Wall clock time and date at job start Tue Mar 31 2020 15:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99846 * 2 1 4 4 N 1.46902 * 109.47113 * 125.00303 * 3 2 1 5 5 C 1.38577 * 110.99797 * 301.16685 * 4 3 2 6 6 N 1.31210 * 126.38207 * 105.71478 * 5 4 3 7 7 N 1.28511 * 110.09896 * 179.97438 * 6 5 4 8 8 C 1.31222 * 109.96634 * 359.97438 * 7 6 5 9 9 C 1.47984 * 126.47162 * 179.97438 * 8 7 6 10 10 C 1.41020 * 126.25322 * 165.05029 * 9 8 7 11 11 N 1.30630 * 108.08554 * 179.97438 * 10 9 8 12 12 N 1.40003 * 108.58628 * 0.02562 * 11 10 9 13 13 C 1.46496 * 125.87230 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47140 * 305.02914 * 13 12 11 15 15 H 1.08000 * 119.99751 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00149 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99589 * 0.26898 * 16 14 13 18 18 Si 1.86798 * 120.00013 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47260 * 89.99668 * 18 16 14 20 20 H 1.48498 * 109.46930 * 209.99750 * 18 16 14 21 21 H 1.48501 * 109.47008 * 329.99721 * 18 16 14 22 22 C 1.34825 * 108.25856 * 0.26467 * 12 11 10 23 23 N 1.36648 * 126.37703 * 286.01600 * 5 4 3 24 24 C 1.46497 * 127.18187 * 0.02762 * 23 5 4 25 25 C 1.46903 * 110.99948 * 65.11619 * 4 3 2 26 26 C 1.52997 * 117.50287 * 132.57474 * 25 4 3 27 27 C 1.52997 * 117.49831 * 63.95080 * 25 4 3 28 28 H 1.08004 * 120.00211 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00253 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00253 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47389 * 5.00715 * 3 2 1 32 32 H 1.08999 * 109.47355 * 244.99945 * 3 2 1 33 33 H 1.08003 * 125.95033 * 359.96056 * 10 9 8 34 34 H 1.08993 * 109.47480 * 185.02679 * 13 12 11 35 35 H 1.09006 * 109.46969 * 65.02164 * 13 12 11 36 36 H 0.97000 * 120.00223 * 359.72523 * 17 16 14 37 37 H 1.07997 * 126.20850 * 179.70483 * 22 12 11 38 38 H 1.09006 * 109.46650 * 266.93285 * 24 23 5 39 39 H 1.08997 * 109.47323 * 26.92935 * 24 23 5 40 40 H 1.08996 * 109.47259 * 146.93295 * 24 23 5 41 41 H 1.09004 * 115.55055 * 278.28209 * 25 4 3 42 42 H 1.08997 * 117.49504 * 0.02562 * 26 25 4 43 43 H 1.08999 * 117.50133 * 145.02042 * 26 25 4 44 44 H 1.09004 * 117.49770 * 214.97774 * 27 25 4 45 45 H 1.08995 * 117.50301 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.3216 1.1837 2.3358 6 7 2.2980 0.1087 3.0877 7 7 1.5766 0.3152 4.1310 8 6 1.0958 1.5359 4.1088 9 6 0.2208 2.1553 5.1289 10 6 -0.0562 3.5313 5.2656 11 7 -0.8680 3.6830 6.2778 12 7 -1.1399 2.4231 6.8243 13 6 -2.0070 2.1553 7.9744 14 6 -1.5461 2.9741 9.1526 15 1 -0.6923 3.6283 9.0546 16 6 -2.2136 2.8874 10.3559 17 7 -3.2493 2.0861 10.4769 18 14 -1.6417 3.9019 11.8164 19 1 -2.3359 5.2147 11.8095 20 1 -1.9596 3.1806 13.0749 21 1 -0.1752 4.1170 11.7259 22 6 -0.4616 1.4992 6.1143 23 7 1.5522 2.1281 2.9551 24 6 1.2751 3.4890 2.4891 25 6 4.0367 0.3057 0.9849 26 6 5.4875 0.7310 1.2197 27 6 4.9958 0.4395 -0.1995 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 0.3349 4.3218 4.6422 34 1 -1.9588 1.0961 8.2269 35 1 -3.0339 2.4231 7.7253 36 1 -3.5461 1.5591 9.7185 37 1 -0.4600 0.4338 6.2908 38 1 2.0009 4.1766 2.9235 39 1 1.3479 3.5228 1.4021 40 1 0.2703 3.7803 2.7952 41 1 3.7514 -0.7010 1.2903 42 1 5.6700 1.7722 1.4855 43 1 6.1570 0.0041 1.6797 44 1 5.3419 -0.4793 -0.6732 45 1 4.8552 1.2891 -0.8676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262839721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:58 Heat of formation + Delta-G solvation = 201.225179 kcal Electronic energy + Delta-G solvation = -27370.669682 eV Core-core repulsion = 23620.720670 eV Total energy + Delta-G solvation = -3749.949012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.89353 -42.11492 -39.83441 -36.45152 -36.22526 -35.67167 -34.02212 -33.35315 -32.12205 -29.82855 -28.63939 -28.41828 -26.54061 -25.47915 -24.06717 -23.32909 -22.98556 -22.19406 -21.62668 -21.07636 -20.29380 -19.29754 -18.47296 -17.90491 -17.64897 -17.02686 -16.72915 -16.25626 -16.15966 -15.74808 -15.44859 -15.41001 -15.17473 -14.71130 -14.33224 -14.20931 -14.16439 -14.06297 -13.85256 -13.43467 -13.26186 -12.84690 -12.63019 -12.57372 -12.55023 -12.28203 -11.98044 -11.95193 -11.61808 -11.41081 -11.34709 -11.19258 -11.10250 -11.01868 -10.72293 -10.55706 -10.41495 -9.84319 -8.96606 -8.77576 -6.58703 0.36249 1.01209 1.08038 1.27064 1.51037 1.53316 1.58006 1.61815 1.78565 2.22944 2.47161 2.61706 2.83439 2.99119 3.35205 3.55864 3.75838 3.76798 3.83036 3.87780 3.98401 4.04315 4.13093 4.20884 4.26137 4.30428 4.34484 4.52855 4.55798 4.56559 4.71561 4.77910 4.80857 4.81941 4.90797 4.94726 5.01563 5.11687 5.29101 5.36011 5.42952 5.55041 5.58764 5.69345 5.72676 5.77700 6.14101 6.20128 6.35383 6.71293 7.16731 7.74919 8.56560 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.002444 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.152604 B =11451.931758 C =11734.364994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.193 4.193 3 C 0.085 3.915 4 N -0.415 5.415 5 C 0.363 3.637 6 N -0.344 5.344 7 N -0.328 5.328 8 C 0.279 3.721 9 C -0.197 4.197 10 C 0.060 3.940 11 N -0.312 5.312 12 N -0.339 5.339 13 C 0.254 3.746 14 C -0.622 4.622 15 H 0.049 0.951 16 C -0.018 4.018 17 N -0.923 5.923 18 Si 1.122 2.878 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.099 3.901 23 N -0.471 5.471 24 C 0.063 3.937 25 C -0.006 4.006 26 C -0.167 4.167 27 C -0.134 4.134 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.219 0.781 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.188 0.812 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 0.989 -26.664 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.213 4.213 3 C -0.040 4.040 4 N -0.138 5.138 5 C 0.006 3.994 6 N -0.187 5.187 7 N -0.168 5.168 8 C 0.012 3.988 9 C -0.212 4.212 10 C -0.127 4.127 11 N -0.133 5.133 12 N -0.117 5.117 13 C 0.135 3.865 14 C -0.660 4.660 15 H 0.067 0.933 16 C -0.218 4.218 17 N -0.559 5.559 18 Si 0.943 3.057 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.203 1.203 22 C -0.054 4.054 23 N -0.164 5.164 24 C -0.078 4.078 25 C -0.114 4.114 26 C -0.205 4.205 27 C -0.171 4.171 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.235 0.765 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.205 0.795 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.953 1.225 -23.814 27.137 hybrid contribution -0.217 -0.800 -2.120 2.277 sum 12.736 0.424 -25.935 28.896 Atomic orbital electron populations 1.23956 0.96124 1.02312 0.99317 1.23553 0.96702 0.99789 1.01209 1.21708 0.94179 0.94967 0.93180 1.58850 1.11139 1.47119 0.96721 1.22385 0.95592 0.85609 0.95820 1.74353 1.19724 1.21471 1.03180 1.74249 1.12195 1.13744 1.16619 1.21536 0.99146 0.90437 0.87644 1.17251 1.09515 0.93070 1.01406 1.24489 0.96601 0.95523 0.96122 1.77285 1.20326 1.03568 1.12110 1.48913 1.35020 1.03655 1.24083 1.19510 0.88404 0.97537 0.81022 1.22278 1.17847 1.28640 0.97211 0.93313 1.27272 0.93445 0.97747 1.03354 1.70917 1.25218 1.25388 1.34362 0.82844 0.75791 0.74872 0.72206 1.19584 1.20061 1.20269 1.22840 0.93425 0.97219 0.91945 1.46082 1.38866 1.14656 1.16832 1.22582 1.04373 0.77668 1.03201 1.22274 0.87809 0.93411 1.07881 1.23121 0.94405 1.02851 1.00118 1.23225 0.98616 1.04804 0.90478 0.88654 0.87936 0.87634 0.88972 0.85461 0.76462 0.93234 0.95730 0.92905 0.79473 0.88303 0.86807 0.88186 0.89089 0.88577 0.88252 0.86558 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 67.78 0.97 -2.20 16 2 C -0.19 -3.31 8.22 25.65 0.21 -3.10 16 3 C 0.09 1.12 5.60 85.56 0.48 1.60 16 4 N -0.42 -7.55 4.87 -686.21 -3.34 -10.90 16 5 C 0.36 9.43 6.00 260.02 1.56 10.99 16 6 N -0.34 -11.55 11.11 -57.89 -0.64 -12.19 16 7 N -0.33 -12.23 12.21 -50.77 -0.62 -12.85 16 8 C 0.28 9.14 7.91 136.30 1.08 10.22 16 9 C -0.20 -6.82 6.05 -20.38 -0.12 -6.94 16 10 C 0.06 1.97 10.77 85.55 0.92 2.89 16 11 N -0.31 -13.26 12.36 -56.36 -0.70 -13.96 16 12 N -0.34 -15.20 3.66 -350.78 -1.28 -16.48 16 13 C 0.25 12.81 5.57 85.64 0.48 13.29 16 14 C -0.62 -34.80 9.23 25.60 0.24 -34.57 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 16 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 17 N -0.92 -53.67 13.65 21.45 0.29 -53.38 16 18 Si 1.12 49.45 29.90 68.60 2.05 51.50 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.10 3.85 11.40 83.86 0.96 4.80 16 23 N -0.47 -11.67 3.23 -539.86 -1.75 -13.42 16 24 C 0.06 0.90 9.91 127.77 1.27 2.16 16 25 C -0.01 -0.10 3.99 44.91 0.18 0.08 16 26 C -0.17 -2.49 10.46 30.59 0.32 -2.17 16 27 C -0.13 -1.32 9.78 30.59 0.30 -1.02 16 28 H 0.10 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.10 1.61 7.84 -2.91 -0.02 1.59 16 30 H 0.11 1.98 7.58 -2.91 -0.02 1.95 16 31 H 0.09 1.02 6.01 -2.39 -0.01 1.00 16 32 H 0.13 0.99 7.22 -2.39 -0.02 0.98 16 33 H 0.22 4.81 6.23 -2.91 -0.02 4.79 16 34 H 0.05 2.45 7.93 -2.39 -0.02 2.43 16 35 H 0.02 1.30 8.01 -2.38 -0.02 1.28 16 36 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 37 H 0.19 6.66 8.06 -2.91 -0.02 6.63 16 38 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.11 1.03 6.24 -2.39 -0.01 1.02 16 40 H 0.10 1.31 6.36 -2.39 -0.02 1.30 16 41 H 0.09 2.02 7.36 -2.38 -0.02 2.00 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.12 0.82 8.14 -2.38 -0.02 0.81 16 45 H 0.12 0.80 7.75 -2.39 -0.02 0.78 16 Total: -1.00 -73.82 379.24 4.41 -69.41 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.10 Total: 16.78 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 9.29 Total: -4.52 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -8.04 Total: -133.18 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.50 kcal Total: -73.82 4.41 -69.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262839721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.634 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds