Wall clock time and date at job start Tue Mar 31 2020 15:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47157 * 2 1 4 4 C 1.34222 * 116.99880 * 179.97438 * 3 2 1 5 5 O 1.20832 * 120.00444 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00006 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47445 * 175.60978 * 6 4 3 8 8 C 1.46898 * 111.00207 * 288.52649 * 7 6 4 9 9 C 1.50704 * 109.46670 * 293.85305 * 8 7 6 10 10 H 1.07996 * 120.00591 * 5.21134 * 9 8 7 11 11 C 1.37879 * 119.99818 * 185.21843 * 9 8 7 12 12 N 1.31516 * 120.00075 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99907 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47301 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.46866 * 119.99852 * 13 11 9 16 16 H 1.48500 * 109.47158 * 239.99516 * 13 11 9 17 17 C 1.46894 * 111.00440 * 164.56633 * 7 6 4 18 18 H 1.09006 * 109.49923 * 63.87533 * 17 7 6 19 19 C 1.53118 * 109.53463 * 303.78371 * 17 7 6 20 20 C 1.53123 * 109.16161 * 182.38285 * 19 17 7 21 21 C 1.53038 * 109.27707 * 57.65183 * 20 19 17 22 22 H 1.08998 * 109.46422 * 60.84014 * 21 20 19 23 23 C 1.50698 * 109.46085 * 180.80589 * 21 20 19 24 24 O 1.20829 * 119.99790 * 100.05128 * 23 21 20 25 25 O 1.34227 * 120.00151 * 280.05226 * 23 21 20 26 26 C 1.45198 * 117.00277 * 179.97438 * 25 23 21 27 27 N 1.46852 * 109.52309 * 300.82123 * 21 20 19 28 28 C 1.46846 * 111.19624 * 61.74286 * 27 21 20 29 29 H 1.09007 * 109.46826 * 60.00344 * 1 2 3 30 30 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47342 * 300.00194 * 1 2 3 32 32 H 1.09000 * 109.47342 * 239.99806 * 2 1 3 33 33 H 1.08998 * 109.46788 * 119.99879 * 2 1 3 34 34 H 1.09004 * 109.46964 * 55.61737 * 6 4 3 35 35 H 1.08998 * 109.47508 * 295.61168 * 6 4 3 36 36 H 1.09004 * 109.47253 * 53.84798 * 8 7 6 37 37 H 1.08998 * 109.47491 * 173.85182 * 8 7 6 38 38 H 0.97003 * 120.00068 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.52144 * 302.28347 * 19 17 7 40 40 H 1.09002 * 109.52801 * 62.47531 * 19 17 7 41 41 H 1.09002 * 109.50434 * 177.59359 * 20 19 17 42 42 H 1.09000 * 109.50215 * 297.71308 * 20 19 17 43 43 H 1.08998 * 109.47421 * 179.97438 * 26 25 23 44 44 H 1.09002 * 109.47190 * 300.00569 * 26 25 23 45 45 H 1.09011 * 109.47207 * 59.99975 * 26 25 23 46 46 H 1.00899 * 110.99949 * 297.64371 * 27 21 20 47 47 H 1.08999 * 109.46437 * 58.27310 * 28 27 21 48 48 H 1.09006 * 109.45835 * 178.25095 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3839 2.8621 0.1068 8 6 5.7925 2.4390 1.4528 9 6 5.4167 3.5047 2.4500 10 1 4.8496 4.3667 2.1312 11 6 5.7970 3.3791 3.7693 12 7 6.4873 2.3292 4.1577 13 14 5.3318 4.7004 5.0052 14 1 4.5619 5.7697 4.3204 15 1 4.5002 4.1018 6.0801 16 1 6.5640 5.2801 5.5974 17 6 6.0047 4.1438 -0.2533 18 1 5.6989 4.9093 0.4599 19 6 5.5605 4.5503 -1.6612 20 6 6.2585 5.8562 -2.0510 21 6 7.7744 5.6620 -1.9717 22 1 8.0772 4.8791 -2.6669 23 6 8.4654 6.9509 -2.3355 24 8 8.8897 7.6751 -1.4664 25 8 8.6095 7.2944 -3.6251 26 6 9.2846 8.5498 -3.9015 27 7 8.1488 5.2749 -0.6055 28 6 7.5279 3.9994 -0.2261 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5229 3.4954 0.8476 35 1 3.6496 3.4424 -0.9271 36 1 5.2884 1.5073 1.7095 37 1 6.8715 2.2861 1.4738 38 1 6.7546 2.2407 5.0860 39 1 5.8317 3.7670 -2.3690 40 1 4.4804 4.6965 -1.6744 41 1 5.9792 6.1283 -3.0689 42 1 5.9568 6.6486 -1.3661 43 1 9.3343 8.7061 -4.9790 44 1 8.7322 9.3686 -3.4402 45 1 10.2945 8.5171 -3.4925 46 1 7.9135 6.0018 0.0536 47 1 7.8318 3.2241 -0.9295 48 1 7.8486 3.7241 0.7787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246904405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:11 Heat of formation + Delta-G solvation = -160.126967 kcal Electronic energy + Delta-G solvation = -29477.110971 eV Core-core repulsion = 25339.598132 eV Total energy + Delta-G solvation = -4137.512839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69851 -39.97982 -38.80922 -36.74880 -36.21928 -35.30950 -32.64301 -31.64037 -31.50879 -30.24958 -28.26378 -27.68868 -25.69625 -23.86479 -23.61053 -22.73920 -21.55895 -20.76245 -20.33136 -19.38824 -17.73960 -17.33580 -16.95322 -16.55514 -16.35124 -16.30117 -15.52653 -15.17842 -14.89778 -14.65605 -14.48618 -14.11463 -13.98235 -13.64008 -13.35165 -13.02891 -12.90501 -12.72887 -12.48312 -12.34705 -12.21421 -12.05942 -11.88938 -11.63173 -11.56836 -11.39052 -11.17255 -11.08466 -10.94777 -10.89958 -10.67873 -10.50434 -10.31495 -10.18319 -10.05763 -9.99267 -9.76520 -9.53674 -8.47417 -8.19811 -7.36676 -6.08298 -4.18778 2.18807 2.56374 2.85643 3.04007 3.23514 3.32574 3.33526 4.35442 4.40378 4.58840 4.80235 4.88983 4.95087 5.00893 5.02738 5.02984 5.08103 5.22323 5.25082 5.26450 5.31815 5.36129 5.39882 5.46336 5.67857 5.76028 5.81575 5.84958 5.93371 5.95490 6.00753 6.07943 6.14874 6.24549 6.28335 6.60490 6.70876 6.87303 6.99731 7.20136 7.49711 7.54261 7.74733 7.82712 7.86991 8.08536 8.18527 8.43415 8.90656 9.48639 10.96747 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009564 B = 0.003885 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.954468 B = 7206.258399 C = 9387.013370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.062 3.938 7 N -0.518 5.518 8 C 0.182 3.818 9 C -0.558 4.558 10 H 0.056 0.944 11 C 0.070 3.930 12 N -0.883 5.883 13 Si 0.886 3.114 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.059 3.941 18 H 0.057 0.943 19 C -0.119 4.119 20 C -0.142 4.142 21 C 0.098 3.902 22 H 0.116 0.884 23 C 0.468 3.532 24 O -0.497 6.497 25 O -0.361 6.361 26 C 0.036 3.964 27 N -0.667 5.667 28 C 0.073 3.927 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.353 0.647 47 H 0.077 0.923 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 5.207 -15.326 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.067 4.067 7 N -0.243 5.243 8 C 0.057 3.943 9 C -0.597 4.597 10 H 0.074 0.926 11 C -0.133 4.133 12 N -0.521 5.521 13 Si 0.714 3.286 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.051 4.051 18 H 0.075 0.925 19 C -0.157 4.157 20 C -0.182 4.182 21 C -0.014 4.014 22 H 0.133 0.867 23 C 0.310 3.690 24 O -0.383 6.383 25 O -0.278 6.278 26 C -0.058 4.058 27 N -0.299 5.299 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.172 0.828 47 H 0.095 0.905 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.198 4.386 -15.436 16.362 hybrid contribution -1.351 1.618 1.651 2.678 sum -4.549 6.004 -13.785 15.709 Atomic orbital electron populations 1.21783 0.93186 1.02503 1.03270 1.22881 0.94823 0.81114 1.02361 1.86478 1.25626 1.31621 1.84981 1.23809 0.79764 0.93287 0.72481 1.90636 1.59976 1.42901 1.43629 1.21533 0.91890 0.89770 1.03550 1.62262 1.03202 1.26906 1.31945 1.19930 0.97726 0.95868 0.80759 1.21712 1.36342 1.07338 0.94344 0.92567 1.24917 0.94691 0.95386 0.98343 1.69956 1.37127 1.27901 1.17087 0.86641 0.78392 0.81986 0.81617 1.19876 1.20990 1.20797 1.22184 0.96341 0.92281 0.94321 0.92494 1.21810 0.99818 0.95977 0.98084 1.22204 0.93749 0.99470 1.02802 1.21196 0.93107 0.92177 0.94879 0.86662 1.23804 0.76793 0.87950 0.80466 1.90660 1.45640 1.52336 1.49657 1.86503 1.71733 1.40716 1.28815 1.23235 0.97113 0.83370 1.02108 1.60635 1.61333 1.07083 1.00843 1.22095 0.90556 0.89485 1.03436 0.91776 0.90660 0.91553 0.91684 0.91399 0.89768 0.88369 0.94432 0.93791 0.92736 0.90714 0.91417 0.90520 0.91312 0.88237 0.92041 0.91903 0.82777 0.90494 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.15 10.22 -39.24 -0.40 -6.55 16 4 C 0.47 8.90 7.55 36.01 0.27 9.18 16 5 O -0.49 -10.78 14.79 -18.76 -0.28 -11.05 16 6 C 0.06 1.11 5.25 -4.97 -0.03 1.09 16 7 N -0.52 -10.26 4.19 -229.42 -0.96 -11.22 16 8 C 0.18 4.48 4.40 -4.97 -0.02 4.46 16 9 C -0.56 -14.39 7.43 -34.44 -0.26 -14.65 16 10 H 0.06 1.41 5.93 -52.49 -0.31 1.10 16 11 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 12 N -0.88 -25.39 13.29 55.43 0.74 -24.65 16 13 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.06 1.00 1.75 -67.64 -0.12 0.89 16 18 H 0.06 1.09 6.44 -51.93 -0.33 0.75 16 19 C -0.12 -1.57 4.91 -26.61 -0.13 -1.70 16 20 C -0.14 -1.67 5.34 -26.65 -0.14 -1.81 16 21 C 0.10 1.27 2.94 -68.87 -0.20 1.07 16 22 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 23 C 0.47 6.38 7.20 36.00 0.26 6.64 16 24 O -0.50 -8.16 15.94 -18.75 -0.30 -8.46 16 25 O -0.36 -4.19 10.56 -39.25 -0.41 -4.61 16 26 C 0.04 0.31 10.56 101.05 1.07 1.37 16 27 N -0.67 -10.37 6.28 -107.99 -0.68 -11.05 16 28 C 0.07 1.25 5.57 -3.84 -0.02 1.22 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.08 1.62 6.53 -51.93 -0.34 1.28 16 35 H 0.10 1.44 5.54 -51.93 -0.29 1.15 16 36 H 0.04 1.05 6.47 -51.93 -0.34 0.72 16 37 H 0.04 1.17 6.45 -51.93 -0.33 0.83 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.83 6.18 -51.93 -0.32 0.51 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 45 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.35 5.78 8.31 -39.29 -0.33 5.45 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.10 2.06 6.50 -51.93 -0.34 1.73 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -31.60 383.44 -7.90 -39.50 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.56 Total: 6.90 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 1.19 Total: 9.53 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.90 Total: -46.92 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.39 Total: -30.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.60 -7.90 -39.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246904405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.622 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds