Wall clock time and date at job start Tue Mar 31 2020 15:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31001 * 119.99859 * 2 1 4 4 C 1.50698 * 119.99853 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47037 * 119.99707 * 4 3 2 6 6 O 1.42899 * 109.47229 * 359.97438 * 4 3 2 7 7 C 1.35665 * 117.00029 * 86.62854 * 6 4 3 8 8 C 1.39157 * 119.90508 * 173.93450 * 7 6 4 9 9 C 1.37599 * 120.09050 * 179.76167 * 8 7 6 10 10 C 1.39942 * 119.90534 * 0.51058 * 9 8 7 11 11 C 1.47572 * 120.09318 * 179.71965 * 10 9 8 12 12 O 1.21820 * 120.00209 * 180.02562 * 11 10 9 13 13 C 1.41761 * 119.99820 * 0.02562 * 11 10 9 14 14 H 1.07999 * 120.00166 * 0.02562 * 13 11 10 15 15 C 1.40349 * 119.99960 * 179.97438 * 13 11 10 16 16 N 1.30528 * 119.99710 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00050 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47300 * 90.00196 * 17 15 13 19 19 H 1.48504 * 109.46986 * 210.00506 * 17 15 13 20 20 H 1.48506 * 109.47211 * 329.99991 * 17 15 13 21 21 C 1.39944 * 119.81350 * 359.74217 * 10 9 8 22 22 C 1.37588 * 119.90770 * 0.02562 * 21 10 9 23 23 C 1.52998 * 109.47208 * 239.99509 * 4 3 2 24 24 C 1.53001 * 109.47342 * 185.00229 * 23 4 3 25 25 C 1.52994 * 109.47457 * 180.02562 * 24 23 4 26 26 C 1.53006 * 109.47250 * 59.99421 * 25 24 23 27 27 C 1.53001 * 109.47363 * 300.00637 * 26 25 24 28 28 C 1.52998 * 109.46781 * 65.00399 * 23 4 3 29 29 H 1.09007 * 109.47301 * 60.00653 * 1 2 3 30 30 H 1.09006 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47589 * 300.00431 * 1 2 3 32 32 H 1.07996 * 120.00171 * 179.97438 * 2 1 3 33 33 H 1.07996 * 119.99969 * 359.97438 * 3 2 1 34 34 H 1.07994 * 119.95288 * 0.02562 * 8 7 6 35 35 H 1.08007 * 120.04378 * 180.25274 * 9 8 7 36 36 H 0.97000 * 119.99882 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.04825 * 179.97438 * 21 10 9 38 38 H 1.07998 * 119.95778 * 179.97438 * 22 21 10 39 39 H 1.09004 * 109.47371 * 305.00647 * 23 4 3 40 40 H 1.08999 * 109.47025 * 59.99983 * 24 23 4 41 41 H 1.09002 * 109.46713 * 300.00472 * 24 23 4 42 42 H 1.08992 * 109.47524 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.47036 * 300.00284 * 25 24 23 44 44 H 1.09004 * 109.46397 * 60.00471 * 26 25 24 45 45 H 1.08998 * 109.47253 * 180.02562 * 26 25 24 46 46 H 1.08993 * 109.46812 * 299.99360 * 27 26 25 47 47 H 1.08999 * 109.47025 * 179.97438 * 27 26 25 48 48 H 1.09003 * 109.47240 * 299.99352 * 28 23 4 49 49 H 1.08993 * 109.47642 * 59.99940 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 3.6689 1.1345 0.0006 5 1 4.0326 1.6481 -0.8895 6 8 4.1453 -0.2127 0.0017 7 6 4.2840 -0.8179 -1.2046 8 6 4.8612 -2.0816 -1.2844 9 6 4.9994 -2.7010 -2.5053 10 6 4.5682 -2.0539 -3.6688 11 6 4.7200 -2.7117 -4.9810 12 8 4.3446 -2.1467 -5.9928 13 6 5.3028 -4.0013 -5.0641 14 1 5.6353 -4.5025 -4.1671 15 6 5.4467 -4.6273 -6.3120 16 7 5.0444 -4.0217 -7.3961 17 14 6.2140 -6.3269 -6.4215 18 1 5.1517 -7.3580 -6.3052 19 1 6.9062 -6.4743 -7.7270 20 1 7.1941 -6.4995 -5.3193 21 6 3.9931 -0.7808 -3.5844 22 6 3.8544 -0.1706 -2.3591 23 6 4.1785 1.8561 1.2498 24 6 5.7033 1.9660 1.1891 25 6 6.2129 2.6870 2.4385 26 6 5.8076 1.8967 3.6844 27 6 4.2828 1.7869 3.7451 28 6 3.7733 1.0663 2.4959 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.0470 -0.9353 0.0004 33 1 1.6219 2.0698 -0.0004 34 1 5.1973 -2.5786 -0.3865 35 1 5.4438 -3.6836 -2.5660 36 1 5.1442 -4.4542 -8.2586 37 1 3.6594 -0.2777 -4.4800 38 1 3.4110 0.8120 -2.2931 39 1 3.7438 2.8547 1.2953 40 1 5.9920 2.5287 0.3013 41 1 6.1379 0.9674 1.1435 42 1 7.2992 2.7649 2.3955 43 1 5.7782 3.6856 2.4845 44 1 6.2423 0.8982 3.6385 45 1 6.1703 2.4107 4.5746 46 1 3.8482 2.7854 3.7911 47 1 3.9942 1.2235 4.6325 48 1 2.6869 0.9881 2.5392 49 1 4.2079 0.0678 2.4504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525035.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:10 Heat of formation + Delta-G solvation = -67.851069 kcal Electronic energy + Delta-G solvation = -27877.494478 eV Core-core repulsion = 24154.832285 eV Total energy + Delta-G solvation = -3722.662193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.39485 -38.59031 -37.37033 -35.79370 -34.59217 -32.68791 -32.09776 -30.89300 -30.49418 -29.35380 -28.13729 -26.59473 -24.79460 -22.79315 -22.61129 -22.23684 -21.04492 -19.91856 -19.49734 -19.24578 -17.57566 -16.62989 -16.09784 -15.84159 -15.51639 -14.98899 -14.40943 -14.38132 -14.19948 -14.13676 -13.69691 -13.50535 -13.34601 -13.12317 -13.06145 -12.80186 -12.66260 -12.42290 -12.32335 -12.21874 -11.82546 -11.69092 -11.44209 -11.31382 -11.26268 -11.24331 -11.14105 -11.02542 -10.64288 -10.60206 -10.42155 -10.34963 -10.22561 -10.04153 -9.88967 -8.98693 -8.96072 -8.37238 -7.47117 -7.42283 -6.29836 -4.89926 1.88851 2.04489 2.17563 3.05251 3.12916 3.16267 3.44074 4.00840 4.05621 4.43483 4.49804 4.59142 4.66715 4.79479 4.99410 5.07139 5.10709 5.20043 5.22180 5.34586 5.35190 5.38220 5.44439 5.48166 5.49428 5.53729 5.58167 5.70819 5.77654 5.83045 5.85365 5.86661 5.92933 5.98745 6.00854 6.06798 6.09622 6.13504 6.16827 6.19554 6.31484 6.42243 6.65470 6.67682 6.79956 6.90505 7.07944 7.25563 7.39640 7.42993 7.90102 8.04297 8.79718 8.85495 10.31947 10.54257 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.002685 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.821125 B =10427.651927 C =11134.636767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C -0.201 4.201 4 C 0.122 3.878 5 H 0.079 0.921 6 O -0.305 6.305 7 C 0.113 3.887 8 C -0.166 4.166 9 C -0.058 4.058 10 C -0.137 4.137 11 C 0.389 3.611 12 O -0.545 6.545 13 C -0.518 4.518 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.736 5.736 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.057 4.057 22 C -0.214 4.214 23 C -0.072 4.072 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 10.688 20.208 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C -0.220 4.220 4 C 0.065 3.935 5 H 0.097 0.903 6 O -0.219 6.219 7 C 0.068 3.932 8 C -0.185 4.185 9 C -0.076 4.076 10 C -0.138 4.138 11 C 0.285 3.715 12 O -0.435 6.435 13 C -0.549 4.549 14 H 0.092 0.908 15 C -0.144 4.144 16 N -0.365 5.365 17 Si 0.730 3.270 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.075 4.075 22 C -0.233 4.233 23 C -0.090 4.090 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.156 4.156 28 C -0.147 4.147 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.152 0.848 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.527 10.931 19.746 22.710 hybrid contribution 0.254 -0.670 -0.151 0.732 sum -2.274 10.261 19.595 22.235 Atomic orbital electron populations 1.20868 0.93264 1.02461 1.01662 1.22908 0.95889 0.99003 0.97272 1.23108 0.95371 0.98674 1.04812 1.21307 0.91212 0.82029 0.98937 0.90306 1.85995 1.81209 1.27139 1.27541 1.19087 0.97183 0.93122 0.83787 1.20323 1.05609 0.94095 0.98472 1.21374 0.96235 0.99436 0.90600 1.21785 0.98780 0.94843 0.98390 1.18075 0.81091 0.87416 0.84882 1.90498 1.49672 1.66719 1.36587 1.20938 1.37657 1.02629 0.93645 0.90790 1.26012 0.93863 0.99111 0.95388 1.69962 1.31526 1.36135 0.98855 0.86386 0.79881 0.82133 0.78643 1.19389 1.20173 1.18468 1.21173 0.95339 0.94510 0.96480 1.21095 1.08180 1.01294 0.92736 1.21212 0.96034 0.98432 0.93347 1.21597 0.94679 1.01628 0.97574 1.21512 1.00406 0.98860 0.94702 1.21544 0.96074 1.00608 0.97543 1.21537 0.95682 1.00438 0.97991 1.21475 1.00671 0.99621 0.92889 0.91652 0.92007 0.91893 0.86491 0.86682 0.86197 0.84777 0.91524 0.85725 0.86355 0.89975 0.92105 0.90954 0.92086 0.92258 0.91888 0.92434 0.92361 0.92238 0.91917 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 10.17 36.00 0.37 -0.90 16 2 C -0.13 -1.61 9.18 -36.03 -0.33 -1.94 16 3 C -0.20 -2.25 7.42 -36.03 -0.27 -2.51 16 4 C 0.12 1.43 1.85 -27.88 -0.05 1.38 16 5 H 0.08 0.96 6.21 -51.92 -0.32 0.64 16 6 O -0.30 -4.35 7.29 -18.70 -0.14 -4.49 16 7 C 0.11 1.90 5.58 -38.90 -0.22 1.68 16 8 C -0.17 -2.93 9.97 -39.47 -0.39 -3.32 16 9 C -0.06 -1.18 9.43 -39.18 -0.37 -1.55 16 10 C -0.14 -3.24 5.89 -104.81 -0.62 -3.86 16 11 C 0.39 11.11 6.91 -34.43 -0.24 10.87 16 12 O -0.54 -17.48 14.89 5.08 0.08 -17.40 16 13 C -0.52 -14.24 8.86 -37.44 -0.33 -14.58 16 14 H 0.07 1.84 6.01 -52.49 -0.32 1.52 16 15 C 0.08 2.14 5.50 -17.31 -0.10 2.05 16 16 N -0.74 -21.29 11.73 55.57 0.65 -20.64 16 17 Si 0.91 19.27 29.56 -169.99 -5.03 14.24 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 21 C -0.06 -1.21 9.59 -39.18 -0.38 -1.59 16 22 C -0.21 -3.81 8.55 -39.47 -0.34 -4.15 16 23 C -0.07 -0.69 2.01 -90.62 -0.18 -0.88 16 24 C -0.12 -1.15 5.10 -26.73 -0.14 -1.28 16 25 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 26 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 27 C -0.12 -0.96 5.92 -26.75 -0.16 -1.12 16 28 C -0.11 -1.04 4.82 -26.75 -0.13 -1.17 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 1.67 6.25 -52.49 -0.33 1.34 16 33 H 0.12 1.09 8.05 -52.49 -0.42 0.67 16 34 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.13 2.61 6.19 -52.48 -0.33 2.28 16 36 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 37 H 0.12 2.76 7.65 -52.48 -0.40 2.36 16 38 H 0.12 1.84 5.70 -52.49 -0.30 1.54 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.83 7.82 -51.93 -0.41 0.42 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 49 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -31.70 388.12 -10.57 -42.27 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.80 Total: 5.28 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -4.18 Total: -25.11 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.65 Total: -20.64 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.70 -10.57 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525035.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.581 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds