Wall clock time and date at job start Tue Mar 31 2020 15:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00093 * 2 1 4 4 O 1.20822 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00218 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.86786 * 319.56335 * 5 3 2 7 7 C 1.54367 * 109.89939 * 80.70164 * 5 3 2 8 8 C 1.55156 * 102.91691 * 141.58093 * 7 5 3 9 9 H 1.09005 * 111.00893 * 82.64291 * 8 7 5 10 10 N 1.46899 * 111.00409 * 206.45251 * 8 7 5 11 11 C 1.46906 * 111.00346 * 201.81706 * 10 8 7 12 12 C 1.50698 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.54904 * 101.61955 * 324.54616 * 8 7 5 21 21 N 1.47015 * 109.88519 * 198.54627 * 5 3 2 22 22 C 1.34778 * 125.65001 * 61.67442 * 21 5 3 23 23 O 1.21513 * 119.99874 * 359.97438 * 22 21 5 24 24 O 1.34637 * 120.00321 * 179.97438 * 22 21 5 25 25 C 1.45200 * 117.00082 * 179.97438 * 24 22 21 26 26 C 1.53005 * 109.47000 * 60.00116 * 25 24 22 27 27 C 1.52999 * 109.46942 * 180.02562 * 25 24 22 28 28 C 1.52991 * 109.47163 * 300.00180 * 25 24 22 29 29 H 1.08998 * 109.47328 * 299.99900 * 1 2 3 30 30 H 1.08997 * 109.47290 * 60.00059 * 1 2 3 31 31 H 1.08999 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.08995 * 110.70976 * 23.23754 * 7 5 3 33 33 H 1.09001 * 110.75696 * 259.94457 * 7 5 3 34 34 H 1.00899 * 111.00470 * 325.77244 * 10 8 7 35 35 H 1.08998 * 109.46394 * 60.00318 * 11 10 8 36 36 H 1.08993 * 109.46896 * 299.99985 * 11 10 8 37 37 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 38 38 H 1.08999 * 110.37208 * 155.82792 * 20 8 7 39 39 H 1.09001 * 110.36577 * 278.04425 * 20 8 7 40 40 H 1.09007 * 109.46868 * 59.99656 * 26 25 24 41 41 H 1.08995 * 109.46729 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.47004 * 300.00318 * 26 25 24 43 43 H 1.08995 * 109.47272 * 59.99859 * 27 25 24 44 44 H 1.09004 * 109.47078 * 180.02562 * 27 25 24 45 45 H 1.09005 * 109.47330 * 299.99955 * 27 25 24 46 46 H 1.09003 * 109.47487 * 60.00136 * 28 25 24 47 47 H 1.09007 * 109.47352 * 180.02562 * 28 25 24 48 48 H 1.09004 * 109.47344 * 299.99886 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9774 0.5149 0.6640 7 6 4.1027 1.0684 -1.4333 8 6 5.2840 2.0716 -1.5092 9 1 6.1859 1.6474 -1.0677 10 7 5.5280 2.4937 -2.8949 11 6 6.8979 2.9986 -3.0581 12 6 7.1107 3.4205 -4.4890 13 1 6.3084 3.3237 -5.2056 14 6 8.3293 3.9311 -4.8832 15 7 9.3060 4.0495 -4.0106 16 14 8.5928 4.4548 -6.6568 17 1 9.9777 4.9651 -6.8218 18 1 7.6253 5.5260 -7.0058 19 1 8.3853 3.2892 -7.5533 20 6 4.7490 3.2487 -0.6563 21 7 3.9972 2.6098 0.4392 22 6 3.7472 3.1585 1.6446 23 8 3.1144 2.5373 2.4754 24 8 4.1984 4.3949 1.9283 25 6 3.8913 4.9226 3.2457 26 6 4.4952 4.0093 4.3144 27 6 4.4810 6.3277 3.3823 28 6 2.3737 4.9870 3.4282 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.3388 1.3158 -2.1702 33 1 4.4555 0.0462 -1.5701 34 1 5.3408 1.7412 -3.5405 35 1 7.6078 2.2121 -2.8022 36 1 7.0505 3.8541 -2.4001 37 1 9.1690 3.7779 -3.0895 38 1 5.5766 3.8349 -0.2569 39 1 4.0905 3.8805 -1.2524 40 1 5.5765 3.9634 4.1843 41 1 4.2650 4.4057 5.3033 42 1 4.0748 3.0084 4.2168 43 1 4.0504 6.9781 2.6210 44 1 4.2508 6.7238 4.3714 45 1 5.5623 6.2823 3.2521 46 1 1.9531 3.9861 3.3307 47 1 2.1431 5.3836 4.4170 48 1 1.9434 5.6376 2.6668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256249281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:08 Heat of formation + Delta-G solvation = -158.490427 kcal Electronic energy + Delta-G solvation = -29706.631386 eV Core-core repulsion = 25569.189513 eV Total energy + Delta-G solvation = -4137.441873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24381 -40.33408 -38.71404 -36.76002 -36.42157 -34.89482 -34.10229 -32.65125 -31.04413 -29.16541 -27.56880 -27.49188 -27.47515 -25.66224 -24.41738 -22.60261 -22.15990 -20.72868 -20.61420 -19.35436 -18.12029 -17.99365 -16.97956 -16.71571 -16.66496 -16.38542 -15.89088 -15.64532 -14.96758 -14.44765 -14.18381 -13.97752 -13.79433 -13.71093 -13.67004 -13.38439 -13.11858 -12.97717 -12.61059 -12.49167 -12.31360 -12.25102 -12.03290 -11.99792 -11.91400 -11.59287 -11.46134 -11.34114 -11.27579 -11.10463 -10.92208 -10.72489 -10.63305 -10.43744 -10.37005 -10.11017 -10.09074 -8.91226 -8.70998 -8.48417 -7.66858 -6.43539 -4.13682 1.79780 2.14670 2.48077 2.93973 3.42198 3.44567 3.62956 3.78247 4.27053 4.40266 4.50033 4.60538 4.63132 4.66805 4.79106 4.84946 4.89942 4.94899 5.03001 5.31780 5.33312 5.34261 5.34825 5.41378 5.43254 5.50177 5.57675 5.65385 5.69303 5.74263 5.76118 5.84110 5.89903 6.04003 6.16768 6.18821 6.22593 6.24245 6.40613 6.81786 7.01150 7.33666 7.60753 7.65618 7.99975 8.26645 8.29244 8.48396 8.79469 9.57854 10.96320 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.003471 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.306035 B = 8065.945900 C =10116.349311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.457 3.543 4 O -0.490 6.490 5 C 0.173 3.827 6 H 0.115 0.885 7 C -0.121 4.121 8 C 0.076 3.924 9 H 0.062 0.938 10 N -0.669 5.669 11 C 0.183 3.817 12 C -0.598 4.598 13 H 0.057 0.943 14 C 0.016 3.984 15 N -0.911 5.911 16 Si 1.073 2.927 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.288 1.288 20 C 0.115 3.885 21 N -0.588 5.588 22 C 0.679 3.321 23 O -0.569 6.569 24 O -0.353 6.353 25 C 0.135 3.865 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.182 4.182 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.340 0.660 35 H -0.020 1.020 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 -5.057 14.061 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.297 3.703 4 O -0.375 6.375 5 C 0.068 3.932 6 H 0.132 0.868 7 C -0.159 4.159 8 C -0.036 4.036 9 H 0.080 0.920 10 N -0.301 5.301 11 C 0.056 3.944 12 C -0.637 4.637 13 H 0.075 0.925 14 C -0.188 4.188 15 N -0.547 5.547 16 Si 0.901 3.099 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.007 4.007 21 N -0.329 5.329 22 C 0.435 3.565 23 O -0.459 6.459 24 O -0.267 6.267 25 C 0.098 3.902 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.239 4.239 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.158 0.842 35 H -0.002 1.002 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.256 -3.555 13.505 19.255 hybrid contribution -0.989 -1.322 1.252 2.071 sum -14.245 -4.877 14.757 21.082 Atomic orbital electron populations 1.23247 0.76304 1.03564 1.02560 1.86480 1.23458 1.33188 1.84258 1.23996 0.92092 0.81716 0.72516 1.90670 1.66585 1.36361 1.43921 1.20977 0.87154 0.85787 0.99329 0.86778 1.22879 0.99374 1.01624 0.92056 1.22627 0.95595 0.92403 0.92933 0.92046 1.60492 1.30424 1.38492 1.00694 1.19755 0.82394 0.93892 0.98317 1.21965 1.00656 1.46602 0.94452 0.92457 1.25854 0.92238 0.94498 1.06169 1.70805 1.33943 1.45103 1.04881 0.83481 0.76138 0.76463 0.73834 1.20819 1.21322 1.21445 1.22494 0.95760 0.95912 0.86574 1.46831 1.56491 1.16972 1.12609 1.17321 0.77469 0.80431 0.81252 1.90875 1.44356 1.63602 1.47052 1.86357 1.73281 1.29690 1.37416 1.22100 0.95797 0.93736 0.78558 1.22518 1.01347 1.02113 0.98010 1.21859 1.02037 0.93175 1.02732 1.22497 0.94345 1.04842 1.02205 0.91976 0.91892 0.88063 0.88840 0.88123 0.84151 1.00235 0.96068 0.92266 0.89655 0.89636 0.92051 0.91203 0.89490 0.91306 0.90195 0.91285 0.89509 0.91291 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.46 10.56 -39.24 -0.41 -4.88 16 3 C 0.46 6.73 6.40 36.01 0.23 6.96 16 4 O -0.49 -8.68 15.89 -18.75 -0.30 -8.98 16 5 C 0.17 2.34 3.37 -68.08 -0.23 2.11 16 6 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 7 C -0.12 -1.50 5.91 -24.87 -0.15 -1.64 16 8 C 0.08 1.19 3.34 -65.57 -0.22 0.97 16 9 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 10 N -0.67 -12.90 6.38 -105.73 -0.67 -13.58 16 11 C 0.18 4.44 4.63 -4.97 -0.02 4.41 16 12 C -0.60 -16.35 9.32 -34.44 -0.32 -16.67 16 13 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 15 N -0.91 -27.07 13.65 55.43 0.76 -26.32 16 16 Si 1.07 24.66 29.90 -169.99 -5.08 19.58 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.12 1.86 6.61 -2.53 -0.02 1.84 16 21 N -0.59 -9.18 2.75 -170.04 -0.47 -9.65 16 22 C 0.68 11.23 7.33 54.06 0.40 11.63 16 23 O -0.57 -9.87 11.69 -19.28 -0.23 -10.10 16 24 O -0.35 -5.50 9.42 -40.32 -0.38 -5.88 16 25 C 0.13 1.68 1.13 -90.62 -0.10 1.57 16 26 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 27 C -0.14 -1.38 8.85 37.16 0.33 -1.05 16 28 C -0.18 -2.21 8.37 37.15 0.31 -1.89 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.34 6.16 8.48 -39.29 -0.33 5.82 16 35 H -0.02 -0.50 7.95 -51.93 -0.41 -0.92 16 36 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 37 H 0.27 7.87 7.22 -40.82 -0.29 7.58 16 38 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -33.43 392.04 -7.39 -40.82 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.00 Total: 4.81 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 1.49 Total: 8.26 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.39 Total: -49.54 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.32 Total: -29.83 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.43 -7.39 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256249281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.670 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds