Wall clock time and date at job start Tue Mar 31 2020 14:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46932 * 193.25936 * 3 2 1 5 5 O 1.42898 * 109.47512 * 313.26034 * 3 2 1 6 6 C 1.35641 * 116.99909 * 275.49848 * 5 3 2 7 7 C 1.38665 * 120.15932 * 5.14355 * 6 5 3 8 8 C 1.38093 * 120.09292 * 180.27512 * 7 6 5 9 9 C 1.38689 * 120.41326 * 0.02562 * 8 7 6 10 10 C 1.37702 * 120.32401 * 359.97438 * 9 8 7 11 11 C 1.39841 * 119.89917 * 0.02562 * 10 9 8 12 12 C 1.47535 * 120.20650 * 180.02562 * 11 10 9 13 13 O 1.21808 * 120.00124 * 179.97438 * 12 11 10 14 14 C 1.41835 * 119.99619 * 359.97438 * 12 11 10 15 15 H 1.07993 * 120.00081 * 359.97438 * 14 12 11 16 16 C 1.40330 * 119.99693 * 180.02562 * 14 12 11 17 17 N 1.30536 * 119.99802 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99724 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47324 * 60.00093 * 18 16 14 20 20 H 1.48504 * 109.47127 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47632 * 299.99897 * 18 16 14 22 22 C 1.53003 * 109.47538 * 73.26084 * 3 2 1 23 23 H 1.08995 * 109.46879 * 305.18871 * 22 3 2 24 24 C 1.52998 * 109.47174 * 185.18531 * 22 3 2 25 25 C 1.52996 * 109.47086 * 304.68193 * 24 22 3 26 26 C 1.53004 * 109.46622 * 65.18531 * 22 3 2 27 27 C 1.53005 * 109.46630 * 185.00072 * 26 22 3 28 28 C 1.53004 * 109.46992 * 179.97438 * 27 26 22 29 29 C 1.52994 * 109.47194 * 180.02562 * 28 27 26 30 30 H 4.18734 * 15.03831 * 359.97438 * 4 2 1 31 31 H 1.08002 * 119.95746 * 0.27351 * 7 6 5 32 32 H 1.07996 * 119.79454 * 180.02562 * 8 7 6 33 33 H 1.07997 * 119.83733 * 180.02562 * 9 8 7 34 34 H 1.08002 * 120.05242 * 179.97438 * 10 9 8 35 35 H 0.97003 * 120.00133 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47084 * 64.68324 * 24 22 3 37 37 H 1.09007 * 109.46745 * 184.68449 * 24 22 3 38 38 H 1.09002 * 109.46854 * 176.68935 * 25 24 22 39 39 H 1.08999 * 109.47429 * 296.68372 * 25 24 22 40 40 H 1.09001 * 109.47453 * 56.69053 * 25 24 22 41 41 H 1.08997 * 109.47099 * 305.00046 * 26 22 3 42 42 H 1.08998 * 109.47093 * 65.00732 * 26 22 3 43 43 H 1.08997 * 109.47358 * 299.99815 * 27 26 22 44 44 H 1.08998 * 109.46844 * 60.00507 * 27 26 22 45 45 H 1.08997 * 109.46999 * 300.00134 * 28 27 26 46 46 H 1.08998 * 109.46901 * 59.99814 * 28 27 26 47 47 H 1.08998 * 109.47578 * 59.99947 * 29 28 27 48 48 H 1.09001 * 109.47350 * 180.02562 * 29 28 27 49 49 H 1.08999 * 109.46786 * 300.00318 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0011 0.2357 5 8 3.1228 -0.9224 0.9811 6 6 3.2188 -0.4706 2.2565 7 6 2.7630 0.7978 2.5823 8 6 2.8665 1.2586 3.8800 9 6 3.4259 0.4598 4.8661 10 6 3.8840 -0.8025 4.5615 11 6 3.7858 -1.2825 3.2517 12 6 4.2739 -2.6342 2.9180 13 8 4.1861 -3.0487 1.7760 14 6 4.8454 -3.4509 3.9269 15 1 4.9237 -3.0832 4.9393 16 6 5.3102 -4.7364 3.6094 17 7 5.2161 -5.1805 2.3855 18 14 6.0636 -5.8117 4.9380 19 1 5.0639 -6.0465 6.0107 20 1 6.4721 -7.1125 4.3494 21 1 7.2531 -5.1314 5.5102 22 6 3.1563 -0.4146 -1.3814 23 1 2.7195 -1.3745 -1.6565 24 6 4.6808 -0.5393 -1.3456 25 6 5.2883 0.7734 -0.8469 26 6 2.7550 0.6426 -2.4121 27 6 3.1553 0.1687 -3.8108 28 6 2.7535 1.2255 -4.8417 29 6 3.1532 0.7514 -6.2404 30 1 -1.0499 -0.0010 -0.0007 31 1 2.3265 1.4264 1.8202 32 1 2.5096 2.2471 4.1285 33 1 3.5019 0.8294 5.8781 34 1 4.3193 -1.4207 5.3328 35 1 5.5370 -6.0692 2.1660 36 1 4.9634 -1.3491 -0.6730 37 1 5.0514 -0.7534 -2.3481 38 1 6.3699 0.6653 -0.7655 39 1 5.0550 1.5723 -1.5508 40 1 4.8729 1.0177 0.1308 41 1 1.6764 0.7952 -2.3750 42 1 3.2628 1.5805 -2.1872 43 1 4.2339 0.0161 -3.8479 44 1 2.6476 -0.7692 -4.0357 45 1 1.6749 1.3777 -4.8045 46 1 3.2608 2.1637 -4.6169 47 1 2.6456 -0.1866 -6.4650 48 1 2.8673 1.5045 -6.9748 49 1 4.2318 0.5989 -6.2778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:05 Heat of formation + Delta-G solvation = -39.859051 kcal Electronic energy + Delta-G solvation = -28349.182898 eV Core-core repulsion = 24627.734531 eV Total energy + Delta-G solvation = -3721.448368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42668 -39.51382 -38.10830 -37.57804 -35.23960 -34.68528 -34.00327 -32.17589 -31.01984 -30.78867 -29.17993 -28.51565 -26.08863 -24.58925 -24.45572 -23.02419 -21.99630 -21.56303 -20.47607 -19.57884 -18.96715 -18.39378 -17.36934 -16.87720 -16.85015 -16.57322 -16.10222 -15.62911 -15.32401 -15.22910 -14.96748 -14.92504 -14.52922 -14.28265 -14.07926 -13.89743 -13.57792 -13.47598 -13.32547 -13.24468 -13.14434 -12.74492 -12.67628 -12.49822 -12.30844 -12.24068 -12.13331 -12.09565 -11.94953 -11.87238 -11.76396 -11.60713 -11.53939 -11.29184 -11.24121 -10.94271 -10.89053 -9.74456 -9.43999 -9.01447 -8.25388 -6.98901 0.25695 0.59407 1.36647 1.40378 1.51002 1.51801 1.73752 2.22250 2.30637 2.63312 2.91052 3.26822 3.71666 3.72687 3.82897 3.86138 3.98627 4.02927 4.08240 4.18365 4.26256 4.30536 4.32969 4.46403 4.50878 4.54808 4.57747 4.63363 4.74096 4.78718 4.82284 4.90044 4.93987 4.96401 5.03799 5.11537 5.14464 5.16031 5.23295 5.24140 5.26807 5.35301 5.41405 5.43973 5.48108 5.53330 5.57684 5.69968 5.96989 6.06930 6.54455 6.62556 6.76235 6.91599 8.36309 8.58255 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.003596 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.802283 B = 7784.486663 C = 9195.107673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.251 4.251 3 C 0.187 3.813 4 H 0.102 0.898 5 O -0.288 6.288 6 C 0.132 3.868 7 C -0.225 4.225 8 C -0.072 4.072 9 C -0.166 4.166 10 C -0.064 4.064 11 C -0.192 4.192 12 C 0.368 3.632 13 O -0.569 6.569 14 C -0.552 4.552 15 H 0.091 0.909 16 C 0.024 3.976 17 N -0.791 5.791 18 Si 0.992 3.008 19 H -0.252 1.252 20 H -0.271 1.271 21 H -0.251 1.251 22 C -0.067 4.067 23 H 0.052 0.948 24 C -0.116 4.116 25 C -0.146 4.146 26 C -0.100 4.100 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.153 4.153 30 H 0.257 0.743 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.278 0.722 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 15.950 -6.443 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.252 4.252 3 C 0.131 3.869 4 H 0.120 0.880 5 O -0.200 6.200 6 C 0.086 3.914 7 C -0.243 4.243 8 C -0.090 4.090 9 C -0.184 4.184 10 C -0.082 4.082 11 C -0.193 4.193 12 C 0.266 3.734 13 O -0.460 6.460 14 C -0.583 4.583 15 H 0.109 0.891 16 C -0.194 4.194 17 N -0.421 5.421 18 Si 0.811 3.189 19 H -0.176 1.176 20 H -0.196 1.196 21 H -0.175 1.175 22 C -0.086 4.086 23 H 0.071 0.929 24 C -0.153 4.153 25 C -0.203 4.203 26 C -0.138 4.138 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.211 4.211 30 H 0.273 0.727 31 H 0.156 0.844 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.004 15.469 -7.240 17.798 hybrid contribution 0.079 -1.035 0.534 1.167 sum -4.926 14.435 -6.705 16.661 Atomic orbital electron populations 1.25822 0.96609 0.97901 0.97380 1.23891 0.95492 1.02794 1.02995 1.19553 0.83853 0.94113 0.89391 0.88026 1.86569 1.79143 1.39486 1.14829 1.19648 0.94385 0.93044 0.84326 1.21350 1.08174 0.95034 0.99774 1.21403 0.96050 1.00436 0.91066 1.21366 1.02117 0.93773 1.01145 1.21504 0.96335 0.96323 0.94056 1.21280 1.04978 0.98976 0.94095 1.18691 0.80270 0.85280 0.89203 1.90485 1.56605 1.74959 1.23996 1.21375 1.38309 1.00498 0.98076 0.89145 1.27215 0.94174 0.99695 0.98347 1.70132 1.33033 1.17154 1.21765 0.85155 0.79446 0.76636 0.77687 1.17614 1.19569 1.17455 1.21125 0.96258 1.00001 0.91176 0.92892 1.21442 0.94001 0.98400 1.01478 1.21804 1.00531 0.97245 1.00733 1.21560 1.01489 0.97462 0.93265 1.21638 1.01634 0.98910 0.93414 1.21494 1.01383 0.98446 0.94389 1.21782 1.01467 1.01289 0.96543 0.72728 0.84358 0.81968 0.82435 0.84770 0.91146 0.95354 0.89936 0.92769 0.89657 0.94427 0.91556 0.89908 0.91474 0.92941 0.91904 0.91196 0.93162 0.91852 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 19.25 74.32 1.43 -2.93 16 2 C -0.25 -8.37 10.82 31.12 0.34 -8.03 16 3 C 0.19 6.69 1.06 28.79 0.03 6.72 16 4 H 0.10 3.21 4.78 -2.39 -0.01 3.19 16 5 O -0.29 -13.93 7.06 -68.68 -0.48 -14.41 16 6 C 0.13 6.12 6.60 22.90 0.15 6.27 16 7 C -0.22 -7.93 8.68 22.34 0.19 -7.74 16 8 C -0.07 -2.09 10.04 22.34 0.22 -1.87 16 9 C -0.17 -5.19 10.02 22.25 0.22 -4.97 16 10 C -0.06 -2.64 9.43 22.53 0.21 -2.42 16 11 C -0.19 -9.83 5.90 -19.91 -0.12 -9.95 16 12 C 0.37 22.89 6.91 25.61 0.18 23.07 16 13 O -0.57 -39.80 13.71 16.18 0.22 -39.58 16 14 C -0.55 -32.30 8.86 23.67 0.21 -32.09 16 15 H 0.09 4.70 6.02 -2.91 -0.02 4.68 16 16 C 0.02 1.34 5.50 85.39 0.47 1.81 16 17 N -0.79 -48.98 11.73 21.89 0.26 -48.72 16 18 Si 0.99 41.03 29.56 68.60 2.03 43.06 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 C -0.07 -2.17 1.92 -10.79 -0.02 -2.19 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 C -0.12 -3.93 5.29 30.59 0.16 -3.77 16 25 C -0.15 -4.18 9.21 71.98 0.66 -3.52 16 26 C -0.10 -2.30 4.43 30.60 0.14 -2.17 16 27 C -0.12 -2.42 4.98 30.60 0.15 -2.27 16 28 C -0.12 -1.92 5.93 30.59 0.18 -1.74 16 29 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 30 H 0.26 4.34 7.80 -4.42 -0.03 4.31 16 31 H 0.14 4.19 5.67 -2.91 -0.02 4.18 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.13 5.31 6.20 -2.91 -0.02 5.30 16 35 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 36 H 0.03 1.28 7.71 -2.39 -0.02 1.26 16 37 H 0.08 2.41 6.36 -2.38 -0.02 2.39 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.82 6.61 -2.39 -0.02 1.81 16 40 H 0.04 1.18 6.28 -2.39 -0.01 1.16 16 41 H 0.07 1.49 7.24 -2.39 -0.02 1.47 16 42 H 0.08 1.63 6.40 -2.39 -0.02 1.61 16 43 H 0.07 1.38 6.47 -2.39 -0.02 1.36 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -82.58 395.21 8.49 -74.09 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.94 Total: 34.91 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 5.53 Total: -49.33 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.26 Total: -48.72 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.26 Total: -54.00 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -82.58 8.49 -74.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.228 kcal (2) G-P(sol) polarization free energy of solvation -82.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds