Wall clock time and date at job start Tue Mar 31 2020 14:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00126 * 2 1 4 4 C 1.53002 * 109.46992 * 125.00104 * 3 2 1 5 5 C 1.52995 * 109.46978 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47245 * 174.71327 * 5 4 3 7 7 C 1.47289 * 111.00240 * 174.84619 * 6 5 4 8 8 C 1.53237 * 107.79142 * 218.24245 * 7 6 5 9 9 F 1.39902 * 111.47014 * 123.26044 * 8 7 6 10 10 C 1.50733 * 110.75056 * 247.99985 * 8 7 6 11 11 O 1.21284 * 124.76344 * 281.17371 * 10 8 7 12 12 N 1.34280 * 110.48231 * 101.14061 * 10 8 7 13 13 C 1.46502 * 124.29394 * 177.83162 * 12 10 8 14 14 C 1.52999 * 109.46960 * 89.97321 * 13 12 10 15 15 C 1.50710 * 109.47009 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99621 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00292 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00442 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46946 * 59.99557 * 19 17 15 21 21 H 1.48494 * 109.47156 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46890 * 300.00176 * 19 17 15 23 23 C 1.46564 * 111.40924 * 357.80332 * 12 10 8 24 24 C 1.55169 * 105.76688 * 1.80311 * 8 7 6 25 25 F 1.39898 * 113.77717 * 140.92080 * 24 8 7 26 26 C 1.47636 * 111.05885 * 55.20008 * 6 5 4 27 27 H 1.08001 * 120.00180 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99991 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00180 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47020 * 5.00418 * 3 2 1 31 31 H 1.08992 * 109.47029 * 245.00177 * 3 2 1 32 32 H 1.08998 * 109.46982 * 60.00290 * 4 3 2 33 33 H 1.09004 * 109.47075 * 300.00313 * 4 3 2 34 34 H 1.09000 * 109.47604 * 54.71390 * 5 4 3 35 35 H 1.09000 * 109.47335 * 294.71412 * 5 4 3 36 36 H 1.09005 * 109.80185 * 98.65314 * 7 6 5 37 37 H 1.09001 * 109.80237 * 337.83207 * 7 6 5 38 38 H 1.08998 * 109.46778 * 209.96882 * 13 12 10 39 39 H 1.08997 * 109.47209 * 329.96792 * 13 12 10 40 40 H 1.08999 * 109.47400 * 299.99793 * 14 13 12 41 41 H 1.09000 * 109.47538 * 60.00239 * 14 13 12 42 42 H 0.97000 * 120.00038 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.14275 * 135.25791 * 23 12 10 44 44 H 1.09001 * 110.14503 * 256.98166 * 23 12 10 45 45 H 1.09003 * 110.16518 * 32.98337 * 26 6 5 46 46 H 1.09003 * 110.28653 * 271.14260 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7996 2.6582 1.1820 6 7 4.6389 2.7390 2.3849 7 6 5.4827 3.9460 2.3598 8 6 6.8503 3.5735 2.9419 9 9 7.8836 3.8530 2.0411 10 6 7.0718 4.2589 4.2660 11 8 7.4037 5.4179 4.3978 12 7 6.8494 3.4064 5.2794 13 6 7.0213 3.7437 6.6946 14 6 5.7071 4.2957 7.2505 15 6 5.8837 4.6421 8.7066 16 1 6.8377 4.4839 9.1874 17 6 4.8271 5.1599 9.4251 18 7 3.6648 5.3511 8.8400 19 14 5.0461 5.5900 11.2297 20 1 6.1112 6.6155 11.3684 21 1 3.7706 6.1256 11.7693 22 1 5.4311 4.3712 11.9858 23 6 6.4123 2.0959 4.7899 24 6 6.7713 2.0584 3.2678 25 9 7.9468 1.3572 2.9785 26 6 5.5352 1.5702 2.4858 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 3.7399 0.5065 1.0920 33 1 2.4772 1.2355 2.1130 34 1 3.0911 3.4866 1.1771 35 1 4.4300 2.7143 0.2946 36 1 5.0249 4.7292 2.9641 37 1 5.6003 4.2930 1.3332 38 1 7.3033 2.8490 7.2497 39 1 7.8034 4.4960 6.7965 40 1 5.4250 5.1903 6.6955 41 1 4.9250 3.5433 7.1488 42 1 2.9215 5.7157 9.3454 43 1 6.9422 1.3025 5.3170 44 1 5.3366 1.9841 4.9258 45 1 5.8277 1.2339 1.4910 46 1 5.0428 0.7619 3.0264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273487730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:05 Heat of formation + Delta-G solvation = -100.875107 kcal Electronic energy + Delta-G solvation = -28960.331875 eV Core-core repulsion = 24714.300874 eV Total energy + Delta-G solvation = -4246.031001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.51776 -47.47476 -40.56220 -38.52034 -36.38167 -35.70726 -33.71298 -32.55319 -30.94727 -29.91567 -29.00878 -26.32719 -25.88842 -24.71005 -22.74331 -21.98106 -21.13390 -20.76624 -20.09091 -19.62171 -17.55921 -16.85473 -16.68019 -16.27105 -16.02678 -15.75507 -15.62491 -15.11149 -15.08619 -14.63199 -14.53303 -14.34036 -14.08150 -13.93783 -13.82219 -13.79904 -13.36076 -12.97907 -12.82193 -12.64977 -12.43484 -12.32585 -12.17742 -11.99196 -11.75934 -11.45734 -11.28232 -11.09059 -10.98469 -10.96223 -10.83052 -10.74208 -10.06687 -9.94539 -9.65361 -9.52324 -9.21970 -8.84205 -8.40111 -8.28971 -6.05160 -4.09253 1.97079 2.54425 2.98819 3.26399 3.31570 3.36182 3.38839 3.42022 3.62824 3.66541 4.10235 4.30465 4.39572 4.43462 4.50031 4.62793 4.82253 4.87232 4.97266 4.98832 5.11690 5.22827 5.28166 5.31032 5.32875 5.36200 5.46724 5.48831 5.56440 5.60289 5.71432 5.83119 5.86455 5.94543 6.30717 6.33321 6.37587 6.45173 6.53914 6.64856 6.72018 7.21188 7.59015 7.72555 7.92153 8.20732 8.33759 8.96456 9.55058 11.05980 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003304 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.710181 B = 8473.047832 C =10210.764048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.093 4.093 4 C -0.117 4.117 5 C 0.049 3.951 6 N -0.508 5.508 7 C 0.037 3.963 8 C 0.060 3.940 9 F -0.170 7.170 10 C 0.510 3.490 11 O -0.502 6.502 12 N -0.595 5.595 13 C 0.128 3.872 14 C 0.012 3.988 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.095 3.905 24 C 0.078 3.922 25 F -0.166 7.166 26 C 0.034 3.966 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -12.374 -18.910 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.154 4.154 5 C -0.078 4.078 6 N -0.232 5.232 7 C -0.092 4.092 8 C 0.037 3.963 9 F -0.150 7.150 10 C 0.293 3.707 11 O -0.376 6.376 12 N -0.328 5.328 13 C 0.009 3.991 14 C -0.026 4.026 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.029 4.029 24 C 0.058 3.942 25 F -0.146 7.146 26 C -0.095 4.095 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.251 -11.647 -18.294 21.803 hybrid contribution 0.771 0.123 0.153 0.796 sum -1.481 -11.523 -18.141 21.542 Atomic orbital electron populations 1.23878 0.96024 1.01896 1.01326 1.22928 0.96033 0.98425 0.99750 1.20725 0.98216 0.95689 0.98494 1.21608 0.98076 0.96366 0.99395 1.22432 0.96328 0.99532 0.89530 1.63954 1.19659 1.00478 1.39154 1.23023 0.88748 0.95079 1.02316 1.22575 0.88201 0.95758 0.89762 1.92930 1.59647 1.94620 1.67807 1.20004 0.78661 0.86561 0.85491 1.90769 1.46609 1.15133 1.85063 1.48309 1.65050 1.11461 1.07961 1.22004 1.02111 1.00388 0.74571 1.19417 0.90670 0.96734 0.95735 1.21011 0.97395 1.43214 0.94779 0.92479 1.24987 0.95189 0.95432 0.98532 1.69962 1.01790 1.44588 1.36564 0.86606 0.77410 0.78833 0.84859 1.20143 1.21234 1.20172 1.22993 1.02965 0.87321 0.89618 1.22973 0.83592 0.89598 0.98069 1.92914 1.48049 1.79313 1.94335 1.23272 0.90562 0.95465 1.00173 0.88538 0.88600 0.87467 0.91178 0.91106 0.91662 0.90203 0.89519 0.94077 0.87033 0.90362 0.90897 0.90591 0.95882 0.96108 0.92819 0.88711 0.87265 0.91467 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 14.32 29.02 0.42 -0.89 16 2 C -0.15 -1.03 9.52 -36.02 -0.34 -1.37 16 3 C -0.09 -0.60 5.66 -27.88 -0.16 -0.76 16 4 C -0.12 -0.82 4.86 -26.73 -0.13 -0.95 16 5 C 0.05 0.40 4.77 -3.83 -0.02 0.38 16 6 N -0.51 -5.40 5.24 -232.73 -1.22 -6.62 16 7 C 0.04 0.47 6.26 -3.49 -0.02 0.45 16 8 C 0.06 0.92 1.68 -90.49 -0.15 0.77 16 9 F -0.17 -2.79 16.69 2.25 0.04 -2.75 16 10 C 0.51 9.81 6.88 -11.19 -0.08 9.73 16 11 O -0.50 -11.58 17.59 5.55 0.10 -11.48 16 12 N -0.60 -10.74 2.92 -171.59 -0.50 -11.25 16 13 C 0.13 2.63 5.85 -4.04 -0.02 2.61 16 14 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 15 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.10 1.29 6.76 -2.16 -0.01 1.28 16 24 C 0.08 0.99 2.08 -87.00 -0.18 0.81 16 25 F -0.17 -2.25 17.02 2.25 0.04 -2.22 16 26 C 0.03 0.32 4.30 -2.79 -0.01 0.31 16 27 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 28 H 0.10 0.56 8.06 -52.48 -0.42 0.14 16 29 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 7.14 -51.93 -0.37 0.05 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.31 7.96 -51.93 -0.41 -0.10 16 36 H 0.11 1.60 7.69 -51.93 -0.40 1.20 16 37 H 0.08 0.86 7.49 -51.93 -0.39 0.47 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.65 7.94 -51.93 -0.41 1.23 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.11 1.41 7.64 -51.93 -0.40 1.02 16 45 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 46 H 0.11 0.87 7.90 -51.93 -0.41 0.46 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -32.76 382.63 -8.69 -41.45 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.35 Total: -2.87 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.27 Total: -0.73 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.99 Total: -43.56 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.10 Total: -11.48 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.08 Total: -4.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.76 -8.69 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273487730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.426 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds