Wall clock time and date at job start Tue Mar 31 2020 15:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45208 * 109.46924 * 2 1 4 4 C 1.34231 * 116.99929 * 179.97438 * 3 2 1 5 5 O 1.20818 * 119.99778 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99687 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.46853 * 174.17658 * 6 4 3 8 8 C 1.46898 * 111.00085 * 299.41182 * 7 6 4 9 9 C 1.50703 * 109.47235 * 296.24533 * 8 7 6 10 10 H 1.07997 * 119.99749 * 3.84464 * 9 8 7 11 11 C 1.37868 * 120.00028 * 183.84621 * 9 8 7 12 12 N 1.31514 * 120.00527 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46790 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47102 * 120.00196 * 13 11 9 16 16 H 1.48499 * 109.47257 * 240.00324 * 13 11 9 17 17 C 1.46904 * 110.99954 * 63.36415 * 7 6 4 18 18 H 1.09003 * 109.53630 * 295.94966 * 17 7 6 19 19 C 1.53119 * 109.49968 * 56.04691 * 17 7 6 20 20 C 1.53120 * 109.16032 * 177.59313 * 19 17 7 21 21 C 1.53037 * 109.27723 * 302.34859 * 20 19 17 22 22 H 1.09006 * 109.45856 * 179.19239 * 21 20 19 23 23 C 1.50698 * 109.45860 * 299.15716 * 21 20 19 24 24 O 1.20830 * 119.99397 * 124.81431 * 23 21 20 25 25 O 1.34227 * 120.00600 * 304.81252 * 23 21 20 26 26 C 1.45193 * 117.00197 * 180.02562 * 25 23 21 27 27 N 1.46843 * 109.52569 * 59.17828 * 21 20 19 28 28 C 1.46849 * 111.19774 * 298.25561 * 27 21 20 29 29 H 1.09003 * 109.47008 * 60.00546 * 1 2 3 30 30 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47567 * 300.00148 * 1 2 3 32 32 H 1.08992 * 109.47594 * 239.99723 * 2 1 3 33 33 H 1.08995 * 109.47037 * 119.99100 * 2 1 3 34 34 H 1.09002 * 109.47058 * 54.17652 * 6 4 3 35 35 H 1.08993 * 109.47047 * 294.17948 * 6 4 3 36 36 H 1.09005 * 109.47486 * 56.24235 * 8 7 6 37 37 H 1.09002 * 109.47115 * 176.24350 * 8 7 6 38 38 H 0.96994 * 120.00871 * 179.97438 * 12 11 9 39 39 H 1.08999 * 109.52461 * 57.68772 * 19 17 7 40 40 H 1.09004 * 109.52322 * 297.49815 * 19 17 7 41 41 H 1.09002 * 109.50039 * 62.28384 * 20 19 17 42 42 H 1.09001 * 109.50349 * 182.40069 * 20 19 17 43 43 H 1.09001 * 109.47058 * 180.02562 * 26 25 23 44 44 H 1.08999 * 109.47131 * 299.99996 * 26 25 23 45 45 H 1.09000 * 109.47311 * 60.00660 * 26 25 23 46 46 H 1.00896 * 111.00186 * 62.35322 * 27 21 20 47 47 H 1.09000 * 109.46164 * 301.73532 * 28 27 21 48 48 H 1.09001 * 109.46583 * 181.75543 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0806 0.5868 0.0015 6 6 3.9206 2.9376 0.0000 7 7 5.3809 2.8636 0.1413 8 6 5.7554 2.2120 1.4034 9 6 5.2767 3.0485 2.5620 10 1 4.6937 3.9393 2.3803 11 6 5.5831 2.6767 3.8537 12 7 6.2935 1.5923 4.0750 13 14 4.9905 3.7141 5.2898 14 1 4.2171 4.8735 4.7770 15 1 4.1226 2.8911 6.1700 16 1 6.1600 4.2020 6.0640 17 6 5.9866 2.1752 -1.0065 18 1 5.6459 1.1401 -1.0320 19 6 5.5748 2.8811 -2.3014 20 6 6.2582 2.1945 -3.4872 21 6 7.7747 2.2269 -3.2845 22 1 8.2636 1.7262 -4.1202 23 6 8.2413 3.6582 -3.2145 24 8 8.8772 4.0402 -2.2607 25 8 7.9507 4.5085 -4.2116 26 6 8.4327 5.8714 -4.0772 27 7 8.1175 1.5387 -2.0335 28 6 7.5110 2.2083 -0.8757 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5137 0.8900 34 1 3.5032 3.5037 0.8327 35 1 3.6709 3.4336 -0.9379 36 1 5.2952 1.2251 1.4534 37 1 6.8395 2.1103 1.4522 38 1 6.5094 1.3309 4.9838 39 1 5.8811 3.9263 -2.2597 40 1 4.4929 2.8221 -2.4202 41 1 5.9217 1.1597 -3.5518 42 1 6.0027 2.7190 -4.4080 43 1 8.1294 6.4517 -4.9486 44 1 8.0101 6.3193 -3.1778 45 1 9.5203 5.8667 -4.0042 46 1 7.8494 0.5667 -2.0703 47 1 7.8497 3.2436 -0.8364 48 1 7.8083 1.6940 0.0382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246904406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:14 Heat of formation + Delta-G solvation = -147.542426 kcal Electronic energy + Delta-G solvation = -30448.672787 eV Core-core repulsion = 26311.705654 eV Total energy + Delta-G solvation = -4136.967132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92654 -40.18803 -38.50809 -36.81931 -36.08415 -35.04282 -32.62530 -31.66652 -31.54147 -30.16453 -28.15317 -27.67044 -25.76535 -23.97894 -23.41259 -22.76438 -21.64835 -20.98036 -20.10646 -19.57851 -17.43058 -17.22246 -16.80535 -16.50848 -16.30363 -16.25062 -15.59926 -15.35305 -14.99143 -14.60808 -14.52624 -14.11674 -13.81447 -13.68641 -13.22940 -13.07376 -12.88596 -12.80165 -12.68076 -12.38470 -12.12708 -12.08604 -11.76415 -11.61717 -11.46392 -11.28183 -11.14677 -11.09522 -10.86120 -10.69116 -10.66972 -10.53871 -10.33219 -10.24527 -10.13019 -9.82087 -9.56165 -9.17050 -8.41520 -8.22131 -7.32452 -6.00964 -4.02749 2.32921 2.67580 2.76440 3.15979 3.31403 3.38878 3.42470 4.22410 4.43299 4.66271 4.74153 4.83972 5.00886 5.02800 5.07040 5.07226 5.13508 5.17905 5.24357 5.32300 5.36984 5.40413 5.46062 5.51671 5.65884 5.75025 5.82040 5.85904 5.92967 5.96020 6.02017 6.13943 6.15310 6.20319 6.38628 6.53050 6.81307 6.90361 6.94734 7.27764 7.47429 7.51136 7.74373 7.91179 7.96382 8.14020 8.34338 8.47767 9.03169 9.60377 11.09616 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.004680 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.037383 B = 5980.921017 C = 7970.959958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.368 6.368 4 C 0.434 3.566 5 O -0.501 6.501 6 C 0.068 3.932 7 N -0.497 5.497 8 C 0.172 3.828 9 C -0.514 4.514 10 H 0.062 0.938 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.283 1.283 17 C 0.030 3.970 18 H 0.068 0.932 19 C -0.121 4.121 20 C -0.145 4.145 21 C 0.099 3.901 22 H 0.116 0.884 23 C 0.464 3.536 24 O -0.478 6.478 25 O -0.364 6.364 26 C 0.036 3.964 27 N -0.663 5.663 28 C 0.049 3.951 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.021 0.979 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.351 0.649 47 H 0.102 0.898 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 1.063 -17.903 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.276 3.724 5 O -0.388 6.388 6 C -0.063 4.063 7 N -0.220 5.220 8 C 0.048 3.952 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.209 1.209 17 C -0.081 4.081 18 H 0.086 0.914 19 C -0.158 4.158 20 C -0.185 4.185 21 C -0.013 4.013 22 H 0.134 0.866 23 C 0.305 3.695 24 O -0.363 6.363 25 O -0.281 6.281 26 C -0.058 4.058 27 N -0.294 5.294 28 C -0.080 4.080 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.171 0.829 47 H 0.121 0.879 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.262 1.592 -17.365 17.740 hybrid contribution -1.444 -0.649 0.950 1.846 sum -4.706 0.943 -16.415 17.102 Atomic orbital electron populations 1.21776 0.93231 1.02436 1.03251 1.22864 0.94884 0.81582 1.02134 1.86571 1.26187 1.31401 1.84360 1.25991 0.79939 0.94849 0.71626 1.90556 1.59493 1.43726 1.45065 1.22240 0.90319 0.89038 1.04669 1.62709 1.03075 1.52166 1.04033 1.20146 0.97721 0.94124 0.83212 1.21200 1.33960 1.09849 0.90296 0.91985 1.24949 0.95272 0.95217 0.98903 1.69970 1.38440 1.24011 1.20767 0.86498 0.78515 0.80303 0.82443 1.19640 1.21206 1.20946 1.22641 0.96960 0.98000 0.90466 0.91397 1.21781 1.00036 1.00113 0.93907 1.22254 0.94097 1.02377 0.99759 1.21136 0.95380 0.88820 0.95925 0.86606 1.23522 0.77194 0.88550 0.80190 1.90658 1.35820 1.77758 1.32050 1.86466 1.72550 1.22419 1.46632 1.23222 1.00000 0.79256 1.03305 1.60515 1.62042 1.06050 1.00810 1.22464 0.90327 1.02754 0.92433 0.91830 0.90775 0.91509 0.92004 0.91449 0.86039 0.88418 0.96153 0.94019 0.92978 0.91468 0.91886 0.90594 0.90158 0.88376 0.91738 0.92062 0.82902 0.87948 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.15 0.38 -1.20 16 2 C 0.06 0.86 6.19 37.15 0.23 1.09 16 3 O -0.37 -6.32 10.22 -39.26 -0.40 -6.72 16 4 C 0.43 8.39 7.28 36.01 0.26 8.66 16 5 O -0.50 -10.89 11.40 -18.74 -0.21 -11.10 16 6 C 0.07 1.26 5.34 -4.97 -0.03 1.24 16 7 N -0.50 -10.44 4.59 -229.41 -1.05 -11.50 16 8 C 0.17 4.47 4.20 -4.98 -0.02 4.45 16 9 C -0.51 -14.30 8.57 -34.44 -0.30 -14.60 16 10 H 0.06 1.68 6.80 -52.49 -0.36 1.32 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.03 0.54 1.71 -67.63 -0.12 0.42 16 18 H 0.07 1.34 5.55 -51.93 -0.29 1.05 16 19 C -0.12 -1.75 4.59 -26.61 -0.12 -1.87 16 20 C -0.15 -1.67 5.50 -26.65 -0.15 -1.82 16 21 C 0.10 1.24 3.60 -68.88 -0.25 0.99 16 22 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 23 C 0.46 6.73 5.78 36.00 0.21 6.94 16 24 O -0.48 -8.63 13.68 -18.75 -0.26 -8.89 16 25 O -0.36 -4.45 10.30 -39.25 -0.40 -4.86 16 26 C 0.04 0.35 10.56 101.05 1.07 1.42 16 27 N -0.66 -9.93 6.46 -107.99 -0.70 -10.63 16 28 C 0.05 0.91 5.19 -3.83 -0.02 0.89 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 33 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 34 H 0.12 2.36 6.61 -51.93 -0.34 2.01 16 35 H 0.10 1.49 6.10 -51.93 -0.32 1.17 16 36 H 0.02 0.59 5.55 -51.93 -0.29 0.30 16 37 H 0.04 1.18 5.95 -51.93 -0.31 0.87 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.07 1.04 7.31 -51.93 -0.38 0.66 16 40 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 45 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 46 H 0.35 4.66 8.86 -39.29 -0.35 4.31 16 47 H 0.10 2.14 5.36 -51.93 -0.28 1.86 16 48 H 0.09 1.90 6.30 -51.93 -0.33 1.57 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -33.72 373.57 -7.97 -41.69 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.35 Total: 7.58 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 1.06 Total: 8.18 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.01 Total: -48.24 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.28 Total: -31.57 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.72 -7.97 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246904406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.852 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds