Wall clock time and date at job start Tue Mar 31 2020 14:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39900 * 109.47246 * 2 1 4 4 F 1.39907 * 109.47437 * 240.00273 * 2 1 3 5 5 C 1.53001 * 109.47610 * 120.00041 * 2 1 3 6 6 C 1.50703 * 115.54537 * 64.78905 * 5 2 1 7 7 O 1.21280 * 119.99827 * 245.97829 * 6 5 2 8 8 N 1.34772 * 120.00159 * 65.98557 * 6 5 2 9 9 C 1.46504 * 120.00377 * 175.09379 * 8 6 5 10 10 H 1.09005 * 112.88241 * 26.83480 * 9 8 6 11 11 C 1.53949 * 113.65993 * 255.49259 * 9 8 6 12 12 C 1.53951 * 87.29370 * 270.25988 * 11 9 8 13 13 H 1.08992 * 113.66219 * 89.74171 * 12 11 9 14 14 N 1.46503 * 113.65801 * 220.70320 * 12 11 9 15 15 C 1.36936 * 119.99479 * 255.49251 * 14 12 11 16 16 H 1.07994 * 120.00414 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99558 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99788 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00273 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47253 * 89.99951 * 19 17 15 21 21 H 1.48494 * 109.47328 * 210.00358 * 19 17 15 22 22 H 1.48506 * 109.46938 * 330.00477 * 19 17 15 23 23 C 1.52902 * 113.66384 * 158.30276 * 9 8 6 24 24 C 1.52903 * 121.14295 * 323.85207 * 23 9 8 25 25 C 1.53957 * 86.78388 * 209.37359 * 24 23 9 26 26 C 1.52913 * 121.13853 * 215.28252 * 23 9 8 27 27 C 1.52997 * 117.50462 * 210.46120 * 5 2 1 28 28 C 1.53000 * 117.49914 * 279.12782 * 5 2 1 29 29 H 1.09000 * 109.47102 * 294.98414 * 1 2 3 30 30 H 1.08999 * 109.47488 * 54.98580 * 1 2 3 31 31 H 1.09007 * 109.47378 * 174.98366 * 1 2 3 32 32 H 0.96996 * 119.99999 * 355.36475 * 8 6 5 33 33 H 1.09000 * 113.57922 * 24.86527 * 11 9 8 34 34 H 1.09000 * 113.57977 * 155.57521 * 11 9 8 35 35 H 0.96998 * 120.00456 * 75.50107 * 14 12 11 36 36 H 0.97005 * 119.99668 * 180.02562 * 18 17 15 37 37 H 1.08996 * 113.66306 * 323.84354 * 24 23 9 38 38 H 1.09008 * 113.66226 * 94.90671 * 24 23 9 39 39 H 1.08991 * 113.58237 * 270.13448 * 25 24 23 40 40 H 1.08998 * 113.58069 * 139.33182 * 25 24 23 41 41 H 1.08996 * 113.66298 * 265.10061 * 26 23 9 42 42 H 1.09003 * 113.65742 * 36.15773 * 26 23 9 43 43 H 1.08996 * 117.50326 * 215.00017 * 27 5 2 44 44 H 1.09002 * 117.49644 * 0.02562 * 27 5 2 45 45 H 1.08999 * 117.49962 * 359.96552 * 28 5 2 46 46 H 1.08996 * 117.50149 * 144.99611 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 1.7107 -2.1895 1.3319 7 8 0.9625 -2.5954 2.1959 8 7 2.2476 -3.0516 0.4460 9 6 2.0144 -4.4907 0.5904 10 1 1.0812 -4.7192 1.1053 11 6 3.2284 -5.2612 1.1406 12 6 3.6812 -5.4449 -0.3193 13 1 4.3231 -4.6425 -0.6825 14 7 4.2181 -6.7777 -0.6049 15 6 5.5690 -6.9570 -0.7400 16 1 6.2385 -6.1161 -0.6356 17 6 6.0778 -8.2198 -1.0112 18 7 7.3762 -8.3922 -1.1406 19 14 4.9199 -9.6745 -1.1911 20 1 4.5087 -9.8072 -2.6119 21 1 5.6123 -10.9148 -0.7583 22 1 3.7180 -9.4579 -0.3462 23 6 2.2112 -5.2775 -0.7058 24 6 1.8117 -4.6862 -2.0581 25 6 1.5575 -6.1334 -2.5180 26 6 1.3378 -6.4883 -1.0361 27 6 3.3784 -0.2635 1.8323 28 6 2.0726 0.0703 2.5582 29 1 -0.3633 0.4340 0.9315 30 1 -0.3634 0.5896 -0.8416 31 1 -0.3634 -1.0238 -0.0899 32 1 2.7918 -2.7195 -0.2851 33 1 3.9045 -4.6443 1.7325 34 1 2.9638 -6.1947 1.6372 35 1 3.6169 -7.5331 -0.6985 36 1 7.7317 -9.2746 -1.3305 37 1 0.9101 -4.0749 -2.0191 38 1 2.6336 -4.1986 -2.5824 39 1 2.4334 -6.6120 -2.9557 40 1 0.6628 -6.2455 -3.1304 41 1 1.7811 -7.4403 -0.7440 42 1 0.3030 -6.3833 -0.7099 43 1 4.0208 -1.0243 2.2758 44 1 3.8954 0.5518 1.3262 45 1 1.7312 1.1050 2.5292 46 1 1.8560 -0.4709 3.4791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203420945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:59 Heat of formation + Delta-G solvation = -51.092572 kcal Electronic energy + Delta-G solvation = -29732.414037 eV Core-core repulsion = 25488.541769 eV Total energy + Delta-G solvation = -4243.872268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.34016 -47.33742 -40.87467 -39.62041 -36.80795 -35.17003 -34.20146 -32.29106 -31.61917 -30.43860 -25.95867 -25.60439 -24.59608 -24.27528 -23.11412 -22.80115 -21.64797 -20.48524 -19.94423 -18.51348 -18.22140 -17.69143 -17.16564 -16.62795 -16.23828 -16.02841 -15.22937 -15.13586 -14.91754 -14.50754 -14.26158 -14.11043 -14.01871 -13.62949 -13.47773 -13.18420 -12.91273 -12.73109 -12.58726 -12.54616 -12.25821 -12.14108 -12.07702 -11.95496 -11.86794 -11.58158 -11.07116 -11.00828 -10.95344 -10.78636 -10.70193 -10.31460 -10.17871 -9.93344 -9.90798 -9.73356 -9.52008 -8.91953 -8.83170 -7.30588 -5.82114 -3.17691 2.25524 2.81275 3.10692 3.33056 3.35514 3.35772 3.41735 3.73820 3.93738 4.16946 4.37087 4.52564 4.53985 4.61487 4.62577 4.84857 4.91202 5.05370 5.08082 5.08769 5.19961 5.25361 5.31371 5.32686 5.47931 5.49266 5.50584 5.61492 5.70905 5.77443 5.86824 5.90015 5.93370 6.00614 6.16255 6.24979 6.28686 6.37337 6.51458 6.67990 6.74422 6.88664 7.46716 7.94275 8.09384 8.37608 9.15276 9.87679 10.07580 11.36097 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.003426 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.155238 B = 8171.218566 C = 8547.143141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.334 3.666 3 F -0.193 7.193 4 F -0.191 7.191 5 C -0.224 4.224 6 C 0.559 3.441 7 O -0.531 6.531 8 N -0.692 5.692 9 C 0.129 3.871 10 H 0.097 0.903 11 C -0.173 4.173 12 C 0.198 3.802 13 H 0.083 0.917 14 N -0.733 5.733 15 C -0.247 4.247 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.880 3.120 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.112 4.112 27 C -0.142 4.142 28 C -0.123 4.123 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.406 0.594 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.364 0.636 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.167 17.925 2.626 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.297 3.703 3 F -0.174 7.174 4 F -0.172 7.172 5 C -0.228 4.228 6 C 0.343 3.657 7 O -0.407 6.407 8 N -0.341 5.341 9 C 0.024 3.976 10 H 0.115 0.885 11 C -0.216 4.216 12 C 0.086 3.914 13 H 0.101 0.899 14 N -0.373 5.373 15 C -0.377 4.377 16 H 0.108 0.892 17 C -0.189 4.189 18 N -0.579 5.579 19 Si 0.710 3.290 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.125 4.125 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.150 4.150 27 C -0.179 4.179 28 C -0.160 4.160 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.199 0.801 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.378 17.622 3.177 23.603 hybrid contribution -0.286 -0.963 -0.614 1.177 sum -15.664 16.659 2.563 23.010 Atomic orbital electron populations 1.22722 0.90652 1.05850 1.05516 1.20068 0.93749 0.74894 0.81593 1.93010 1.90622 1.37092 1.96671 1.93036 1.90576 1.80812 1.52802 1.22448 1.08093 0.95133 0.97150 1.18838 0.80045 0.85122 0.81730 1.90708 1.35619 1.78571 1.35832 1.45605 1.52293 1.06368 1.29840 1.21746 0.99736 0.78281 0.97884 0.88476 1.24246 0.96650 0.99745 1.00915 1.21264 0.89192 0.89242 0.91662 0.89870 1.42731 1.05045 1.04120 1.85436 1.19105 0.81814 0.95638 1.41171 0.89162 1.24667 0.95447 0.97119 1.01618 1.69700 1.10374 1.22541 1.55280 0.86625 0.80657 0.83669 0.78041 1.20931 1.21642 1.20307 1.23547 0.99178 0.97014 0.92783 1.22630 1.00956 0.96506 0.96020 1.22784 1.01758 0.96812 0.95891 1.22499 0.98565 0.97424 0.96518 1.23216 0.89552 1.03573 1.01565 1.23073 0.99494 1.00245 0.93221 0.88887 0.89638 0.89180 0.75859 0.91889 0.89532 0.80139 0.93003 0.90650 0.91266 0.89402 0.92071 0.91055 0.90257 0.87011 0.86808 0.87095 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 9.18 37.15 0.34 -1.15 16 2 C 0.33 3.22 2.08 -26.73 -0.06 3.16 16 3 F -0.19 -1.89 15.64 2.25 0.04 -1.86 16 4 F -0.19 -2.11 15.65 2.25 0.04 -2.08 16 5 C -0.22 -2.27 1.71 -155.66 -0.27 -2.53 16 6 C 0.56 7.22 6.46 -10.99 -0.07 7.15 16 7 O -0.53 -8.43 16.33 5.56 0.09 -8.34 16 8 N -0.69 -8.87 4.92 -53.37 -0.26 -9.13 16 9 C 0.13 1.86 4.11 -67.48 -0.28 1.58 16 10 H 0.10 1.47 7.49 -51.93 -0.39 1.08 16 11 C -0.17 -2.90 7.68 -25.75 -0.20 -3.10 16 12 C 0.20 3.60 4.27 -67.48 -0.29 3.31 16 13 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 14 N -0.73 -16.52 5.16 -52.99 -0.27 -16.80 16 15 C -0.25 -6.76 10.46 -15.06 -0.16 -6.91 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 18 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 19 Si 0.88 21.67 27.74 -169.99 -4.71 16.95 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 23 C -0.12 -1.82 0.91 -154.72 -0.14 -1.96 16 24 C -0.12 -1.64 7.43 -26.28 -0.20 -1.84 16 25 C -0.14 -1.89 8.08 -25.74 -0.21 -2.10 16 26 C -0.11 -1.62 7.45 -26.28 -0.20 -1.81 16 27 C -0.14 -1.24 9.66 -26.69 -0.26 -1.50 16 28 C -0.12 -1.03 9.51 -26.69 -0.25 -1.28 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.41 4.91 7.42 -40.82 -0.30 4.61 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.36 8.11 3.73 -40.82 -0.15 7.96 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.11 0.89 7.64 -51.93 -0.40 0.49 16 45 H 0.11 0.74 7.92 -51.93 -0.41 0.32 16 46 H 0.12 1.03 8.00 -51.93 -0.42 0.61 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -31.40 377.05 -8.00 -39.41 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.05 Total: 13.06 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.32 Total: -8.88 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.24 Total: -53.94 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.40 -8.00 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203420945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.687 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds