Wall clock time and date at job start Tue Mar 31 2020 14:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46932 * 193.25936 * 3 2 1 5 5 O 1.42898 * 109.47512 * 313.26034 * 3 2 1 6 6 C 1.35641 * 116.99909 * 275.49848 * 5 3 2 7 7 C 1.38665 * 120.15932 * 5.14355 * 6 5 3 8 8 C 1.38093 * 120.09292 * 180.27512 * 7 6 5 9 9 C 1.38689 * 120.41326 * 0.02562 * 8 7 6 10 10 C 1.37702 * 120.32401 * 359.97438 * 9 8 7 11 11 C 1.39841 * 119.89917 * 0.02562 * 10 9 8 12 12 C 1.47535 * 120.20650 * 180.02562 * 11 10 9 13 13 O 1.21808 * 120.00124 * 179.97438 * 12 11 10 14 14 C 1.41835 * 119.99619 * 359.97438 * 12 11 10 15 15 H 1.07993 * 120.00081 * 359.97438 * 14 12 11 16 16 C 1.40330 * 119.99693 * 180.02562 * 14 12 11 17 17 N 1.30536 * 119.99802 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99724 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47324 * 60.00093 * 18 16 14 20 20 H 1.48504 * 109.47127 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47632 * 299.99897 * 18 16 14 22 22 C 1.53003 * 109.47538 * 73.26084 * 3 2 1 23 23 H 1.08995 * 109.46879 * 305.18871 * 22 3 2 24 24 C 1.52998 * 109.47174 * 185.18531 * 22 3 2 25 25 C 1.52996 * 109.47086 * 304.68193 * 24 22 3 26 26 C 1.53004 * 109.46622 * 65.18531 * 22 3 2 27 27 C 1.53005 * 109.46630 * 185.00072 * 26 22 3 28 28 C 1.53004 * 109.46992 * 179.97438 * 27 26 22 29 29 C 1.52994 * 109.47194 * 180.02562 * 28 27 26 30 30 H 4.18734 * 15.03831 * 359.97438 * 4 2 1 31 31 H 1.08002 * 119.95746 * 0.27351 * 7 6 5 32 32 H 1.07996 * 119.79454 * 180.02562 * 8 7 6 33 33 H 1.07997 * 119.83733 * 180.02562 * 9 8 7 34 34 H 1.08002 * 120.05242 * 179.97438 * 10 9 8 35 35 H 0.97003 * 120.00133 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47084 * 64.68324 * 24 22 3 37 37 H 1.09007 * 109.46745 * 184.68449 * 24 22 3 38 38 H 1.09002 * 109.46854 * 176.68935 * 25 24 22 39 39 H 1.08999 * 109.47429 * 296.68372 * 25 24 22 40 40 H 1.09001 * 109.47453 * 56.69053 * 25 24 22 41 41 H 1.08997 * 109.47099 * 305.00046 * 26 22 3 42 42 H 1.08998 * 109.47093 * 65.00732 * 26 22 3 43 43 H 1.08997 * 109.47358 * 299.99815 * 27 26 22 44 44 H 1.08998 * 109.46844 * 60.00507 * 27 26 22 45 45 H 1.08997 * 109.46999 * 300.00134 * 28 27 26 46 46 H 1.08998 * 109.46901 * 59.99814 * 28 27 26 47 47 H 1.08998 * 109.47578 * 59.99947 * 29 28 27 48 48 H 1.09001 * 109.47350 * 180.02562 * 29 28 27 49 49 H 1.08999 * 109.46786 * 300.00318 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0011 0.2357 5 8 3.1228 -0.9224 0.9811 6 6 3.2188 -0.4706 2.2565 7 6 2.7630 0.7978 2.5823 8 6 2.8665 1.2586 3.8800 9 6 3.4259 0.4598 4.8661 10 6 3.8840 -0.8025 4.5615 11 6 3.7858 -1.2825 3.2517 12 6 4.2739 -2.6342 2.9180 13 8 4.1861 -3.0487 1.7760 14 6 4.8454 -3.4509 3.9269 15 1 4.9237 -3.0832 4.9393 16 6 5.3102 -4.7364 3.6094 17 7 5.2161 -5.1805 2.3855 18 14 6.0636 -5.8117 4.9380 19 1 5.0639 -6.0465 6.0107 20 1 6.4721 -7.1125 4.3494 21 1 7.2531 -5.1314 5.5102 22 6 3.1563 -0.4146 -1.3814 23 1 2.7195 -1.3745 -1.6565 24 6 4.6808 -0.5393 -1.3456 25 6 5.2883 0.7734 -0.8469 26 6 2.7550 0.6426 -2.4121 27 6 3.1553 0.1687 -3.8108 28 6 2.7535 1.2255 -4.8417 29 6 3.1532 0.7514 -6.2404 30 1 -1.0499 -0.0010 -0.0007 31 1 2.3265 1.4264 1.8202 32 1 2.5096 2.2471 4.1285 33 1 3.5019 0.8294 5.8781 34 1 4.3193 -1.4207 5.3328 35 1 5.5370 -6.0692 2.1660 36 1 4.9634 -1.3491 -0.6730 37 1 5.0514 -0.7534 -2.3481 38 1 6.3699 0.6653 -0.7655 39 1 5.0550 1.5723 -1.5508 40 1 4.8729 1.0177 0.1308 41 1 1.6764 0.7952 -2.3750 42 1 3.2628 1.5805 -2.1872 43 1 4.2339 0.0161 -3.8479 44 1 2.6476 -0.7692 -4.0357 45 1 1.6749 1.3777 -4.8045 46 1 3.2608 2.1637 -4.6169 47 1 2.6456 -0.1866 -6.4650 48 1 2.8673 1.5045 -6.9748 49 1 4.2318 0.5989 -6.2778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:05 Heat of formation + Delta-G solvation = -23.414654 kcal Electronic energy + Delta-G solvation = -28348.469816 eV Core-core repulsion = 24627.734531 eV Total energy + Delta-G solvation = -3720.735285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.96011 -38.09579 -36.47979 -35.93483 -34.26051 -32.82574 -32.54484 -30.52881 -29.97522 -29.37390 -27.87098 -26.60057 -24.91304 -23.50028 -22.80909 -21.65297 -21.09089 -19.82134 -19.21629 -18.28557 -17.47774 -16.47355 -15.90356 -15.58690 -15.44423 -15.20563 -14.60632 -14.39346 -14.12839 -13.84246 -13.60607 -13.26919 -13.22227 -13.06933 -12.62801 -12.53576 -12.44386 -12.17616 -12.06574 -11.58749 -11.48723 -11.37488 -11.28154 -11.19760 -11.07077 -10.91619 -10.84484 -10.73496 -10.69629 -10.57599 -10.37206 -10.31652 -10.22527 -10.08716 -9.98649 -9.67164 -8.90371 -8.17729 -7.44297 -7.31279 -6.19511 -4.79767 1.83430 2.09003 2.76506 2.94144 3.10924 3.16114 3.17943 3.93724 4.06209 4.10802 4.41031 4.70915 4.75703 4.81237 4.92212 5.04016 5.15131 5.26575 5.28723 5.36140 5.43865 5.51733 5.59060 5.62424 5.66132 5.68433 5.76904 5.78480 5.87815 5.90883 5.91843 5.94454 5.96747 6.01748 6.10357 6.17816 6.21481 6.27918 6.33880 6.36654 6.48148 6.57125 6.71693 6.84272 6.94985 6.97749 7.18598 7.33127 7.50491 7.72444 8.10689 8.13395 8.88238 8.93606 10.41898 10.65465 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.003596 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.802283 B = 7784.486663 C = 9195.107673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.190 3.810 4 H 0.089 0.911 5 O -0.247 6.247 6 C 0.148 3.852 7 C -0.226 4.226 8 C -0.093 4.093 9 C -0.175 4.175 10 C -0.060 4.060 11 C -0.134 4.134 12 C 0.392 3.608 13 O -0.516 6.516 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.082 3.918 17 N -0.737 5.737 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.071 4.071 23 H 0.083 0.917 24 C -0.121 4.121 25 C -0.153 4.153 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.153 4.153 30 H 0.217 0.783 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.272 0.728 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 12.823 -7.812 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.199 4.199 3 C 0.133 3.867 4 H 0.106 0.894 5 O -0.159 6.159 6 C 0.102 3.898 7 C -0.245 4.245 8 C -0.111 4.111 9 C -0.193 4.193 10 C -0.078 4.078 11 C -0.136 4.136 12 C 0.285 3.715 13 O -0.403 6.403 14 C -0.553 4.553 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.366 5.366 18 Si 0.727 3.273 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.090 4.090 23 H 0.102 0.898 24 C -0.158 4.158 25 C -0.210 4.210 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.162 4.162 29 C -0.210 4.210 30 H 0.234 0.766 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.027 12.315 -8.623 15.564 hybrid contribution -0.121 -0.153 0.985 1.004 sum -4.148 12.162 -7.638 14.949 Atomic orbital electron populations 1.24876 0.95789 1.00369 0.99850 1.23739 0.95010 1.00484 1.00670 1.19351 0.82902 0.94389 0.90047 0.89380 1.86615 1.78536 1.36878 1.13840 1.19418 0.94060 0.91760 0.84570 1.21080 1.08797 0.96557 0.98050 1.20794 0.98934 0.98904 0.92498 1.20949 1.03884 0.95588 0.98866 1.21408 0.96131 0.94579 0.95722 1.21569 1.00714 0.99914 0.91359 1.17960 0.80864 0.82992 0.89670 1.90543 1.54458 1.73059 1.22254 1.20861 1.37759 0.99508 0.97206 0.91121 1.25938 0.94352 0.98243 0.95582 1.69956 1.31634 1.16314 1.18719 0.86496 0.80118 0.79115 0.81564 1.19026 1.20373 1.18993 1.21127 0.97143 1.00085 0.90608 0.89817 1.21552 0.93021 0.99253 1.02022 1.21852 1.00884 0.97515 1.00794 1.21639 1.01172 0.98353 0.93999 1.21644 1.01829 0.98627 0.93594 1.21527 1.01047 0.98836 0.94741 1.21777 1.01488 1.01079 0.96674 0.76635 0.86535 0.86968 0.86773 0.84765 0.91647 0.89351 0.91706 0.92704 0.93127 0.92883 0.91906 0.91546 0.91349 0.91887 0.92271 0.92188 0.92763 0.93056 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 19.25 29.55 0.57 -2.19 16 2 C -0.20 -3.30 10.82 -37.12 -0.40 -3.70 16 3 C 0.19 3.25 1.06 -29.52 -0.03 3.22 16 4 H 0.09 1.38 4.78 -51.93 -0.25 1.13 16 5 O -0.25 -5.53 7.06 -40.46 -0.29 -5.81 16 6 C 0.15 3.28 6.60 -38.61 -0.25 3.03 16 7 C -0.23 -4.14 8.68 -39.48 -0.34 -4.48 16 8 C -0.09 -1.54 10.04 -39.47 -0.40 -1.93 16 9 C -0.17 -3.00 10.02 -39.61 -0.40 -3.40 16 10 C -0.06 -1.24 9.43 -39.18 -0.37 -1.61 16 11 C -0.13 -3.25 5.90 -104.69 -0.62 -3.87 16 12 C 0.39 11.25 6.91 -34.42 -0.24 11.02 16 13 O -0.52 -16.40 13.71 -16.74 -0.23 -16.63 16 14 C -0.52 -14.47 8.86 -37.42 -0.33 -14.80 16 15 H 0.07 1.77 6.02 -52.49 -0.32 1.46 16 16 C 0.08 2.21 5.50 -17.32 -0.10 2.12 16 17 N -0.74 -21.36 11.73 55.57 0.65 -20.71 16 18 Si 0.90 19.49 29.56 -169.99 -5.03 14.47 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 22 C -0.07 -1.08 1.92 -90.62 -0.17 -1.25 16 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 24 C -0.12 -1.89 5.29 -26.73 -0.14 -2.03 16 25 C -0.15 -2.14 9.21 37.16 0.34 -1.80 16 26 C -0.11 -1.34 4.43 -26.73 -0.12 -1.46 16 27 C -0.12 -1.25 4.98 -26.73 -0.13 -1.38 16 28 C -0.12 -1.10 5.93 -26.73 -0.16 -1.26 16 29 C -0.15 -1.24 9.91 37.15 0.37 -0.88 16 30 H 0.22 2.21 7.80 -54.09 -0.42 1.79 16 31 H 0.12 1.89 5.67 -52.49 -0.30 1.59 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.13 2.63 6.20 -52.49 -0.33 2.30 16 35 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 36 H 0.09 1.77 7.71 -51.93 -0.40 1.37 16 37 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.58 6.61 -51.93 -0.34 0.24 16 40 H 0.05 0.81 6.28 -51.93 -0.33 0.48 16 41 H 0.06 0.74 7.24 -51.93 -0.38 0.36 16 42 H 0.07 0.72 6.40 -51.93 -0.33 0.39 16 43 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -33.15 395.21 -9.27 -42.42 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.42 Total: 6.96 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.92 Total: -26.65 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.65 Total: -20.71 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.52 Total: -22.44 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.15 -9.27 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.002 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds