Wall clock time and date at job start Tue Mar 31 2020 15:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 109.46910 * 2 1 4 4 C 1.46906 * 109.46959 * 240.00213 * 2 1 3 5 5 C 1.46903 * 109.47447 * 120.00297 * 2 1 3 6 6 C 1.53004 * 109.47016 * 62.20068 * 5 2 1 7 7 H 1.08996 * 109.46861 * 173.92775 * 6 5 2 8 8 C 1.50702 * 109.46856 * 293.92337 * 6 5 2 9 9 H 1.08000 * 119.99705 * 114.65653 * 8 6 5 10 10 C 1.37867 * 120.00395 * 294.64989 * 8 6 5 11 11 N 1.31516 * 119.99754 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00299 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47073 * 60.00293 * 12 10 8 14 14 H 1.48498 * 109.47188 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47325 * 300.00025 * 12 10 8 16 16 O 1.42901 * 109.47129 * 53.92461 * 6 5 2 17 17 C 1.35671 * 117.00032 * 94.82116 * 16 6 5 18 18 C 1.39383 * 120.03309 * 174.90917 * 17 16 6 19 19 C 1.38390 * 118.02231 * 180.02562 * 18 17 16 20 20 C 1.39863 * 117.94636 * 359.97438 * 19 18 17 21 21 C 1.48331 * 120.12020 * 179.97438 * 20 19 18 22 22 C 1.39365 * 120.12558 * 180.02562 * 21 20 19 23 23 C 1.38007 * 119.87749 * 179.97438 * 22 21 20 24 24 C 1.38332 * 120.12145 * 359.97438 * 23 22 21 25 25 C 1.38324 * 120.25154 * 359.97438 * 24 23 22 26 26 C 1.38010 * 120.11990 * 0.02562 * 25 24 23 27 27 N 1.32614 * 119.76157 * 0.25621 * 20 19 18 28 28 N 1.28349 * 122.10791 * 359.46165 * 27 20 19 29 29 H 1.09000 * 109.46803 * 283.52690 * 1 2 3 30 30 H 1.08993 * 109.47406 * 43.53545 * 1 2 3 31 31 H 1.09004 * 109.47079 * 163.53296 * 1 2 3 32 32 H 1.09003 * 109.47019 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47198 * 300.00422 * 3 2 1 34 34 H 1.08998 * 109.47296 * 60.00699 * 3 2 1 35 35 H 1.09004 * 109.47097 * 318.95644 * 4 2 1 36 36 H 1.09006 * 109.47055 * 78.95198 * 4 2 1 37 37 H 1.08990 * 109.47158 * 198.95671 * 4 2 1 38 38 H 1.08993 * 109.46870 * 302.20153 * 5 2 1 39 39 H 1.09001 * 109.46858 * 182.19781 * 5 2 1 40 40 H 0.97007 * 120.00334 * 179.97438 * 11 10 8 41 41 H 1.08003 * 120.98880 * 359.97438 * 18 17 16 42 42 H 1.07993 * 121.02986 * 179.97438 * 19 18 17 43 43 H 1.08000 * 120.06240 * 359.95358 * 22 21 20 44 44 H 1.07997 * 119.94027 * 180.02562 * 23 22 21 45 45 H 1.08005 * 119.87383 * 179.72685 * 24 23 22 46 46 H 1.07996 * 119.93816 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.05990 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9588 -0.6926 1.1994 6 6 1.4945 -2.1502 1.1719 7 1 1.9459 -2.6910 2.0037 8 6 -0.0066 -2.2016 1.2949 9 1 -0.6032 -2.5712 0.4740 10 6 -0.6182 -1.7771 2.4552 11 7 0.1084 -1.3267 3.4547 12 14 -2.4788 -1.8415 2.6079 13 1 -2.9400 -3.2444 2.4520 14 1 -2.8838 -1.3335 3.9432 15 1 -3.0918 -0.9985 1.5502 16 8 1.8925 -2.7537 -0.0607 17 6 3.0616 -3.4421 -0.0603 18 6 3.4581 -4.1444 -1.1971 19 6 4.6578 -4.8326 -1.1507 20 6 5.3983 -4.7799 0.0347 21 6 6.6908 -5.5003 0.1375 22 6 7.4285 -5.4483 1.3188 23 6 8.6302 -6.1209 1.4091 24 6 9.1026 -6.8461 0.3300 25 6 8.3742 -6.9021 -0.8446 26 6 7.1712 -6.2333 -0.9460 27 7 4.9378 -4.0883 1.0682 28 7 3.8271 -3.4471 1.0196 29 1 -0.3633 0.2404 0.9992 30 1 -0.3634 0.7449 -0.7078 31 1 -0.3633 -0.9855 -0.2913 32 1 3.0487 1.3850 -0.0005 33 1 1.5952 1.8988 -0.8900 34 1 1.5954 1.8988 0.8900 35 1 1.3490 -1.5773 -1.3825 36 1 1.8941 -0.0230 -2.0573 37 1 2.9960 -0.9909 -1.0487 38 1 1.5636 -0.2021 2.0889 39 1 3.0481 -0.6585 1.2192 40 1 -0.3219 -1.0276 4.2710 41 1 2.8467 -4.1520 -2.0874 42 1 5.0114 -5.3931 -2.0034 43 1 7.0605 -4.8825 2.1619 44 1 9.2024 -6.0816 2.3242 45 1 10.0457 -7.3673 0.4035 46 1 8.7480 -7.4694 -1.6841 47 1 6.6035 -6.2774 -1.8637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226504006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:20 Heat of formation + Delta-G solvation = 162.322821 kcal Electronic energy + Delta-G solvation = -28496.799049 eV Core-core repulsion = 24764.640525 eV Total energy + Delta-G solvation = -3732.158524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.34883 -42.07890 -40.05696 -39.05106 -35.27175 -34.63235 -33.60435 -31.90990 -31.49040 -30.42991 -30.15087 -30.01405 -27.88051 -26.09589 -25.53316 -24.56591 -23.47408 -22.71441 -22.60623 -19.88523 -19.08048 -18.54909 -18.32912 -18.30246 -18.10210 -17.06390 -16.92938 -16.83221 -16.28584 -15.63997 -15.43732 -15.26632 -15.18183 -14.99037 -14.87942 -14.54109 -14.42413 -14.08111 -13.98379 -13.87530 -13.79492 -13.59843 -13.52193 -13.17358 -13.02738 -12.73881 -12.54865 -12.36729 -12.10592 -12.09204 -11.98856 -11.69912 -11.43101 -11.13104 -10.55157 -10.46432 -10.21050 -9.90331 -9.22669 -7.99084 -6.12169 -0.50065 -0.24664 0.45651 0.55928 0.74135 1.88514 1.90364 2.09427 2.14574 2.45860 2.55713 2.56531 2.61254 2.80156 2.96096 3.00908 3.26857 3.29820 3.33246 3.42975 3.50024 3.63912 3.71712 3.79511 3.82854 3.91147 3.95049 4.03799 4.04548 4.05499 4.12337 4.18633 4.32951 4.37494 4.42551 4.47989 4.56467 4.71950 4.81680 4.84319 4.91084 5.06025 5.12603 5.30662 5.49162 5.56949 5.58376 5.85133 5.98495 6.05571 6.29624 6.94809 7.57895 7.71262 9.06410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.253 5.253 3 C -0.042 4.042 4 C -0.035 4.035 5 C -0.016 4.016 6 C 0.196 3.804 7 H 0.098 0.902 8 C -0.561 4.561 9 H 0.084 0.916 10 C 0.074 3.926 11 N -0.869 5.869 12 Si 0.907 3.093 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.267 1.267 16 O -0.303 6.303 17 C 0.257 3.743 18 C -0.138 4.138 19 C -0.079 4.079 20 C 0.077 3.923 21 C -0.046 4.046 22 C -0.081 4.081 23 C -0.122 4.122 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.102 4.102 27 N -0.195 5.195 28 N -0.287 5.287 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.286 0.714 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 6.366 -11.898 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 N 0.089 4.911 3 C -0.184 4.184 4 C -0.177 4.177 5 C -0.136 4.136 6 C 0.141 3.859 7 H 0.116 0.884 8 C -0.598 4.598 9 H 0.102 0.898 10 C -0.135 4.135 11 N -0.503 5.503 12 Si 0.731 3.269 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.192 1.192 16 O -0.209 6.209 17 C 0.073 3.927 18 C -0.167 4.167 19 C -0.107 4.107 20 C -0.069 4.069 21 C -0.048 4.048 22 C -0.100 4.100 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.121 4.121 27 N -0.039 5.039 28 N -0.143 5.143 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.170 0.830 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.561 7.078 -10.309 13.685 hybrid contribution -1.000 -0.559 -0.926 1.473 sum 4.560 6.519 -11.235 13.767 Atomic orbital electron populations 1.24658 0.75461 1.09371 1.07768 1.45823 1.16348 1.13344 1.15595 1.24029 1.04498 0.81821 1.08084 1.24332 1.04988 1.01756 0.86578 1.24772 1.01001 1.00375 0.87502 1.20616 0.97055 0.85543 0.82650 0.88417 1.20914 0.88031 1.47903 1.02912 0.89807 1.24975 1.00485 0.93740 0.94268 1.69729 1.37223 1.38066 1.05259 0.86329 0.81564 0.80213 0.78756 1.18943 1.20074 1.19222 1.86422 1.32531 1.63249 1.38669 1.21670 0.88502 0.90783 0.91792 1.21555 0.97727 0.98143 0.99280 1.22295 0.93072 0.96540 0.98795 1.21232 0.95984 0.98032 0.91608 1.18224 0.92207 0.98987 0.95339 1.21368 0.93816 0.97603 0.97170 1.21220 0.96218 0.97423 0.99135 1.21362 0.99806 0.98134 0.93218 1.21090 0.94828 0.99770 0.98285 1.21172 0.96450 0.96762 0.97733 1.73005 1.04590 1.02695 1.23569 1.73118 1.01360 1.17769 1.22100 0.86378 0.89841 0.83411 0.87413 0.87159 0.86682 0.84170 0.88373 0.88427 0.82966 0.88836 0.90348 0.82529 0.82600 0.84562 0.85385 0.85642 0.85441 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.18 6.87 60.07 0.41 0.59 16 2 N -0.25 1.77 0.05 -395.62 -0.02 1.75 16 3 C -0.04 0.42 7.89 60.06 0.47 0.90 16 4 C -0.04 0.28 6.96 60.07 0.42 0.70 16 5 C -0.02 0.03 4.08 -3.82 -0.02 0.02 16 6 C 0.20 0.44 2.09 -27.88 -0.06 0.38 16 7 H 0.10 0.67 6.92 -51.93 -0.36 0.31 16 8 C -0.56 -2.45 5.33 -34.44 -0.18 -2.63 16 9 H 0.08 0.35 6.97 -52.49 -0.37 -0.01 16 10 C 0.07 0.47 4.10 -17.82 -0.07 0.40 16 11 N -0.87 -6.93 11.71 55.43 0.65 -6.29 16 12 Si 0.91 5.72 29.54 -169.99 -5.02 0.70 16 13 H -0.26 -2.17 7.11 56.52 0.40 -1.76 16 14 H -0.28 -2.20 7.11 56.52 0.40 -1.80 16 15 H -0.27 -1.34 7.11 56.52 0.40 -0.94 16 16 O -0.30 -0.03 5.47 -18.72 -0.10 -0.13 16 17 C 0.26 0.30 6.90 -16.89 -0.12 0.18 16 18 C -0.14 0.18 10.14 -39.10 -0.40 -0.22 16 19 C -0.08 0.08 9.54 -38.92 -0.37 -0.29 16 20 C 0.08 0.14 6.81 -82.77 -0.56 -0.42 16 21 C -0.05 -0.07 5.88 -104.91 -0.62 -0.68 16 22 C -0.08 -0.15 9.58 -39.25 -0.38 -0.52 16 23 C -0.12 -0.07 10.03 -39.63 -0.40 -0.46 16 24 C -0.11 0.02 10.04 -39.52 -0.40 -0.37 16 25 C -0.12 0.07 10.03 -39.63 -0.40 -0.32 16 26 C -0.10 0.04 9.43 -39.25 -0.37 -0.33 16 27 N -0.19 -0.81 10.61 33.37 0.35 -0.46 16 28 N -0.29 -1.12 9.80 30.53 0.30 -0.82 16 29 H 0.12 -0.37 6.43 -51.93 -0.33 -0.70 16 30 H 0.08 -0.73 7.86 -51.93 -0.41 -1.14 16 31 H 0.15 -0.55 4.68 -51.93 -0.24 -0.80 16 32 H 0.11 -1.14 8.14 -51.93 -0.42 -1.57 16 33 H 0.11 -1.33 7.89 -51.93 -0.41 -1.74 16 34 H 0.11 -1.12 8.14 -51.93 -0.42 -1.54 16 35 H 0.14 -0.90 5.36 -51.93 -0.28 -1.18 16 36 H 0.10 -1.06 7.81 -51.93 -0.41 -1.47 16 37 H 0.10 -0.70 6.92 -51.93 -0.36 -1.05 16 38 H 0.15 0.00 6.22 -51.93 -0.32 -0.33 16 39 H 0.09 -0.25 8.05 -51.93 -0.42 -0.67 16 40 H 0.29 2.44 8.31 -40.82 -0.34 2.10 16 41 H 0.16 -0.68 8.06 -52.48 -0.42 -1.11 16 42 H 0.16 -0.65 6.29 -52.49 -0.33 -0.98 16 43 H 0.14 0.28 7.56 -52.49 -0.40 -0.12 16 44 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 45 H 0.13 -0.26 8.06 -52.48 -0.42 -0.68 16 46 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 47 H 0.13 -0.38 6.24 -52.49 -0.33 -0.70 16 LS Contribution 366.22 15.07 5.52 5.52 Total: 0.00 -14.04 366.22 -7.98 -22.02 By element: Atomic # 1 Polarization: -12.58 SS G_CDS: -6.63 Total: -19.21 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.03 Total: -3.09 kcal Atomic # 7 Polarization: -7.09 SS G_CDS: 1.28 Total: -5.81 kcal Atomic # 8 Polarization: -0.03 SS G_CDS: -0.10 Total: -0.13 kcal Atomic # 14 Polarization: 5.72 SS G_CDS: -5.02 Total: 0.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -14.04 -7.98 -22.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226504006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.339 kcal (2) G-P(sol) polarization free energy of solvation -14.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds