Wall clock time and date at job start Tue Mar 31 2020 15:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99846 * 2 1 4 4 N 1.46902 * 109.47113 * 125.00303 * 3 2 1 5 5 C 1.38577 * 110.99797 * 301.16685 * 4 3 2 6 6 N 1.31210 * 126.38207 * 105.71478 * 5 4 3 7 7 N 1.28511 * 110.09896 * 179.97438 * 6 5 4 8 8 C 1.31222 * 109.96634 * 359.97438 * 7 6 5 9 9 C 1.47984 * 126.47162 * 179.97438 * 8 7 6 10 10 C 1.41020 * 126.25322 * 165.05029 * 9 8 7 11 11 N 1.30630 * 108.08554 * 179.97438 * 10 9 8 12 12 N 1.40003 * 108.58628 * 0.02562 * 11 10 9 13 13 C 1.46496 * 125.87230 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47140 * 305.02914 * 13 12 11 15 15 H 1.08000 * 119.99751 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00149 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99589 * 0.26898 * 16 14 13 18 18 Si 1.86798 * 120.00013 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47260 * 89.99668 * 18 16 14 20 20 H 1.48498 * 109.46930 * 209.99750 * 18 16 14 21 21 H 1.48501 * 109.47008 * 329.99721 * 18 16 14 22 22 C 1.34825 * 108.25856 * 0.26467 * 12 11 10 23 23 N 1.36648 * 126.37703 * 286.01600 * 5 4 3 24 24 C 1.46497 * 127.18187 * 0.02762 * 23 5 4 25 25 C 1.46903 * 110.99948 * 65.11619 * 4 3 2 26 26 C 1.52997 * 117.50287 * 132.57474 * 25 4 3 27 27 C 1.52997 * 117.49831 * 63.95080 * 25 4 3 28 28 H 1.08004 * 120.00211 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00253 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00253 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47389 * 5.00715 * 3 2 1 32 32 H 1.08999 * 109.47355 * 244.99945 * 3 2 1 33 33 H 1.08003 * 125.95033 * 359.96056 * 10 9 8 34 34 H 1.08993 * 109.47480 * 185.02679 * 13 12 11 35 35 H 1.09006 * 109.46969 * 65.02164 * 13 12 11 36 36 H 0.97000 * 120.00223 * 359.72523 * 17 16 14 37 37 H 1.07997 * 126.20850 * 179.70483 * 22 12 11 38 38 H 1.09006 * 109.46650 * 266.93285 * 24 23 5 39 39 H 1.08997 * 109.47323 * 26.92935 * 24 23 5 40 40 H 1.08996 * 109.47259 * 146.93295 * 24 23 5 41 41 H 1.09004 * 115.55055 * 278.28209 * 25 4 3 42 42 H 1.08997 * 117.49504 * 0.02562 * 26 25 4 43 43 H 1.08999 * 117.50133 * 145.02042 * 26 25 4 44 44 H 1.09004 * 117.49770 * 214.97774 * 27 25 4 45 45 H 1.08995 * 117.50301 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.3216 1.1837 2.3358 6 7 2.2980 0.1087 3.0877 7 7 1.5766 0.3152 4.1310 8 6 1.0958 1.5359 4.1088 9 6 0.2208 2.1553 5.1289 10 6 -0.0562 3.5313 5.2656 11 7 -0.8680 3.6830 6.2778 12 7 -1.1399 2.4231 6.8243 13 6 -2.0070 2.1553 7.9744 14 6 -1.5461 2.9741 9.1526 15 1 -0.6923 3.6283 9.0546 16 6 -2.2136 2.8874 10.3559 17 7 -3.2493 2.0861 10.4769 18 14 -1.6417 3.9019 11.8164 19 1 -2.3359 5.2147 11.8095 20 1 -1.9596 3.1806 13.0749 21 1 -0.1752 4.1170 11.7259 22 6 -0.4616 1.4992 6.1143 23 7 1.5522 2.1281 2.9551 24 6 1.2751 3.4890 2.4891 25 6 4.0367 0.3057 0.9849 26 6 5.4875 0.7310 1.2197 27 6 4.9958 0.4395 -0.1995 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 0.3349 4.3218 4.6422 34 1 -1.9588 1.0961 8.2269 35 1 -3.0339 2.4231 7.7253 36 1 -3.5461 1.5591 9.7185 37 1 -0.4600 0.4338 6.2908 38 1 2.0009 4.1766 2.9235 39 1 1.3479 3.5228 1.4021 40 1 0.2703 3.7803 2.7952 41 1 3.7514 -0.7010 1.2903 42 1 5.6700 1.7722 1.4855 43 1 6.1570 0.0041 1.6797 44 1 5.3419 -0.4793 -0.6732 45 1 4.8552 1.2891 -0.8676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262839721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:59 Heat of formation + Delta-G solvation = 219.585631 kcal Electronic energy + Delta-G solvation = -27369.873513 eV Core-core repulsion = 23620.720670 eV Total energy + Delta-G solvation = -3749.152843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.74067 -40.60838 -39.06144 -35.67543 -34.85396 -34.13080 -33.03037 -31.72503 -30.81313 -28.48076 -27.65770 -26.85572 -25.68876 -23.62120 -22.94756 -22.54824 -21.98639 -21.04141 -20.28426 -19.91630 -19.40319 -17.69506 -17.22919 -16.79472 -16.29523 -15.99815 -15.84094 -15.13055 -14.77501 -14.54871 -14.34136 -14.02637 -13.89144 -13.55468 -13.47311 -13.34641 -12.90609 -12.57566 -12.38020 -12.16057 -11.95218 -11.84159 -11.67210 -11.40621 -11.24722 -10.97143 -10.81401 -10.67237 -10.47201 -10.21304 -10.17529 -10.05932 -9.92235 -9.77822 -9.41606 -8.87370 -8.69654 -8.55226 -7.55624 -6.65215 -4.40241 1.59771 1.88107 2.20867 2.48588 2.77929 3.19372 3.35151 3.37804 3.42653 3.47539 3.55006 3.57371 4.35597 4.43354 4.47213 4.52430 4.59910 4.67429 4.67931 4.90149 4.91816 4.96946 5.04871 5.11311 5.13694 5.21625 5.28736 5.31839 5.37015 5.50360 5.59870 5.63363 5.78958 5.82781 5.88942 5.91984 6.24342 6.27924 6.35805 6.43288 6.47464 6.58714 6.63532 6.93296 7.19487 7.49101 7.57833 8.21453 8.25048 8.52694 8.94384 9.27925 10.72909 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.002444 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.152604 B =11451.931758 C =11734.364994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.190 4.190 3 C 0.085 3.915 4 N -0.425 5.425 5 C 0.344 3.656 6 N -0.308 5.308 7 N -0.295 5.295 8 C 0.295 3.705 9 C -0.209 4.209 10 C 0.037 3.963 11 N -0.269 5.269 12 N -0.314 5.314 13 C 0.244 3.756 14 C -0.611 4.611 15 H 0.065 0.935 16 C 0.025 3.975 17 N -0.902 5.902 18 Si 1.080 2.920 19 H -0.284 1.284 20 H -0.281 1.281 21 H -0.286 1.286 22 C 0.110 3.890 23 N -0.477 5.477 24 C 0.076 3.924 25 C 0.020 3.980 26 C -0.159 4.159 27 C -0.168 4.168 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.175 0.825 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.179 0.821 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.842 -0.673 -24.243 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.209 4.209 3 C -0.041 4.041 4 N -0.148 5.148 5 C -0.012 4.012 6 N -0.152 5.152 7 N -0.135 5.135 8 C 0.030 3.970 9 C -0.224 4.224 10 C -0.151 4.151 11 N -0.090 5.090 12 N -0.092 5.092 13 C 0.126 3.874 14 C -0.649 4.649 15 H 0.083 0.917 16 C -0.180 4.180 17 N -0.537 5.537 18 Si 0.907 3.093 19 H -0.211 1.211 20 H -0.207 1.207 21 H -0.212 1.212 22 C -0.045 4.045 23 N -0.171 5.171 24 C -0.067 4.067 25 C -0.088 4.088 26 C -0.196 4.196 27 C -0.205 4.205 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.192 0.808 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.196 0.804 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.265 -0.440 -21.343 24.138 hybrid contribution 0.174 -0.245 -2.631 2.649 sum 11.440 -0.685 -23.974 26.573 Atomic orbital electron populations 1.23849 0.95871 1.01992 0.99036 1.23473 0.96665 0.99314 1.01448 1.21532 0.94043 0.95430 0.93079 1.58644 1.11170 1.47362 0.97588 1.21986 0.97292 0.86438 0.95449 1.74414 1.18456 1.19649 1.02663 1.74350 1.11337 1.12448 1.15372 1.21796 0.98400 0.90290 0.86526 1.17193 1.10413 0.92875 1.01953 1.23834 0.98929 0.94737 0.97587 1.77346 1.18095 1.03366 1.10177 1.49232 1.33616 1.02721 1.23595 1.19912 0.88645 0.98117 0.80720 1.22086 1.18392 1.28604 0.95839 0.91653 1.25939 0.93916 0.97458 1.00710 1.70827 1.24164 1.24311 1.34440 0.83372 0.75575 0.75556 0.74833 1.21056 1.20674 1.21235 1.22536 0.93450 0.96843 0.91668 1.45922 1.39763 1.13367 1.18097 1.22160 1.03418 0.79834 1.01292 1.22260 0.87473 0.94440 1.04656 1.23068 0.95320 1.03055 0.98198 1.23115 1.02281 1.03611 0.91512 0.88245 0.88786 0.86812 0.90143 0.88328 0.80832 0.93320 0.94251 0.92194 0.80397 0.90017 0.89485 0.88939 0.86920 0.88257 0.88274 0.88144 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 14.32 29.02 0.42 -1.19 16 2 C -0.19 -1.78 8.22 -36.03 -0.30 -2.07 16 3 C 0.09 0.70 5.60 -4.97 -0.03 0.67 16 4 N -0.43 -4.40 4.87 -168.25 -0.82 -5.22 16 5 C 0.34 4.74 6.00 -318.62 -1.91 2.83 16 6 N -0.31 -5.19 11.11 30.35 0.34 -4.86 16 7 N -0.29 -5.47 12.21 32.60 0.40 -5.07 16 8 C 0.30 4.95 7.91 -153.83 -1.22 3.73 16 9 C -0.21 -3.68 6.05 -105.42 -0.64 -4.31 16 10 C 0.04 0.63 10.77 -17.01 -0.18 0.44 16 11 N -0.27 -5.72 12.36 30.83 0.38 -5.34 16 12 N -0.31 -6.89 3.66 -62.23 -0.23 -7.12 16 13 C 0.24 5.92 5.57 -5.19 -0.03 5.89 16 14 C -0.61 -16.72 9.23 -34.44 -0.32 -17.03 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.02 0.68 5.46 -17.82 -0.10 0.58 16 17 N -0.90 -25.81 13.65 55.43 0.76 -25.06 16 18 Si 1.08 24.60 29.90 -169.99 -5.08 19.52 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.11 2.10 11.40 -16.81 -0.19 1.91 16 23 N -0.48 -6.43 3.23 -121.99 -0.39 -6.83 16 24 C 0.08 0.69 9.91 59.85 0.59 1.28 16 25 C 0.02 0.19 3.99 -67.71 -0.27 -0.08 16 26 C -0.16 -1.33 10.46 -26.73 -0.28 -1.61 16 27 C -0.17 -1.11 9.78 -26.73 -0.26 -1.37 16 28 H 0.10 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.09 0.83 7.84 -52.48 -0.41 0.42 16 30 H 0.11 1.10 7.58 -52.48 -0.40 0.71 16 31 H 0.08 0.61 6.01 -51.93 -0.31 0.30 16 32 H 0.10 0.61 7.22 -51.93 -0.38 0.23 16 33 H 0.17 2.22 6.23 -52.48 -0.33 1.90 16 34 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.04 0.99 8.01 -51.93 -0.42 0.57 16 36 H 0.27 7.46 7.22 -40.82 -0.29 7.17 16 37 H 0.18 3.04 8.06 -52.49 -0.42 2.62 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.60 6.24 -51.93 -0.32 0.27 16 40 H 0.09 0.78 6.36 -51.93 -0.33 0.45 16 41 H 0.11 1.27 7.36 -51.93 -0.38 0.88 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.57 7.75 -51.93 -0.40 0.17 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -33.00 379.24 -9.78 -42.78 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.13 Total: 1.80 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -4.71 Total: -10.33 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.43 Total: -59.49 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.00 -9.78 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262839721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.365 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 229.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 219.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds