Wall clock time and date at job start Tue Mar 31 2020 15:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00220 * 2 1 4 4 O 1.20827 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00226 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.99613 * 319.64415 * 5 3 2 7 7 C 1.54314 * 109.77091 * 80.79773 * 5 3 2 8 8 C 1.55158 * 102.86002 * 141.88689 * 7 5 3 9 9 H 1.08997 * 111.03854 * 206.21838 * 8 7 5 10 10 N 1.46504 * 111.00534 * 82.37660 * 8 7 5 11 11 C 1.46500 * 120.00020 * 306.35471 * 10 8 7 12 12 C 1.36937 * 119.99590 * 126.34716 * 10 8 7 13 13 H 1.07993 * 120.00253 * 22.72635 * 12 10 8 14 14 C 1.38816 * 119.99536 * 202.72239 * 12 10 8 15 15 N 1.31614 * 120.00170 * 17.20683 * 14 12 10 16 16 Si 1.86797 * 119.99758 * 197.20796 * 14 12 10 17 17 H 1.48500 * 109.47262 * 90.00303 * 16 14 12 18 18 H 1.48504 * 109.47137 * 210.00132 * 16 14 12 19 19 H 1.48500 * 109.47362 * 329.99927 * 16 14 12 20 20 C 1.54912 * 101.58407 * 324.30348 * 8 7 5 21 21 N 1.47019 * 109.88320 * 198.54760 * 5 3 2 22 22 C 1.34783 * 125.64688 * 61.67812 * 21 5 3 23 23 O 1.21513 * 120.00059 * 359.97438 * 22 21 5 24 24 O 1.34639 * 120.00049 * 179.71485 * 22 21 5 25 25 C 1.45200 * 117.00054 * 180.02562 * 24 22 21 26 26 C 1.53006 * 109.47006 * 60.00263 * 25 24 22 27 27 C 1.52996 * 109.46789 * 180.02562 * 25 24 22 28 28 C 1.52995 * 109.46746 * 300.00125 * 25 24 22 29 29 H 1.08992 * 109.47191 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46710 * 299.99899 * 1 2 3 31 31 H 1.09002 * 109.46985 * 59.99587 * 1 2 3 32 32 H 1.09005 * 110.92578 * 23.47516 * 7 5 3 33 33 H 1.08996 * 110.59354 * 260.14598 * 7 5 3 34 34 H 1.08991 * 109.47325 * 84.79156 * 11 10 8 35 35 H 1.09003 * 109.46777 * 204.79936 * 11 10 8 36 36 H 1.09001 * 109.46718 * 324.79135 * 11 10 8 37 37 H 0.97002 * 119.99852 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.36345 * 278.17252 * 20 8 7 39 39 H 1.09000 * 110.36808 * 155.84650 * 20 8 7 40 40 H 1.08995 * 109.47265 * 59.99890 * 26 25 24 41 41 H 1.08995 * 109.46722 * 180.02562 * 26 25 24 42 42 H 1.09005 * 109.46640 * 300.00027 * 26 25 24 43 43 H 1.08998 * 109.47482 * 59.99890 * 27 25 24 44 44 H 1.09008 * 109.46837 * 180.02562 * 27 25 24 45 45 H 1.09003 * 109.47093 * 299.99750 * 27 25 24 46 46 H 1.08998 * 109.47666 * 60.00279 * 28 25 24 47 47 H 1.09008 * 109.46514 * 179.97438 * 28 25 24 48 48 H 1.08992 * 109.47367 * 299.99568 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9798 0.5147 0.6624 7 6 4.0993 1.0705 -1.4343 8 6 5.2855 2.0680 -1.5073 9 1 5.4704 2.3817 -2.5347 10 7 6.4936 1.4918 -0.9116 11 6 6.4540 0.9549 0.4509 12 6 7.6597 1.4550 -1.6285 13 1 7.8128 2.1434 -2.4464 14 6 8.6452 0.5328 -1.3038 15 7 8.3501 -0.5104 -0.5575 16 14 10.3901 0.7725 -1.9261 17 1 11.1617 1.5715 -0.9405 18 1 11.0379 -0.5517 -2.1055 19 1 10.3579 1.4881 -3.2269 20 6 4.7537 3.2467 -0.6542 21 7 3.9974 2.6098 0.4393 22 6 3.7473 3.1584 1.6448 23 8 3.1146 2.5371 2.4756 24 8 4.2030 4.3927 1.9303 25 6 3.8966 4.9200 3.2481 26 6 4.4960 4.0032 4.3163 27 6 4.4915 6.3227 3.3869 28 6 2.3790 4.9900 3.4290 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.3376 1.3224 -2.1723 33 1 4.4473 0.0468 -1.5717 34 1 6.0978 -0.0749 0.4254 35 1 7.4550 0.9827 0.8815 36 1 5.7798 1.5577 1.0594 37 1 9.0388 -1.1545 -0.3303 38 1 4.0974 3.8806 -1.2504 39 1 5.5831 3.8290 -0.2528 40 1 5.5771 3.9533 4.1873 41 1 4.2656 4.3988 5.3054 42 1 4.0718 3.0040 4.2171 43 1 4.0642 6.9757 2.6259 44 1 4.2619 6.7184 4.3763 45 1 5.5727 6.2732 3.2578 46 1 1.9547 3.9909 3.3299 47 1 2.1490 5.3854 4.4185 48 1 1.9520 5.6431 2.6681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256274597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:17 Heat of formation + Delta-G solvation = -121.842926 kcal Electronic energy + Delta-G solvation = -31021.852496 eV Core-core repulsion = 26885.999777 eV Total energy + Delta-G solvation = -4135.852718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98668 -40.05915 -38.54605 -36.47088 -36.15775 -34.50444 -33.84776 -31.51423 -30.44429 -28.96152 -27.40172 -27.34257 -27.29827 -25.93335 -24.25068 -22.95793 -22.29941 -20.40427 -19.73155 -19.04249 -17.91797 -17.65102 -16.83794 -16.41639 -16.37449 -16.15298 -15.59801 -15.32883 -14.66166 -14.32705 -14.12172 -13.73933 -13.58928 -13.30858 -13.18420 -13.11872 -12.81173 -12.46550 -12.29472 -12.16255 -12.01736 -11.89624 -11.81607 -11.72756 -11.58161 -11.33834 -11.19139 -11.11508 -10.91469 -10.80682 -10.76072 -10.68506 -10.35633 -10.26052 -10.19808 -9.97483 -9.83382 -9.75697 -8.67122 -8.44687 -6.86364 -5.83625 -3.27514 2.13195 2.44931 2.80241 3.27580 3.35144 3.42233 3.43133 4.15433 4.41394 4.78121 4.81053 4.82558 4.87962 4.96651 5.12960 5.13701 5.20738 5.21918 5.42204 5.48089 5.50653 5.53642 5.56781 5.64093 5.71078 5.74268 5.81150 5.92690 5.99627 6.00949 6.08165 6.18718 6.27267 6.36965 6.42772 6.46142 6.55665 6.61050 6.66934 6.81645 7.28504 7.59186 7.70849 7.74751 7.95392 8.30346 8.60752 9.12615 9.75489 10.24676 11.22651 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.004887 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.259969 B = 5728.128927 C = 7613.555919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.458 3.542 4 O -0.502 6.502 5 C 0.174 3.826 6 H 0.116 0.884 7 C -0.139 4.139 8 C 0.172 3.828 9 H 0.097 0.903 10 N -0.580 5.580 11 C 0.153 3.847 12 C -0.265 4.265 13 H 0.072 0.928 14 C 0.008 3.992 15 N -0.899 5.899 16 Si 0.904 3.096 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.278 1.278 20 C 0.083 3.917 21 N -0.575 5.575 22 C 0.678 3.322 23 O -0.573 6.573 24 O -0.356 6.356 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.139 4.139 28 C -0.181 4.181 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.007 0.993 37 H 0.254 0.746 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 7.187 4.070 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.299 3.701 4 O -0.389 6.389 5 C 0.069 3.931 6 H 0.134 0.866 7 C -0.179 4.179 8 C 0.060 3.940 9 H 0.114 0.886 10 N -0.300 5.300 11 C 0.008 3.992 12 C -0.394 4.394 13 H 0.090 0.910 14 C -0.192 4.192 15 N -0.543 5.543 16 Si 0.734 3.266 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.204 1.204 20 C -0.041 4.041 21 N -0.315 5.315 22 C 0.434 3.566 23 O -0.463 6.463 24 O -0.270 6.270 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.196 4.196 28 C -0.238 4.238 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.202 7.245 4.542 14.900 hybrid contribution 0.571 0.044 -0.090 0.579 sum -11.631 7.288 4.452 14.430 Atomic orbital electron populations 1.23206 0.76854 1.03376 1.02244 1.86531 1.23018 1.33445 1.84168 1.24341 0.92485 0.81420 0.71812 1.90618 1.66905 1.36411 1.44921 1.21116 0.85695 0.85781 1.00531 0.86634 1.23343 0.99542 1.04701 0.90339 1.21507 0.86124 0.90057 0.96290 0.88551 1.43906 1.05011 1.69194 1.11888 1.20935 0.99573 0.94797 0.83854 1.19219 0.92318 1.13323 1.14536 0.91036 1.24985 0.99258 0.95006 0.99905 1.70094 1.32255 1.11064 1.40848 0.86272 0.84838 0.76963 0.78525 1.21463 1.21803 1.20375 1.23274 0.94936 0.97635 0.88288 1.46804 1.55639 1.16756 1.12343 1.17313 0.77533 0.80212 0.81537 1.90859 1.44849 1.63481 1.47156 1.86319 1.73342 1.30359 1.37003 1.22021 0.95528 0.93573 0.78994 1.22514 1.01567 1.02229 0.97718 1.21838 1.01969 0.93379 1.02444 1.22489 0.94604 1.04819 1.01887 0.88236 0.92137 0.92171 0.90850 0.87678 0.96352 0.92687 0.97513 0.93564 0.91671 0.89335 0.91950 0.91488 0.89333 0.91597 0.90399 0.91339 0.89437 0.91505 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.56 10.57 -39.25 -0.41 -5.97 16 3 C 0.46 8.06 6.40 36.01 0.23 8.29 16 4 O -0.50 -9.75 15.89 -18.75 -0.30 -10.05 16 5 C 0.17 3.08 2.29 -68.11 -0.16 2.92 16 6 H 0.12 2.17 6.79 -51.93 -0.35 1.82 16 7 C -0.14 -2.30 5.89 -24.90 -0.15 -2.44 16 8 C 0.17 3.13 3.76 -65.78 -0.25 2.88 16 9 H 0.10 1.64 7.95 -51.93 -0.41 1.23 16 10 N -0.58 -13.25 2.96 -171.03 -0.51 -13.76 16 11 C 0.15 3.59 7.17 59.85 0.43 4.02 16 12 C -0.26 -6.72 9.58 -15.06 -0.14 -6.86 16 13 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 14 C 0.01 0.21 4.93 -17.43 -0.09 0.12 16 15 N -0.90 -25.00 11.01 55.49 0.61 -24.39 16 16 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.08 1.41 6.25 -2.53 -0.02 1.40 16 21 N -0.58 -10.54 1.32 -170.07 -0.22 -10.76 16 22 C 0.68 12.90 6.96 54.06 0.38 13.28 16 23 O -0.57 -11.60 11.69 -19.28 -0.23 -11.82 16 24 O -0.36 -6.14 9.42 -40.32 -0.38 -6.52 16 25 C 0.14 1.90 1.13 -90.62 -0.10 1.79 16 26 C -0.18 -2.51 8.37 37.16 0.31 -2.20 16 27 C -0.14 -1.49 8.85 37.16 0.33 -1.16 16 28 C -0.18 -2.43 8.37 37.16 0.31 -2.12 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 34 H 0.02 0.45 7.59 -51.93 -0.39 0.06 16 35 H 0.05 1.44 6.74 -51.93 -0.35 1.09 16 36 H 0.01 0.14 4.94 -51.93 -0.26 -0.11 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.59 8.04 -51.93 -0.42 1.18 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.44 5.87 -51.93 -0.30 1.14 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.43 5.89 -51.93 -0.31 1.12 16 47 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -31.26 379.81 -6.41 -37.66 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.82 Total: 2.62 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 2.16 Total: 21.43 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.12 Total: -48.91 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.32 Total: -34.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.26 -6.41 -37.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256274597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.178 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds