Wall clock time and date at job start Tue Mar 31 2020 14:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09006 * 109.47078 * 130.36709 * 3 2 1 5 5 O 1.42903 * 109.47572 * 10.37311 * 3 2 1 6 6 C 1.35662 * 116.99753 * 84.77257 * 5 3 2 7 7 C 1.39166 * 119.90210 * 174.39213 * 6 5 3 8 8 C 1.37600 * 120.09479 * 179.76614 * 7 6 5 9 9 C 1.39945 * 119.89921 * 0.50975 * 8 7 6 10 10 C 1.47579 * 120.09039 * 179.72187 * 9 8 7 11 11 O 1.21824 * 119.99965 * 180.02562 * 10 9 8 12 12 C 1.41754 * 120.00116 * 0.02562 * 10 9 8 13 13 H 1.08003 * 120.00025 * 359.97438 * 12 10 9 14 14 C 1.40335 * 120.00236 * 180.02562 * 12 10 9 15 15 N 1.30528 * 120.00011 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00084 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47430 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47030 * 120.00119 * 16 14 12 19 19 H 1.48503 * 109.47218 * 239.99875 * 16 14 12 20 20 C 1.39951 * 119.81897 * 359.74558 * 9 8 7 21 21 C 1.37597 * 119.89993 * 359.97438 * 20 9 8 22 22 C 1.52996 * 109.47423 * 250.37239 * 3 2 1 23 23 H 1.08999 * 109.47019 * 59.99701 * 22 3 2 24 24 C 1.52995 * 109.47402 * 180.02562 * 22 3 2 25 25 C 1.53004 * 109.46895 * 183.71244 * 24 22 3 26 26 C 1.53006 * 109.46730 * 300.00531 * 22 3 2 27 27 C 1.53001 * 109.46905 * 300.00502 * 26 22 3 28 28 C 1.52997 * 109.47113 * 177.95979 * 27 26 22 29 29 C 1.53003 * 109.47309 * 180.02562 * 28 27 26 30 30 H 4.18745 * 15.03868 * 0.02562 * 4 2 1 31 31 H 1.07997 * 119.95325 * 0.02562 * 7 6 5 32 32 H 1.07996 * 120.04705 * 180.25425 * 8 7 6 33 33 H 0.97004 * 120.00198 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.05051 * 179.97438 * 20 9 8 35 35 H 1.08001 * 119.94732 * 179.97438 * 21 20 9 36 36 H 1.09000 * 109.47185 * 303.71693 * 24 22 3 37 37 H 1.09005 * 109.47044 * 63.71980 * 24 22 3 38 38 H 1.08995 * 109.47570 * 294.28589 * 25 24 22 39 39 H 1.08996 * 109.47187 * 54.29399 * 25 24 22 40 40 H 1.09005 * 109.46806 * 174.28649 * 25 24 22 41 41 H 1.09002 * 109.46759 * 180.02562 * 26 22 3 42 42 H 1.08991 * 109.47441 * 60.00785 * 26 22 3 43 43 H 1.09006 * 109.46916 * 57.96164 * 27 26 22 44 44 H 1.08998 * 109.47878 * 297.96492 * 27 26 22 45 45 H 1.09005 * 109.47476 * 300.00359 * 28 27 26 46 46 H 1.08997 * 109.47165 * 60.00449 * 28 27 26 47 47 H 1.09000 * 109.46867 * 299.99871 * 29 28 27 48 48 H 1.08997 * 109.47173 * 59.99801 * 29 28 27 49 49 H 1.08996 * 109.47112 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6665 -0.7830 5 8 3.1230 -1.3244 -0.2426 6 6 3.2247 -1.7148 -1.5378 7 6 3.7913 -2.9474 -1.8484 8 6 3.8920 -3.3494 -3.1605 9 6 3.4334 -2.5122 -4.1839 10 6 3.5449 -2.9366 -5.5929 11 8 3.1456 -2.2063 -6.4824 12 6 4.1168 -4.1940 -5.9113 13 1 4.4712 -4.8413 -5.1227 14 6 4.2234 -4.5973 -7.2512 15 7 3.7964 -3.8144 -8.2044 16 14 4.9776 -6.2540 -7.6708 17 1 5.3817 -6.9450 -6.4201 18 1 3.9805 -7.0827 -8.3949 19 1 6.1709 -6.0510 -8.5312 20 6 2.8691 -1.2712 -3.8674 21 6 2.7670 -0.8795 -2.5523 22 6 3.1558 0.4854 1.3586 23 1 2.7928 -0.1804 2.1416 24 6 4.6858 0.4867 1.3584 25 6 5.1956 0.8825 2.7456 26 6 2.6451 1.9041 1.6183 27 6 3.1544 2.8387 0.5192 28 6 2.6022 4.2466 0.7506 29 6 3.1110 5.1811 -0.3489 30 1 -1.0500 -0.0001 0.0009 31 1 4.1487 -3.5910 -1.0583 32 1 4.3282 -4.3078 -3.4005 33 1 3.8704 -4.0930 -9.1306 34 1 2.5143 -0.6220 -4.6542 35 1 2.3320 0.0782 -2.3072 36 1 5.0499 -0.5097 1.1080 37 1 5.0484 1.2022 0.6203 38 1 4.9174 1.9155 2.9539 39 1 4.7519 0.2283 3.4961 40 1 6.2809 0.7855 2.7751 41 1 3.0087 2.2497 2.5861 42 1 1.5552 1.9036 1.6185 43 1 2.8213 2.4728 -0.4520 44 1 4.2438 2.8673 0.5424 45 1 1.5128 4.2181 0.7272 46 1 2.9353 4.6125 1.7217 47 1 4.2004 5.2098 -0.3259 48 1 2.7776 4.8151 -1.3199 49 1 2.7180 6.1843 -0.1838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:27 Heat of formation + Delta-G solvation = -29.578280 kcal Electronic energy + Delta-G solvation = -27375.090217 eV Core-core repulsion = 23654.087657 eV Total energy + Delta-G solvation = -3721.002560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.23684 -38.37320 -37.12453 -35.65561 -34.32353 -33.19714 -32.68700 -30.52801 -30.41502 -29.69824 -28.09321 -26.58095 -25.18013 -23.73494 -22.62386 -21.96638 -21.65874 -19.68846 -19.55013 -18.49151 -17.88204 -16.72103 -16.15342 -15.72490 -15.53698 -15.39222 -14.94864 -14.51884 -14.13152 -14.05610 -13.91045 -13.32584 -13.24020 -13.17763 -12.93077 -12.83462 -12.53967 -12.47340 -12.27805 -12.05529 -11.76227 -11.74710 -11.63190 -11.27596 -11.20217 -11.15648 -11.13057 -10.83519 -10.79038 -10.70429 -10.48415 -10.44817 -10.43261 -10.33930 -10.08567 -9.87534 -8.98809 -8.41520 -7.48833 -7.48202 -6.30915 -4.90891 1.84808 2.01158 2.47453 2.69700 3.03582 3.12888 3.17361 3.58771 3.99160 4.00329 4.13036 4.45995 4.55359 4.65198 4.67993 4.78624 4.87069 4.96492 5.02897 5.17898 5.26295 5.34947 5.35327 5.40358 5.46200 5.50622 5.53041 5.61790 5.70244 5.72290 5.75166 5.81580 5.85493 5.89598 5.90045 5.95083 6.03899 6.05853 6.08937 6.12144 6.14324 6.26103 6.33413 6.64461 6.85836 7.04749 7.24374 7.33583 7.38600 7.48120 7.82339 8.03778 8.78901 8.84175 10.30812 10.53005 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.002519 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.568347 B =11113.615264 C =11639.621961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.208 4.208 3 C 0.199 3.801 4 H 0.096 0.904 5 O -0.302 6.302 6 C 0.109 3.891 7 C -0.162 4.162 8 C -0.058 4.058 9 C -0.134 4.134 10 C 0.389 3.611 11 O -0.544 6.544 12 C -0.517 4.517 13 H 0.075 0.925 14 C 0.079 3.921 15 N -0.735 5.735 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.056 4.056 21 C -0.215 4.215 22 C -0.074 4.074 23 H 0.082 0.918 24 C -0.124 4.124 25 C -0.150 4.150 26 C -0.113 4.113 27 C -0.129 4.129 28 C -0.123 4.123 29 C -0.155 4.155 30 H 0.218 0.782 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.273 0.727 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 10.923 20.390 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.208 4.208 3 C 0.143 3.857 4 H 0.114 0.886 5 O -0.216 6.216 6 C 0.065 3.935 7 C -0.180 4.180 8 C -0.076 4.076 9 C -0.136 4.136 10 C 0.285 3.715 11 O -0.434 6.434 12 C -0.548 4.548 13 H 0.093 0.907 14 C -0.144 4.144 15 N -0.364 5.364 16 Si 0.730 3.270 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.074 4.074 21 C -0.234 4.234 22 C -0.093 4.093 23 H 0.101 0.899 24 C -0.161 4.161 25 C -0.207 4.207 26 C -0.151 4.151 27 C -0.166 4.166 28 C -0.160 4.160 29 C -0.212 4.212 30 H 0.235 0.765 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.850 11.241 19.984 22.944 hybrid contribution -0.057 -0.736 -0.261 0.783 sum -0.907 10.505 19.722 22.364 Atomic orbital electron populations 1.24966 0.95884 0.98390 1.00235 1.23479 0.94798 1.01677 1.00836 1.19282 0.83307 0.84081 0.99059 0.88646 1.86067 1.80608 1.30883 1.24061 1.19121 0.97675 0.94712 0.82017 1.20338 1.05460 0.95147 0.97103 1.21394 0.96155 0.99484 0.90551 1.21824 0.98490 0.93946 0.99326 1.18081 0.81198 0.88019 0.84220 1.90501 1.48785 1.55866 1.48262 1.20967 1.37513 1.03626 0.92669 0.90703 1.26013 0.93788 0.98258 0.96343 1.69971 1.31187 1.34659 1.00596 0.86330 0.79282 0.81948 0.79471 1.18317 1.19842 1.19837 1.21175 0.95436 0.96036 0.94796 1.21067 1.08091 1.00695 0.93504 1.21206 0.96391 0.97010 0.94671 0.89913 1.21608 0.93660 1.02911 0.97927 1.21785 1.00872 1.01280 0.96803 1.21625 1.00982 0.93045 0.99414 1.21799 1.01180 0.94622 0.99037 1.21508 1.00597 0.95004 0.98906 1.21788 1.01211 0.99141 0.99061 0.76482 0.85965 0.84574 0.91559 0.85553 0.86541 0.90737 0.91419 0.92652 0.92745 0.92679 0.90835 0.91568 0.91843 0.91250 0.92184 0.92185 0.92717 0.92592 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.21 -2.72 10.65 -37.12 -0.40 -3.11 16 3 C 0.20 2.52 1.36 -29.52 -0.04 2.48 16 4 H 0.10 1.21 4.55 -51.93 -0.24 0.97 16 5 O -0.30 -4.68 9.02 -18.69 -0.17 -4.85 16 6 C 0.11 1.93 6.60 -38.90 -0.26 1.67 16 7 C -0.16 -2.91 9.97 -39.47 -0.39 -3.31 16 8 C -0.06 -1.18 9.43 -39.18 -0.37 -1.55 16 9 C -0.13 -3.21 5.89 -104.81 -0.62 -3.82 16 10 C 0.39 11.09 6.91 -34.43 -0.24 10.86 16 11 O -0.54 -17.44 14.89 5.08 0.08 -17.36 16 12 C -0.52 -14.19 8.85 -37.45 -0.33 -14.53 16 13 H 0.07 1.86 6.01 -52.48 -0.32 1.54 16 14 C 0.08 2.13 5.50 -17.32 -0.10 2.03 16 15 N -0.74 -21.22 11.73 55.57 0.65 -20.57 16 16 Si 0.91 19.23 29.56 -169.99 -5.03 14.20 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 C -0.06 -1.22 9.59 -39.17 -0.38 -1.59 16 21 C -0.21 -3.95 8.67 -39.47 -0.34 -4.29 16 22 C -0.07 -0.73 1.95 -90.62 -0.18 -0.91 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.12 -1.16 5.07 -26.73 -0.14 -1.29 16 25 C -0.15 -1.13 9.49 37.16 0.35 -0.78 16 26 C -0.11 -0.93 4.47 -26.73 -0.12 -1.05 16 27 C -0.13 -1.07 4.51 -26.73 -0.12 -1.19 16 28 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 29 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 30 H 0.22 1.75 7.80 -54.09 -0.42 1.33 16 31 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.14 2.64 6.19 -52.49 -0.33 2.32 16 33 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 34 H 0.13 2.81 7.65 -52.49 -0.40 2.41 16 35 H 0.12 1.89 5.65 -52.49 -0.30 1.59 16 36 H 0.07 0.81 7.57 -51.93 -0.39 0.41 16 37 H 0.07 0.62 6.28 -51.93 -0.33 0.30 16 38 H 0.05 0.37 6.82 -51.93 -0.35 0.02 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.52 6.65 -51.93 -0.35 0.17 16 42 H 0.07 0.58 7.23 -51.93 -0.38 0.20 16 43 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 44 H 0.07 0.56 6.46 -51.93 -0.34 0.22 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -32.82 397.20 -8.75 -41.57 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.39 Total: 4.78 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -2.88 Total: -23.76 kcal Atomic # 7 Polarization: -21.22 SS G_CDS: 0.65 Total: -20.57 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.09 Total: -22.21 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.82 -8.75 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.995 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds