Wall clock time and date at job start Tue Mar 31 2020 14:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39907 * 109.47037 * 2 1 4 4 F 1.39898 * 109.47147 * 240.00089 * 2 1 3 5 5 C 1.53004 * 109.47204 * 119.99812 * 2 1 3 6 6 C 1.50703 * 115.54931 * 298.59437 * 5 2 1 7 7 O 1.21286 * 119.99751 * 122.05253 * 6 5 2 8 8 N 1.34779 * 119.99882 * 302.05623 * 6 5 2 9 9 C 1.46502 * 119.99541 * 174.79287 * 8 6 5 10 10 H 1.09005 * 112.88443 * 336.33577 * 9 8 6 11 11 C 1.53943 * 113.66560 * 107.81092 * 9 8 6 12 12 C 1.53948 * 87.29843 * 139.20077 * 11 9 8 13 13 H 1.09001 * 113.66095 * 89.73812 * 12 11 9 14 14 N 1.46497 * 113.66445 * 220.79458 * 12 11 9 15 15 C 1.36936 * 120.00292 * 252.18503 * 14 12 11 16 16 H 1.07998 * 119.99765 * 0.02562 * 15 14 12 17 17 C 1.38813 * 120.00199 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46984 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46863 * 120.00405 * 19 17 15 22 22 H 1.48498 * 109.46937 * 240.00268 * 19 17 15 23 23 C 1.52906 * 86.78164 * 335.26705 * 12 11 9 24 24 C 1.52914 * 121.13689 * 259.17969 * 23 12 11 25 25 C 1.53951 * 86.78200 * 209.37730 * 24 23 12 26 26 C 1.52910 * 121.14182 * 150.61757 * 23 12 11 27 27 C 1.52997 * 117.49685 * 84.26424 * 5 2 1 28 28 C 1.53002 * 117.49778 * 152.92269 * 5 2 1 29 29 H 1.09003 * 109.47362 * 295.62914 * 1 2 3 30 30 H 1.09002 * 109.47028 * 55.63419 * 1 2 3 31 31 H 1.09004 * 109.47353 * 175.63493 * 1 2 3 32 32 H 0.96995 * 120.00091 * 354.78187 * 8 6 5 33 33 H 1.09001 * 113.57970 * 24.59890 * 11 9 8 34 34 H 1.09005 * 113.58349 * 253.80553 * 11 9 8 35 35 H 0.97007 * 120.00280 * 72.18510 * 14 12 11 36 36 H 0.96999 * 119.99848 * 179.97438 * 18 17 15 37 37 H 1.09002 * 113.66030 * 323.84981 * 24 23 12 38 38 H 1.09000 * 113.65865 * 94.90814 * 24 23 12 39 39 H 1.08995 * 113.58237 * 270.13104 * 25 24 23 40 40 H 1.08997 * 113.64965 * 139.34436 * 25 24 23 41 41 H 1.09004 * 113.66142 * 265.09775 * 26 23 12 42 42 H 1.09005 * 113.66075 * 36.14350 * 26 23 12 43 43 H 1.09005 * 117.49678 * 215.00510 * 27 5 2 44 44 H 1.08994 * 117.49930 * 0.02562 * 27 5 2 45 45 H 1.08995 * 117.50053 * 359.97438 * 28 5 2 46 46 H 1.09007 * 117.49425 * 144.97649 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 1.6431 -0.1022 2.5647 7 8 1.0226 -0.7531 3.3785 8 7 1.9777 1.1748 2.8367 9 6 1.4953 1.8128 4.0641 10 1 0.5886 1.3501 4.4542 11 6 2.5915 2.0199 5.1249 12 6 1.9635 3.3984 5.3994 13 1 1.1892 3.3815 6.1664 14 7 2.9488 4.4628 5.6057 15 6 3.1450 4.9809 6.8580 16 1 2.5737 4.6045 7.6937 17 6 4.0789 5.9890 7.0536 18 7 4.7755 6.4474 6.0353 19 14 4.3460 6.6962 8.7619 20 1 3.4451 6.0150 9.7260 21 1 5.7580 6.4845 9.1700 22 1 4.0476 8.1508 8.7477 23 6 1.4160 3.3371 3.9731 24 6 2.0938 4.0974 2.8325 25 6 0.7015 4.1890 2.1820 26 6 0.1113 4.0399 3.5960 27 6 2.1476 -2.2463 1.1901 28 6 3.4147 -1.3878 1.1684 29 1 -0.3634 0.4445 0.9266 30 1 -0.3633 0.5801 -0.8483 31 1 -0.3634 -1.0247 -0.0782 32 1 2.5380 1.6713 2.2200 33 1 3.5971 2.0741 4.7079 34 1 2.5186 1.3320 5.9674 35 1 3.4622 4.8007 4.8552 36 1 5.4279 7.1521 6.1720 37 1 2.5012 5.0631 3.1319 38 1 2.8028 3.4942 2.2654 39 1 0.4720 3.3515 1.5232 40 1 0.4959 5.1562 1.7235 41 1 -0.7634 3.3908 3.6389 42 1 -0.0385 4.9894 4.1099 43 1 1.9313 -2.8018 2.1026 44 1 1.8554 -2.7357 0.2611 45 1 3.9556 -1.3130 0.2251 46 1 4.0323 -1.3783 2.0666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203420949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:02 Heat of formation + Delta-G solvation = -56.061698 kcal Electronic energy + Delta-G solvation = -29798.840309 eV Core-core repulsion = 25554.752563 eV Total energy + Delta-G solvation = -4244.087746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.32594 -47.32129 -40.78086 -39.52390 -36.71927 -34.91422 -34.14793 -32.50647 -31.60713 -29.85407 -25.90441 -25.50615 -24.50805 -24.10524 -23.18180 -22.84859 -21.52633 -20.40084 -20.04929 -18.51057 -17.69170 -17.58096 -17.10400 -16.60499 -16.16015 -16.09553 -15.19366 -15.12645 -14.64380 -14.50886 -14.27222 -14.12599 -13.90445 -13.59018 -13.40372 -13.04819 -12.89639 -12.87795 -12.54577 -12.46222 -12.13478 -12.06812 -11.88530 -11.82762 -11.51518 -11.32827 -11.07876 -10.95644 -10.81486 -10.75481 -10.69171 -10.23359 -10.08902 -10.04493 -9.89889 -9.66393 -9.44944 -8.84086 -8.75811 -6.97711 -5.81245 -3.09479 2.27525 2.93866 3.14121 3.37991 3.41189 3.47657 3.49357 3.75985 3.93862 4.18186 4.42845 4.55014 4.57163 4.65941 4.73495 4.89645 5.01963 5.08184 5.16411 5.20167 5.24032 5.25685 5.34603 5.42828 5.49234 5.52384 5.64182 5.72091 5.81814 5.89124 5.99581 6.01296 6.13168 6.16942 6.23233 6.31646 6.39214 6.52753 6.58037 6.77053 6.89996 7.04335 7.55447 7.68820 8.14404 8.37605 9.49363 10.06472 10.41403 11.41175 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.003193 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.505741 B = 8767.581123 C = 9107.824357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.333 3.667 3 F -0.191 7.191 4 F -0.194 7.194 5 C -0.225 4.225 6 C 0.555 3.445 7 O -0.532 6.532 8 N -0.700 5.700 9 C 0.143 3.857 10 H 0.111 0.889 11 C -0.174 4.174 12 C 0.182 3.818 13 H 0.081 0.919 14 N -0.706 5.706 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.124 4.124 24 C -0.107 4.107 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.142 4.142 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.404 0.596 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 -14.520 -14.813 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.297 3.703 3 F -0.172 7.172 4 F -0.175 7.175 5 C -0.230 4.230 6 C 0.339 3.661 7 O -0.409 6.409 8 N -0.351 5.351 9 C 0.038 3.962 10 H 0.129 0.871 11 C -0.216 4.216 12 C 0.069 3.931 13 H 0.099 0.901 14 N -0.344 5.344 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.127 4.127 24 C -0.145 4.145 25 C -0.177 4.177 26 C -0.159 4.159 27 C -0.160 4.160 28 C -0.179 4.179 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.242 0.758 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.435 -14.846 -14.052 22.114 hybrid contribution 0.858 0.883 0.196 1.246 sum -7.577 -13.963 -13.856 21.080 Atomic orbital electron populations 1.22726 0.90671 1.05769 1.05605 1.20072 0.93765 0.75109 0.81384 1.93032 1.90576 1.36992 1.96555 1.93005 1.90635 1.80997 1.52845 1.22506 1.07073 0.99037 0.94338 1.18881 0.79296 0.82160 0.85785 1.90708 1.40603 1.61457 1.48151 1.46079 1.52043 1.12387 1.24604 1.22241 0.98798 0.90827 0.84300 0.87119 1.24294 0.98460 1.01425 0.97456 1.21139 0.91857 0.87693 0.92417 0.90145 1.42322 1.43274 1.40415 1.08370 1.19358 1.17215 1.14214 0.86593 0.90997 1.24740 0.99237 0.99434 0.97355 1.69661 1.27944 1.31221 1.29188 0.86130 0.77544 0.78708 0.83891 1.20509 1.21890 1.21878 1.23490 0.97591 0.92984 0.98610 1.22438 0.95693 1.01129 0.95252 1.22827 0.97198 1.01155 0.96474 1.22680 0.95994 1.00863 0.96336 1.23068 0.99483 0.88248 1.05178 1.23176 0.89187 1.00406 1.05149 0.89184 0.89568 0.88940 0.75826 0.90173 0.92061 0.77848 0.93519 0.88372 0.92494 0.90995 0.91888 0.92202 0.89517 0.86501 0.87123 0.86944 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 9.28 37.15 0.34 -1.23 16 2 C 0.33 3.32 2.08 -26.73 -0.06 3.26 16 3 F -0.19 -2.17 15.48 2.25 0.03 -2.13 16 4 F -0.19 -1.94 15.63 2.25 0.04 -1.91 16 5 C -0.23 -2.35 1.76 -155.66 -0.27 -2.63 16 6 C 0.55 7.40 6.26 -10.98 -0.07 7.34 16 7 O -0.53 -8.68 16.17 5.55 0.09 -8.59 16 8 N -0.70 -9.37 5.05 -53.37 -0.27 -9.64 16 9 C 0.14 2.15 4.09 -67.48 -0.28 1.87 16 10 H 0.11 1.71 7.53 -51.93 -0.39 1.32 16 11 C -0.17 -3.04 7.68 -25.75 -0.20 -3.24 16 12 C 0.18 3.49 4.36 -67.49 -0.29 3.20 16 13 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 14 N -0.71 -16.93 5.30 -52.99 -0.28 -17.21 16 15 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 19 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C -0.12 -1.94 1.06 -154.71 -0.16 -2.11 16 24 C -0.11 -1.65 6.78 -26.28 -0.18 -1.83 16 25 C -0.14 -1.84 8.08 -25.75 -0.21 -2.05 16 26 C -0.12 -1.73 7.84 -26.28 -0.21 -1.94 16 27 C -0.12 -1.06 9.49 -26.70 -0.25 -1.31 16 28 C -0.14 -1.27 9.67 -26.69 -0.26 -1.53 16 29 H 0.09 0.83 7.46 -51.93 -0.39 0.44 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 5.19 5.41 -40.82 -0.22 4.97 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.39 9.76 6.23 -40.82 -0.25 9.51 16 36 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.10 1.77 7.03 -51.93 -0.36 1.40 16 38 H 0.06 0.82 6.42 -51.93 -0.33 0.49 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.12 1.08 7.87 -51.93 -0.41 0.67 16 44 H 0.11 0.77 7.82 -51.93 -0.41 0.36 16 45 H 0.11 0.89 7.74 -51.93 -0.40 0.49 16 46 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -30.24 376.49 -8.29 -38.53 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -6.94 Total: 14.28 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.34 Total: -9.32 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.17 Total: -53.58 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.24 -8.29 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203420949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.533 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds