 -1.0910 34 1 3.3690 -4.5278 -2.8471 35 1 5.0046 -6.0157 -3.5958 36 1 7.7188 -6.0388 -4.3868 37 1 6.6449 -7.4540 -4.5285 38 1 9.1383 -8.0036 -4.5817 39 1 9.2185 -7.4603 -2.8862 40 1 7.5334 -9.7261 -4.0294 41 1 8.8779 -9.8613 -2.8744 42 1 7.2638 -11.1325 -1.5060 43 1 5.6969 -10.9723 0.3793 44 1 4.6180 -8.8163 0.8994 45 1 5.1203 -6.8365 -0.4658 46 1 5.0740 -2.2343 -1.0923 47 1 3.7049 -1.6970 -2.0954 48 1 3.8981 -0.2078 -0.1602 49 1 3.8778 -1.6010 0.9529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186475440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:28 Heat of formation + Delta-G solvation = -48.181661 kcal Electronic energy + Delta-G solvation = -28267.538673 eV Core-core repulsion = 24578.022161 eV Total energy + Delta-G solvation = -3689.516512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75871 -40.44127 -38.61335 -37.23724 -35.37498 -35.20681 -33.47516 -31.97231 -31.46598 -31.12702 -29.56098 -28.47893 -24.77825 -23.97783 -23.68624 -23.31453 -22.82639 -21.72816 -21.25140 -20.45967 -19.25581 -18.03292 -17.86654 -17.29184 -16.49048 -16.43581 -16.32570 -16.07196 -15.70023 -15.40114 -15.01933 -14.73933 -14.63038 -14.50143 -14.24394 -14.01320 -13.95766 -13.82721 -13.47841 -13.38069 -13.00793 -12.78152 -12.66338 -12.59447 -12.54329 -12.30199 -12.00454 -11.90575 -11.83598 -11.60419 -11.51692 -11.35955 -11.25942 -10.87987 -10.69441 -10.55751 -10.21547 -9.73162 -9.63508 -9.48650 -8.18802 -6.12633 0.41263 0.48903 1.38265 1.40132 1.47764 1.77217 2.19734 2.39731 2.85908 3.08028 3.36198 3.70207 3.75375 3.99967 4.04103 4.07250 4.16666 4.20714 4.23484 4.34250 4.48805 4.50158 4.54805 4.67767 4.70081 4.75907 4.85103 4.92234 4.95303 5.01512 5.06676 5.08663 5.13122 5.15992 5.16728 5.19674 5.24328 5.31661 5.38423 5.52159 5.53840 5.58536 5.61286 5.66844 5.72162 5.74936 5.78556 5.82254 6.09887 6.15734 6.33956 6.92363 7.17735 7.45443 7.65517 8.91928 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.002682 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.933123 B =10435.810490 C =11095.741763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.501 4.501 8 C 0.009 3.991 9 C -0.099 4.099 10 C 0.187 3.813 11 H 0.052 0.948 12 N -0.729 5.729 13 C 0.700 3.300 14 O -0.629 6.629 15 N -0.727 5.727 16 C 0.206 3.794 17 H 0.068 0.932 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.078 4.078 21 C -0.074 4.074 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.130 4.130 26 C -0.107 4.107 27 C -0.105 4.105 28 C -0.011 4.011 29 H 0.264 0.736 30 H 0.035 0.965 31 H -0.004 1.004 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.407 0.593 35 H 0.411 0.589 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.027 0.973 49 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.575 -21.209 -12.230 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.520 4.520 8 C -0.029 4.029 9 C -0.137 4.137 10 C 0.082 3.918 11 H 0.070 0.930 12 N -0.383 5.383 13 C 0.400 3.600 14 O -0.511 6.511 15 N -0.383 5.383 16 C 0.100 3.900 17 H 0.086 0.914 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.115 4.115 21 C -0.074 4.074 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.167 4.167 25 C -0.148 4.148 26 C -0.109 4.109 27 C -0.144 4.144 28 C -0.049 4.049 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.135 0.865 45 H 0.125 0.875 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 15.960 -20.944 -11.306 28.657 hybrid contribution -0.767 1.288 0.162 1.508 sum 15.194 -19.656 -11.144 27.228 Atomic orbital electron populations 1.69939 1.07419 1.27605 1.51696 1.25525 0.95353 1.01477 0.94760 0.85853 0.78419 0.79709 0.79377 1.18908 1.21719 1.19768 1.20573 0.90723 0.92090 1.48613 1.19287 0.97358 0.93273 0.92937 1.21691 0.92767 0.98803 1.00489 1.20438 0.93414 0.88179 0.89770 0.93004 1.45243 1.23468 1.47509 1.22090 1.16147 0.81278 0.78863 0.83670 1.90890 1.61040 1.70327 1.28823 1.45093 1.26131 1.47071 1.20009 1.19607 0.84227 0.88961 0.97171 0.91362 1.21811 0.98632 1.01316 0.93716 1.21532 0.96701 0.94186 1.02771 1.20578 0.97195 0.98498 0.95224 1.19989 0.97829 0.91780 0.97818 1.21475 0.98859 0.99072 0.95503 1.21370 0.96889 0.97497 0.98108 1.21270 1.01332 0.93807 1.00310 1.21663 0.98542 0.98968 0.95621 1.20135 0.98182 0.95528 0.97041 1.21787 0.97429 0.95614 0.99549 1.19608 0.95123 0.95367 0.94804 0.92650 0.94645 0.98591 0.92284 0.92460 0.75682 0.75270 0.89783 0.89480 0.88227 0.92238 0.88817 0.89090 0.83353 0.84076 0.86527 0.87518 0.94327 0.92598 0.95497 0.96939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 12.73 21.45 0.27 -53.93 16 2 C 0.03 1.53 5.46 84.66 0.46 1.99 16 3 Si 0.94 44.15 26.80 68.60 1.84 45.99 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.50 -26.75 5.51 -16.17 -0.09 -26.84 16 8 C 0.01 0.48 5.97 30.10 0.18 0.66 16 9 C -0.10 -3.98 5.40 30.66 0.17 -3.82 16 10 C 0.19 7.32 2.35 44.96 0.11 7.42 16 11 H 0.05 2.32 7.58 -2.39 -0.02 2.31 16 12 N -0.73 -22.35 5.08 -457.95 -2.33 -24.68 16 13 C 0.70 22.45 7.03 179.06 1.26 23.71 16 14 O -0.63 -26.03 13.76 -4.00 -0.05 -26.08 16 15 N -0.73 -16.63 4.86 -461.91 -2.24 -18.88 16 16 C 0.21 4.52 2.59 44.14 0.11 4.63 16 17 H 0.07 1.90 7.58 -2.39 -0.02 1.89 16 18 C -0.12 -1.50 5.43 30.62 0.17 -1.33 16 19 C -0.11 -1.18 5.98 30.61 0.18 -1.00 16 20 C -0.08 -0.84 5.67 29.73 0.17 -0.67 16 21 C -0.07 -1.36 5.74 -19.86 -0.11 -1.48 16 22 C -0.13 -2.29 9.61 22.36 0.21 -2.08 16 23 C -0.12 -2.44 10.05 22.20 0.22 -2.22 16 24 C -0.15 -3.90 10.05 22.20 0.22 -3.68 16 25 C -0.13 -3.87 8.99 22.36 0.20 -3.67 16 26 C -0.11 -2.60 5.55 -19.86 -0.11 -2.71 16 27 C -0.10 -4.40 5.50 30.67 0.17 -4.23 16 28 C -0.01 -0.52 5.59 30.12 0.17 -0.35 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.03 1.94 7.07 -2.39 -0.02 1.92 16 31 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.41 9.63 8.61 -92.70 -0.80 8.84 16 35 H 0.41 6.59 8.61 -92.71 -0.80 5.79 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.73 8.12 -2.38 -0.02 0.71 16 42 H 0.15 1.63 8.05 -2.91 -0.02 1.61 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.11 3.86 4.37 -2.91 -0.01 3.85 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.03 1.26 5.17 -2.39 -0.01 1.25 16 49 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -70.21 376.09 0.55 -69.66 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.63 Total: 23.59 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.69 Total: -15.67 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.30 Total: -97.49 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.84 Total: 45.99 kcal Total: -70.21 0.55 -69.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186475440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.478 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds