Wall clock time and date at job start Tue Mar 31 2020 15:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00109 * 2 1 4 4 C 1.50702 * 119.99647 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47267 * 359.97438 * 4 2 1 6 6 C 1.52994 * 109.46747 * 239.99669 * 4 2 1 7 7 C 1.53002 * 109.47155 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46867 * 60.00371 * 7 6 4 9 9 H 1.08999 * 109.47501 * 59.99900 * 8 7 6 10 10 C 1.53000 * 109.46883 * 180.02562 * 8 7 6 11 11 C 1.53003 * 109.46793 * 299.99665 * 8 7 6 12 12 C 1.53002 * 109.47052 * 119.99734 * 4 2 1 13 13 H 1.09005 * 109.47137 * 60.00190 * 12 4 2 14 14 O 1.42900 * 109.47392 * 299.99798 * 12 4 2 15 15 C 1.35656 * 117.00162 * 155.11248 * 14 12 4 16 16 C 1.39170 * 119.90417 * 5.44210 * 15 14 12 17 17 C 1.37591 * 120.09407 * 180.02562 * 16 15 14 18 18 C 1.39957 * 119.90469 * 359.97438 * 17 16 15 19 19 C 1.47567 * 120.09234 * 180.02562 * 18 17 16 20 20 O 1.21817 * 120.00231 * 0.02562 * 19 18 17 21 21 C 1.41759 * 119.99756 * 180.02562 * 19 18 17 22 22 H 1.07999 * 119.99985 * 0.27552 * 21 19 18 23 23 C 1.40346 * 120.00107 * 179.97438 * 21 19 18 24 24 N 1.30538 * 119.99722 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 120.00239 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47125 * 90.00235 * 25 23 21 27 27 H 1.48496 * 109.47075 * 210.00198 * 25 23 21 28 28 H 1.48500 * 109.47043 * 329.99848 * 25 23 21 29 29 C 1.39946 * 119.81019 * 0.27902 * 18 17 16 30 30 C 1.37598 * 119.90656 * 359.44216 * 29 18 17 31 31 H 1.08002 * 120.00558 * 179.97438 * 1 2 3 32 32 H 1.08008 * 119.99807 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.47714 * 270.00334 * 3 2 1 34 34 H 1.09005 * 109.47234 * 30.00547 * 3 2 1 35 35 H 1.09004 * 109.47180 * 150.00136 * 3 2 1 36 36 H 1.08997 * 109.47563 * 60.00242 * 6 4 2 37 37 H 1.09000 * 109.47858 * 300.00136 * 6 4 2 38 38 H 1.08999 * 109.47141 * 300.00051 * 7 6 4 39 39 H 1.08997 * 109.47333 * 179.97438 * 7 6 4 40 40 H 1.09002 * 109.47222 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.47012 * 299.99274 * 10 8 7 42 42 H 1.08999 * 109.47446 * 59.99484 * 10 8 7 43 43 H 1.08999 * 109.47289 * 300.00365 * 11 8 7 44 44 H 1.08998 * 109.46919 * 179.97438 * 11 8 7 45 45 H 1.08002 * 119.95209 * 0.04235 * 16 15 14 46 46 H 1.08002 * 120.05043 * 179.97438 * 17 16 15 47 47 H 0.97001 * 119.99520 * 180.02562 * 24 23 21 48 48 H 1.08006 * 120.04510 * 179.69759 * 29 18 17 49 49 H 1.08001 * 119.95155 * 180.27990 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3551 -2.1336 -0.0005 6 6 2.9430 -1.3867 1.2486 7 6 3.7075 -2.7120 1.2484 8 6 4.5871 -2.7932 -0.0009 9 1 5.2957 -1.9650 -0.0008 10 6 5.3511 -4.1188 -0.0014 11 6 3.7074 -2.7117 -1.2501 12 6 2.9430 -1.3857 -1.2499 13 1 3.6514 -0.5573 -1.2496 14 8 2.1214 -1.3095 -2.4167 15 6 2.7055 -0.8521 -3.5524 16 6 4.0722 -0.5906 -3.5729 17 6 4.6686 -0.1260 -4.7226 18 6 3.8987 0.0830 -5.8725 19 6 4.5341 0.5806 -7.1080 20 8 5.7304 0.8097 -7.1280 21 6 3.7523 0.7921 -8.2714 22 1 2.6910 0.5933 -8.2523 23 6 4.3564 1.2659 -9.4463 24 7 5.6384 1.5113 -9.4677 25 14 3.3262 1.5453 -10.9792 26 1 2.8078 2.9369 -10.9803 27 1 4.1647 1.3285 -12.1854 28 1 2.1871 0.5926 -10.9904 29 6 2.5237 -0.1762 -5.8459 30 6 1.9364 -0.6461 -4.6937 31 1 -0.5401 -0.9353 -0.0004 32 1 -0.5400 0.9354 0.0004 33 1 2.2452 1.6198 -1.0276 34 1 1.4745 2.0647 0.5139 35 1 3.0160 1.1747 0.5138 36 1 2.3165 -1.3293 2.1386 37 1 3.6514 -0.5583 1.2490 38 1 2.9989 -3.5402 1.2483 39 1 4.3345 -2.7700 2.1381 40 1 5.9774 -4.1769 -0.8916 41 1 5.9778 -4.1773 0.8885 42 1 4.6422 -4.9468 -0.0017 43 1 2.9988 -3.5399 -1.2502 44 1 4.3341 -2.7690 -2.1401 45 1 4.6657 -0.7528 -2.6853 46 1 5.7292 0.0771 -4.7376 47 1 6.0558 1.8391 -10.2797 48 1 1.9252 -0.0116 -6.7297 49 1 0.8761 -0.8507 -4.6736 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:30 Heat of formation + Delta-G solvation = -66.103573 kcal Electronic energy + Delta-G solvation = -28059.458697 eV Core-core repulsion = 24336.872281 eV Total energy + Delta-G solvation = -3722.586416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.52171 -38.66544 -37.12389 -35.79664 -35.49080 -32.68169 -31.55229 -30.82375 -30.23098 -29.04372 -27.49881 -26.68085 -26.38983 -23.48919 -22.44661 -22.25165 -21.08564 -20.05128 -19.57840 -18.53961 -17.73882 -16.68676 -15.82311 -15.51861 -15.46032 -15.20794 -14.84538 -14.31653 -14.15777 -13.98358 -13.85495 -13.58303 -13.32925 -13.12282 -13.00600 -12.88953 -12.51068 -12.41906 -12.39033 -12.25060 -11.88433 -11.79148 -11.61437 -11.50158 -11.34343 -11.15363 -11.08650 -11.01235 -10.85392 -10.68869 -10.50899 -10.39877 -10.33413 -10.02703 -9.87445 -9.06629 -8.96680 -8.38491 -7.47040 -7.40808 -6.29704 -4.89727 1.89568 2.04140 2.17946 3.05484 3.13152 3.16599 3.36692 4.01100 4.05456 4.31255 4.41331 4.64281 4.66761 4.70553 4.87728 4.90114 5.00289 5.05418 5.13781 5.20174 5.36832 5.39276 5.43314 5.46102 5.48218 5.57128 5.57645 5.63883 5.72906 5.75350 5.80330 5.83051 5.83434 5.89569 5.94287 5.97721 6.01474 6.08365 6.10109 6.16791 6.23378 6.37810 6.56018 6.67860 6.79557 6.90327 7.07517 7.25739 7.39666 7.43048 7.91164 8.04632 8.79919 8.85615 10.32040 10.54328 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.002776 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.392090 B =10085.250074 C =10945.729626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.045 4.045 5 H 0.083 0.917 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.090 4.090 9 H 0.072 0.928 10 C -0.147 4.147 11 C -0.142 4.142 12 C 0.097 3.903 13 H 0.074 0.926 14 O -0.308 6.308 15 C 0.117 3.883 16 C -0.222 4.222 17 C -0.056 4.056 18 C -0.139 4.139 19 C 0.390 3.610 20 O -0.545 6.545 21 C -0.518 4.518 22 H 0.074 0.926 23 C 0.079 3.921 24 N -0.736 5.736 25 Si 0.906 3.094 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.261 1.261 29 C -0.057 4.057 30 C -0.167 4.167 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.274 0.726 48 H 0.135 0.865 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -6.635 20.560 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.113 4.113 3 C -0.179 4.179 4 C -0.063 4.063 5 H 0.101 0.899 6 C -0.146 4.146 7 C -0.154 4.154 8 C -0.109 4.109 9 H 0.090 0.910 10 C -0.204 4.204 11 C -0.179 4.179 12 C 0.040 3.960 13 H 0.092 0.908 14 O -0.222 6.222 15 C 0.072 3.928 16 C -0.240 4.240 17 C -0.074 4.074 18 C -0.140 4.140 19 C 0.286 3.714 20 O -0.435 6.435 21 C -0.549 4.549 22 H 0.092 0.908 23 C -0.144 4.144 24 N -0.365 5.365 25 Si 0.730 3.270 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.185 1.185 29 C -0.075 4.075 30 C -0.185 4.185 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.137 0.863 46 H 0.143 0.857 47 H 0.085 0.915 48 H 0.153 0.847 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.303 -6.548 20.540 22.461 hybrid contribution -0.474 0.121 -0.757 0.901 sum -6.778 -6.426 19.783 21.877 Atomic orbital electron populations 1.23612 0.95099 1.01623 1.02494 1.21547 0.95302 0.95009 0.99428 1.20888 1.00010 0.94503 1.02527 1.20323 0.96963 0.95941 0.93112 0.89891 1.21552 0.98381 0.98077 0.96610 1.21652 0.98541 0.97531 0.97640 1.21100 0.96889 0.98632 0.94245 0.90999 1.21814 1.00023 0.96721 1.01860 1.22215 0.99160 0.97855 0.98693 1.22301 0.92223 0.97779 0.83686 0.90841 1.85998 1.39246 1.80459 1.16531 1.19101 0.91440 0.95916 0.86297 1.21108 0.93712 1.09445 0.99755 1.21175 1.00214 0.94706 0.91322 1.21788 0.93826 1.00345 0.98030 1.18066 0.88527 0.79616 0.85217 1.90495 1.16648 1.51104 1.85248 1.20940 0.96610 1.41046 0.96289 0.90786 1.26013 0.94780 0.93303 1.00279 1.69968 1.10646 1.28053 1.27805 0.86383 0.80562 0.79610 0.80472 1.19391 1.20172 1.18468 1.21383 0.94782 0.94744 0.96567 1.20336 0.99450 1.07023 0.91715 0.88662 0.88612 0.91166 0.91879 0.91939 0.91092 0.91379 0.91703 0.91605 0.92399 0.92628 0.92648 0.90934 0.90685 0.86349 0.85670 0.91533 0.84744 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 13.91 29.01 0.40 -1.57 16 2 C -0.11 -1.20 4.51 -101.07 -0.46 -1.65 16 3 C -0.12 -1.24 9.39 36.00 0.34 -0.90 16 4 C -0.04 -0.45 2.10 -91.77 -0.19 -0.64 16 5 H 0.08 0.85 7.78 -51.93 -0.40 0.45 16 6 C -0.11 -0.86 5.03 -26.73 -0.13 -1.00 16 7 C -0.12 -0.86 5.20 -26.73 -0.14 -1.00 16 8 C -0.09 -0.78 2.72 -90.62 -0.25 -1.03 16 9 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 10 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 11 C -0.14 -1.54 4.46 -26.70 -0.12 -1.66 16 12 C 0.10 1.16 1.40 -26.70 -0.04 1.12 16 13 H 0.07 0.92 5.92 -51.93 -0.31 0.61 16 14 O -0.31 -4.72 9.41 -18.67 -0.18 -4.89 16 15 C 0.12 2.05 6.62 -38.89 -0.26 1.79 16 16 C -0.22 -3.95 8.21 -39.47 -0.32 -4.28 16 17 C -0.06 -1.20 9.59 -39.17 -0.38 -1.57 16 18 C -0.14 -3.30 5.89 -104.81 -0.62 -3.92 16 19 C 0.39 11.14 6.91 -34.43 -0.24 10.90 16 20 O -0.54 -17.47 14.89 5.08 0.08 -17.40 16 21 C -0.52 -14.29 8.86 -37.44 -0.33 -14.62 16 22 H 0.07 1.84 6.01 -52.49 -0.32 1.53 16 23 C 0.08 2.14 5.50 -17.31 -0.10 2.05 16 24 N -0.74 -21.29 11.73 55.57 0.65 -20.64 16 25 Si 0.91 19.31 29.56 -169.99 -5.03 14.28 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 28 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 29 C -0.06 -1.16 9.43 -39.18 -0.37 -1.53 16 30 C -0.17 -3.03 9.97 -39.47 -0.39 -3.42 16 31 H 0.10 0.92 7.83 -52.49 -0.41 0.51 16 32 H 0.10 0.91 8.04 -52.48 -0.42 0.49 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.06 0.56 6.64 -51.93 -0.34 0.22 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 6.80 -51.93 -0.35 0.18 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.93 6.90 -51.93 -0.36 0.57 16 45 H 0.12 1.80 5.40 -52.49 -0.28 1.52 16 46 H 0.13 2.75 7.65 -52.49 -0.40 2.35 16 47 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 48 H 0.13 2.64 6.19 -52.48 -0.33 2.32 16 49 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -32.23 388.64 -9.57 -41.80 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.71 Total: 4.77 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -3.24 Total: -23.77 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.65 Total: -20.64 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.10 Total: -22.29 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.23 -9.57 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.308 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds