Wall clock time and date at job start Tue Mar 31 2020 14:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09011 * 109.47106 * 101.93105 * 3 2 1 5 5 O 1.42906 * 109.47483 * 221.92735 * 3 2 1 6 6 C 1.35630 * 117.00401 * 267.66982 * 5 3 2 7 7 C 1.38675 * 120.16060 * 5.83177 * 6 5 3 8 8 C 1.38088 * 120.08939 * 179.74932 * 7 6 5 9 9 C 1.38684 * 120.41879 * 0.55779 * 8 7 6 10 10 C 1.37699 * 120.32231 * 359.70094 * 9 8 7 11 11 C 1.39853 * 119.89891 * 0.02562 * 10 9 8 12 12 C 1.47533 * 120.20415 * 180.02562 * 11 10 9 13 13 O 1.21808 * 120.00104 * 179.97438 * 12 11 10 14 14 C 1.41830 * 119.99890 * 359.97438 * 12 11 10 15 15 H 1.07997 * 120.00118 * 359.97438 * 14 12 11 16 16 C 1.40330 * 119.99906 * 179.97438 * 14 12 11 17 17 N 1.30538 * 119.99515 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99911 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47046 * 60.00144 * 18 16 14 20 20 H 1.48503 * 109.46852 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47413 * 299.99937 * 18 16 14 22 22 C 1.53002 * 109.47411 * 341.93283 * 3 2 1 23 23 H 1.08996 * 109.46956 * 65.33440 * 22 3 2 24 24 C 1.52994 * 109.47171 * 185.33840 * 22 3 2 25 25 C 1.53004 * 109.47198 * 184.73765 * 24 22 3 26 26 C 1.53000 * 109.46739 * 305.33871 * 22 3 2 27 27 C 1.53003 * 109.47109 * 294.48602 * 26 22 3 28 28 C 1.53001 * 109.47177 * 185.35119 * 27 26 22 29 29 C 1.53003 * 109.47177 * 179.97438 * 28 27 26 30 30 H 4.18745 * 15.03982 * 0.02562 * 4 2 1 31 31 H 1.08004 * 119.95199 * 0.02904 * 7 6 5 32 32 H 1.07996 * 119.78798 * 180.26159 * 8 7 6 33 33 H 1.08003 * 119.83947 * 179.72177 * 9 8 7 34 34 H 1.08003 * 120.05344 * 179.97438 * 10 9 8 35 35 H 0.97006 * 119.99119 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47462 * 304.73752 * 24 22 3 37 37 H 1.09004 * 109.47235 * 64.74061 * 24 22 3 38 38 H 1.08998 * 109.47554 * 184.83078 * 25 24 22 39 39 H 1.09001 * 109.46711 * 304.83328 * 25 24 22 40 40 H 1.08996 * 109.47046 * 64.83108 * 25 24 22 41 41 H 1.08997 * 109.47580 * 54.48541 * 26 22 3 42 42 H 1.09005 * 109.47083 * 174.48657 * 26 22 3 43 43 H 1.09002 * 109.47044 * 305.34573 * 27 26 22 44 44 H 1.08999 * 109.47058 * 65.34768 * 27 26 22 45 45 H 1.09003 * 109.47160 * 299.99912 * 28 27 26 46 46 H 1.08999 * 109.47412 * 59.99866 * 28 27 26 47 47 H 1.08999 * 109.47058 * 59.99649 * 29 28 27 48 48 H 1.08994 * 109.46963 * 180.02562 * 29 28 27 49 49 H 1.09003 * 109.47003 * 300.00008 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0092 0.2133 -1.0056 5 8 3.1219 1.0033 0.9002 6 6 3.3730 2.2299 0.3789 7 6 3.0538 2.5041 -0.9425 8 6 3.3053 3.7551 -1.4702 9 6 3.8882 4.7422 -0.6898 10 6 4.2169 4.4870 0.6228 11 6 3.9629 3.2265 1.1727 12 6 4.3119 2.9459 2.5784 13 8 4.0886 1.8468 3.0537 14 6 4.9074 3.9559 3.3764 15 1 5.1058 4.9302 2.9549 16 6 5.2389 3.6892 4.7137 17 7 4.9995 2.5113 5.2229 18 14 6.0239 5.0192 5.7645 19 1 5.1112 6.1876 5.8473 20 1 6.2735 4.4890 7.1290 21 1 7.3105 5.4384 5.1528 22 6 3.1566 -1.3705 0.4474 23 1 2.8737 -2.1218 -0.2899 24 6 4.6806 -1.3301 0.5756 25 6 5.2018 -2.7298 0.9076 26 6 2.5401 -1.7273 1.8014 27 6 3.0472 -0.7519 2.8656 28 6 2.5378 -1.1875 4.2410 29 6 3.0454 -0.2125 5.3052 30 1 -1.0501 0.0004 0.0004 31 1 2.6037 1.7394 -1.5583 32 1 3.0509 3.9645 -2.4987 33 1 4.0848 5.7160 -1.1134 34 1 4.6710 5.2589 1.2266 35 1 5.2283 2.3271 6.1474 36 1 5.1157 -0.9943 -0.3657 37 1 4.9601 -0.6400 1.3717 38 1 6.2766 -2.6852 1.0834 39 1 4.7023 -3.1005 1.8027 40 1 4.9977 -3.4009 0.0733 41 1 1.4542 -1.6604 1.7353 42 1 2.8256 -2.7433 2.0743 43 1 4.1372 -0.7491 2.8661 44 1 2.6814 0.2506 2.6434 45 1 1.4477 -1.1903 4.2405 46 1 2.9036 -2.1900 4.4631 47 1 2.6799 0.7902 5.0832 48 1 2.6828 -0.5231 6.2850 49 1 4.1354 -0.2101 5.3055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:08 Heat of formation + Delta-G solvation = -25.684098 kcal Electronic energy + Delta-G solvation = -29822.545627 eV Core-core repulsion = 26101.711931 eV Total energy + Delta-G solvation = -3720.833696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36834 -39.40588 -37.91531 -37.21318 -34.90855 -34.49389 -33.98537 -32.06418 -31.11008 -30.40048 -29.21002 -28.41618 -25.65918 -24.43035 -24.33747 -23.08725 -22.02278 -21.41311 -20.14734 -19.51986 -18.75975 -18.16061 -17.21528 -16.95448 -16.41568 -16.22756 -16.13965 -15.82977 -15.20809 -15.14188 -14.88810 -14.56063 -14.39009 -14.27563 -13.84071 -13.54442 -13.44734 -13.25480 -13.20426 -13.13556 -12.84555 -12.70760 -12.60189 -12.50816 -12.21519 -12.14071 -12.05749 -12.01534 -11.85604 -11.65245 -11.57507 -11.42823 -11.24177 -11.09594 -10.86838 -10.79211 -10.61253 -9.65216 -9.17968 -8.90057 -8.06828 -6.77596 0.34947 0.66239 1.40799 1.42030 1.51286 1.59298 1.83090 2.28221 2.43806 2.76769 2.99934 3.33679 3.77897 3.84510 3.99105 4.03243 4.07946 4.09713 4.25781 4.34432 4.37159 4.40375 4.55387 4.59499 4.64175 4.70226 4.74884 4.78587 4.83106 4.92004 4.93651 5.00600 5.03288 5.11766 5.18746 5.24412 5.24809 5.32999 5.35720 5.44064 5.47573 5.48822 5.56880 5.60175 5.77429 5.80603 5.83807 6.06299 6.15342 6.28265 6.63015 6.73583 6.94365 7.05676 8.51649 8.75376 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.005901 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.293334 B = 4743.569322 C = 6546.780883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.236 4.236 3 C 0.179 3.821 4 H 0.099 0.901 5 O -0.260 6.260 6 C 0.128 3.872 7 C -0.228 4.228 8 C -0.077 4.077 9 C -0.171 4.171 10 C -0.070 4.070 11 C -0.183 4.183 12 C 0.366 3.634 13 O -0.522 6.522 14 C -0.555 4.555 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.763 5.763 18 Si 0.972 3.028 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.067 4.067 23 H 0.109 0.891 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.105 4.105 27 C -0.101 4.101 28 C -0.111 4.111 29 C -0.114 4.114 30 H 0.251 0.749 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.272 0.728 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.042 0.958 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -5.467 -11.286 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.236 4.236 3 C 0.123 3.877 4 H 0.116 0.884 5 O -0.173 6.173 6 C 0.081 3.919 7 C -0.246 4.246 8 C -0.095 4.095 9 C -0.189 4.189 10 C -0.088 4.088 11 C -0.184 4.184 12 C 0.261 3.739 13 O -0.410 6.410 14 C -0.587 4.587 15 H 0.093 0.907 16 C -0.183 4.183 17 N -0.392 5.392 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.085 4.085 23 H 0.127 0.873 24 C -0.159 4.159 25 C -0.200 4.200 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.149 4.149 29 C -0.172 4.172 30 H 0.267 0.733 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.582 -6.240 -10.741 13.240 hybrid contribution 0.274 1.020 0.665 1.248 sum -4.307 -5.220 -10.076 12.138 Atomic orbital electron populations 1.25742 0.96640 0.97741 0.98648 1.23690 0.95245 1.02610 1.02060 1.19588 0.84016 0.89544 0.94596 0.88385 1.86790 1.78456 1.17059 1.34958 1.19725 0.93765 0.86075 0.92315 1.21355 1.08892 1.00249 0.94132 1.21330 0.96019 0.91588 1.00577 1.21299 1.03015 1.00989 0.93593 1.21483 0.96621 0.94944 0.95741 1.21347 1.03895 0.94091 0.99111 1.18522 0.80952 0.89335 0.85118 1.90504 1.52117 1.24743 1.73684 1.21211 1.39685 1.00594 0.97166 0.90708 1.26779 0.94459 0.97770 0.99322 1.70094 1.33171 1.22065 1.13829 0.85442 0.79348 0.78743 0.77118 1.18626 1.19873 1.18472 1.21315 0.95724 0.92711 0.98733 0.87279 1.21534 0.94190 0.98698 1.01442 1.21729 1.00513 0.95680 1.02066 1.21623 0.99296 0.99298 0.94047 1.21607 0.99703 0.99864 0.92637 1.21458 0.99200 0.98148 0.96062 1.21342 1.00271 0.98591 0.96952 0.73270 0.84275 0.82614 0.83264 0.85414 0.91769 0.92188 0.93358 0.93138 0.92687 0.90884 0.92739 0.90980 0.94176 0.90756 0.93328 0.92276 0.95233 0.93931 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 19.25 74.32 1.43 -3.00 16 2 C -0.24 -7.29 11.02 31.12 0.34 -6.94 16 3 C 0.18 5.80 1.87 28.79 0.05 5.86 16 4 H 0.10 2.82 5.86 -2.38 -0.01 2.81 16 5 O -0.26 -11.07 4.05 -68.55 -0.28 -11.35 16 6 C 0.13 5.47 6.68 22.90 0.15 5.63 16 7 C -0.23 -7.68 8.87 22.34 0.20 -7.48 16 8 C -0.08 -2.24 10.03 22.34 0.22 -2.02 16 9 C -0.17 -5.38 10.02 22.25 0.22 -5.16 16 10 C -0.07 -2.82 9.43 22.53 0.21 -2.61 16 11 C -0.18 -8.81 5.90 -19.91 -0.12 -8.93 16 12 C 0.37 20.86 6.91 25.61 0.18 21.04 16 13 O -0.52 -31.19 10.85 16.18 0.18 -31.02 16 14 C -0.56 -30.94 8.86 23.67 0.21 -30.73 16 15 H 0.07 3.85 6.02 -2.91 -0.02 3.84 16 16 C 0.04 1.96 5.50 85.39 0.47 2.43 16 17 N -0.76 -43.09 11.73 21.89 0.26 -42.83 16 18 Si 0.97 40.46 29.56 68.60 2.03 42.48 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.07 -1.93 2.24 -10.79 -0.02 -1.95 16 23 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 24 C -0.12 -3.74 4.79 30.59 0.15 -3.59 16 25 C -0.14 -3.58 9.77 71.98 0.70 -2.88 16 26 C -0.11 -3.32 4.39 30.60 0.13 -3.19 16 27 C -0.10 -4.15 3.01 30.60 0.09 -4.06 16 28 C -0.11 -4.28 5.93 30.60 0.18 -4.10 16 29 C -0.11 -5.06 9.91 71.98 0.71 -4.35 16 30 H 0.25 4.17 7.80 -4.41 -0.03 4.14 16 31 H 0.14 3.97 5.81 -2.91 -0.02 3.96 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 34 H 0.13 5.10 6.20 -2.91 -0.02 5.09 16 35 H 0.27 14.22 8.29 -92.70 -0.77 13.45 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.97 5.53 -2.39 -0.01 1.96 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.41 6.46 -2.39 -0.02 1.40 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.70 6.87 -2.39 -0.02 1.69 16 42 H 0.07 1.99 6.73 -2.38 -0.02 1.97 16 43 H 0.04 1.86 5.79 -2.39 -0.01 1.85 16 44 H 0.07 3.67 4.15 -2.39 -0.01 3.66 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.03 1.51 8.00 -2.39 -0.02 1.49 16 48 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -69.44 386.66 8.65 -60.79 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: 0.95 Total: 37.96 kcal Atomic # 6 Polarization: -61.55 SS G_CDS: 5.52 Total: -56.03 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.26 Total: -42.83 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.10 Total: -42.36 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -69.44 8.65 -60.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.102 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds